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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 360, 366 |
| AccIII | TCCGGA | 2 cut(s) | 122, 219 |
| AciI | CCGC | 5 cut(s) | 31, 92, 107, 301, 358 |
| AclWI | GGATC | 2 cut(s) | 89, 102 |
| AcoI | YGGCCR | 1 cut(s) | 355 |
| AdeI | CACNNNGTG | 1 cut(s) | 64 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 48, 165, 166, 205, 219 |
| AgsI | TTSAA | 1 cut(s) | 152 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| Alw21I | GWGCWC | 1 cut(s) | 267 |
| Alw26I | GTCTC | 2 cut(s) | 120, 206 |
| AlwI | GGATC | 2 cut(s) | 89, 102 |
| Ama87I | CYCGRG | 2 cut(s) | 74, 205 |
| Aor13HI | TCCGGA | 2 cut(s) | 122, 219 |
| AoxI | GGCC | 3 cut(s) | 134, 190, 355 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 192 |
| AspA2I | CCTAGG | 1 cut(s) | 164 |
| AspLEI | GCGC | 3 cut(s) | 233, 366, 368 |
| AspS9I | GGNCC | 2 cut(s) | 125, 209 |
| AsuC2I | CCSGG | 2 cut(s) | 206, 207 |
| AsuHPI | GGTGA | 1 cut(s) | 277 |
| AsuII | TTCGAA | 1 cut(s) | 26 |
| AvaI | CYCGRG | 2 cut(s) | 74, 205 |
| AvaII | GGWCC | 2 cut(s) | 125, 209 |
| AvrII | CCTAGG | 1 cut(s) | 164 |
| BamHI | GGATCC | 1 cut(s) | 94 |
| BauI | CACGAG | 1 cut(s) | 141 |
| Bbv12I | GWGCWC | 1 cut(s) | 267 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BccI | CCATC | 1 cut(s) | 276 |
| BceAI | ACGGC | 2 cut(s) | 183, 244 |
| BciVI | GTATCC | 1 cut(s) | 264 |
| BcnI | CCSGG | 2 cut(s) | 206, 207 |
| BcoDI | GTCTC | 2 cut(s) | 120, 206 |
| BfaI | CTAG | 3 cut(s) | 165, 183, 373 |
| BfoI | RGCGCY | 1 cut(s) | 234 |
| BfuI | GTATCC | 1 cut(s) | 264 |
| BisI | GCNGC | 2 cut(s) | 90, 358 |
| BlnI | CCTAGG | 1 cut(s) | 164 |
| BlsI | GCNGC | 2 cut(s) | 91, 359 |
| Bme1390I | CCNGG | 2 cut(s) | 206, 207 |
| Bme18I | GGWCC | 2 cut(s) | 125, 209 |
| BmeT110I | CYCGRG | 2 cut(s) | 74, 205 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 2 cut(s) | 125, 209 |
| BmiI | GGNNCC | 6 cut(s) | 40, 69, 81, 96, 210, 211 |
| BmrFI | CCNGG | 2 cut(s) | 206, 207 |
| BmsI | GCATC | 1 cut(s) | 169 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 124, 156 |
| Bpu14I | TTCGAA | 1 cut(s) | 26 |
| BpuMI | CCSGG | 2 cut(s) | 206, 207 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 4 cut(s) | 46, 164, 205, 257 |
| BsaWI | WCCGGW | 2 cut(s) | 122, 219 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 48, 165, 166, 205, 219 |
| Bse118I | RCCGGY | 1 cut(s) | 136 |
| BseAI | TCCGGA | 2 cut(s) | 122, 219 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 4 cut(s) | 46, 164, 205, 257 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 48, 165, 166, 205, 219 |
| BsePI | GCGCGC | 1 cut(s) | 364 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| Bsh1236I | CGCG | 2 cut(s) | 360, 366 |
| BshFI | GGCC | 3 cut(s) | 136, 192, 357 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 267 |
| BsiHKCI | CYCGRG | 2 cut(s) | 74, 205 |
| BsiSI | CCGG | 4 cut(s) | 123, 137, 206, 220 |
| BslFI | GGGAC | 1 cut(s) | 222 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 48, 165, 166, 205, 219 |
| BsmAI | GTCTC | 2 cut(s) | 120, 206 |
| BsmBI | CGTCTC | 1 cut(s) | 206 |
| BsmFI | GGGAC | 1 cut(s) | 222 |
| BsnI | GGCC | 3 cut(s) | 136, 192, 357 |
| BsoBI | CYCGRG | 2 cut(s) | 74, 205 |
| Bsp119I | TTCGAA | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 1 cut(s) | 267 |
| Bsp13I | TCCGGA | 2 cut(s) | 122, 219 |
| Bsp143I | GATC | 2 cut(s) | 94, 325 |
| BspACI | CCGC | 5 cut(s) | 31, 92, 107, 301, 358 |
| BspANI | GGCC | 3 cut(s) | 136, 192, 357 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspEI | TCCGGA | 2 cut(s) | 122, 219 |
| BspFNI | CGCG | 2 cut(s) | 360, 366 |
| BspLI | GGNNCC | 6 cut(s) | 40, 69, 81, 96, 210, 211 |
| BspPI | GGATC | 2 cut(s) | 89, 102 |
| BspQI | GCTCTTC | 1 cut(s) | 285 |
| BspT104I | TTCGAA | 1 cut(s) | 26 |
| BsrFI | RCCGGY | 1 cut(s) | 136 |
| BssAI | RCCGGY | 1 cut(s) | 136 |
| BssECI | CCNNGG | 4 cut(s) | 46, 164, 205, 257 |
| BssHII | GCGCGC | 1 cut(s) | 364 |
| BssMI | GATC | 2 cut(s) | 94, 325 |
| BssSI | CACGAG | 1 cut(s) | 141 |
| BssT1I | CCWWGG | 1 cut(s) | 164 |
| Bst2BI | CACGAG | 1 cut(s) | 141 |
| Bst6I | CTCTTC | 1 cut(s) | 285 |
| BstBI | TTCGAA | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 5 cut(s) | 138, 279, 362, 366, 370 |
| BstFNI | CGCG | 2 cut(s) | 360, 366 |
| BstH2I | RGCGCY | 1 cut(s) | 234 |
| BstHHI | GCGC | 3 cut(s) | 233, 366, 368 |
| BstKTI | GATC | 2 cut(s) | 97, 328 |
| BstMAI | GTCTC | 2 cut(s) | 120, 206 |
| BstMBI | GATC | 2 cut(s) | 94, 325 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 86, 363 |
| BstSCI | CCNGG | 2 cut(s) | 204, 205 |
| BstUI | CGCG | 2 cut(s) | 360, 366 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| BstX2I | RGATCY | 1 cut(s) | 94 |
| BstYI | RGATCY | 1 cut(s) | 94 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 264 |
| BsuRI | GGCC | 3 cut(s) | 136, 192, 357 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| Cac8I | GCNNGC | 5 cut(s) | 138, 279, 362, 366, 370 |
| CfoI | GCGC | 3 cut(s) | 233, 366, 368 |
| Cfr10I | RCCGGY | 1 cut(s) | 136 |
| Cfr13I | GGNCC | 2 cut(s) | 125, 209 |
| Cfr9I | CCCGGG | 1 cut(s) | 205 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CviAII | CATG | 1 cut(s) | 10 |
| CviJI | RGCY | 9 cut(s) | 70, 80, 136, 140, 192, 245, 340, 357, 372 |
| CviKI_1 | RGCY | 9 cut(s) | 70, 80, 136, 140, 192, 245, 340, 357, 372 |
| DpnI | GATC | 2 cut(s) | 96, 327 |
| DpnII | GATC | 2 cut(s) | 94, 325 |
| DraIII | CACNNNGTG | 1 cut(s) | 64 |
| EaeI | YGGCCR | 1 cut(s) | 355 |
| Eam1104I | CTCTTC | 1 cut(s) | 285 |
| EarI | CTCTTC | 1 cut(s) | 285 |
| Eco130I | CCWWGG | 1 cut(s) | 164 |
| Eco147I | AGGCCT | 1 cut(s) | 192 |
| Eco32I | GATATC | 1 cut(s) | 217 |
| Eco47I | GGWCC | 2 cut(s) | 125, 209 |
| Eco88I | CYCGRG | 2 cut(s) | 74, 205 |
| EcoO109I | RGGNCCY | 1 cut(s) | 209 |
| EcoRV | GATATC | 1 cut(s) | 217 |
| EcoT14I | CCWWGG | 1 cut(s) | 164 |
| ErhI | CCWWGG | 1 cut(s) | 164 |
| Esp3I | CGTCTC | 1 cut(s) | 206 |
| FaeI | CATG | 1 cut(s) | 13 |
| FaiI | YATR | 1 cut(s) | 11 |
| FaqI | GGGAC | 1 cut(s) | 222 |
| FatI | CATG | 1 cut(s) | 9 |
| FauI | CCCGC | 1 cut(s) | 24 |
| Fnu4HI | GCNGC | 2 cut(s) | 90, 358 |
| Fsp4HI | GCNGC | 2 cut(s) | 90, 358 |
| FspBI | CTAG | 3 cut(s) | 165, 183, 373 |
| GlaI | GCGC | 3 cut(s) | 232, 365, 367 |
| GluI | GCNGC | 2 cut(s) | 90, 358 |
| HaeII | RGCGCY | 1 cut(s) | 234 |
| HaeIII | GGCC | 3 cut(s) | 136, 192, 357 |
| HapII | CCGG | 4 cut(s) | 123, 137, 206, 220 |
| HhaI | GCGC | 3 cut(s) | 233, 366, 368 |
| Hin1II | CATG | 1 cut(s) | 13 |
| Hin6I | GCGC | 3 cut(s) | 231, 364, 366 |
| HinP1I | GCGC | 3 cut(s) | 231, 364, 366 |
| HpaII | CCGG | 4 cut(s) | 123, 137, 206, 220 |
| HphI | GGTGA | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 1 cut(s) | 258 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 123, 220 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyAV | CCTTC | 3 cut(s) | 129, 182, 203 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 86, 363 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| Hsp92II | CATG | 1 cut(s) | 13 |
| HspAI | GCGC | 3 cut(s) | 231, 364, 366 |
| KflI | GGGWCCC | 1 cut(s) | 209 |
| Kpn2I | TCCGGA | 2 cut(s) | 122, 219 |
| KroI | GCCGGC | 1 cut(s) | 136 |
| KroNI | GCCGGC | 1 cut(s) | 138 |
| Kzo9I | GATC | 2 cut(s) | 94, 325 |
| LguI | GCTCTTC | 1 cut(s) | 285 |
| LmnI | GCTCC | 4 cut(s) | 67, 85, 238, 270 |
| LpnPI | CCDG | 6 cut(s) | 136, 141, 150, 219, 233, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| LweI | GCATC | 1 cut(s) | 169 |
| MaeI | CTAG | 3 cut(s) | 165, 183, 373 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MalI | GATC | 2 cut(s) | 96, 327 |
| MboI | GATC | 2 cut(s) | 94, 325 |
| MboII | GAAGA | 1 cut(s) | 302 |
| MflI | RGATCY | 1 cut(s) | 94 |
| MhlI | GDGCHC | 1 cut(s) | 267 |
| MluCI | AATT | 2 cut(s) | 152, 296 |
| MnlI | CCTC | 7 cut(s) | 26, 29, 41, 70, 81, 126, 252 |
| MroI | TCCGGA | 2 cut(s) | 122, 219 |
| MroNI | GCCGGC | 1 cut(s) | 136 |
| MroXI | GAANNNNTTC | 1 cut(s) | 192 |
| MspI | CCGG | 4 cut(s) | 123, 137, 206, 220 |
| MspR9I | CCNGG | 2 cut(s) | 206, 207 |
| MvnI | CGCG | 2 cut(s) | 360, 366 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 86, 363 |
| NaeI | GCCGGC | 1 cut(s) | 138 |
| NciI | CCSGG | 2 cut(s) | 206, 207 |
| NdeII | GATC | 2 cut(s) | 94, 325 |
| NgoMIV | GCCGGC | 1 cut(s) | 136 |
| NlaIII | CATG | 1 cut(s) | 13 |
| NlaIV | GGNNCC | 6 cut(s) | 40, 69, 81, 96, 210, 211 |
| NspV | TTCGAA | 1 cut(s) | 26 |
| PaeR7I | CTCGAG | 1 cut(s) | 74 |
| PauI | GCGCGC | 1 cut(s) | 364 |
| PceI | AGGCCT | 1 cut(s) | 192 |
| PciSI | GCTCTTC | 1 cut(s) | 285 |
| PdiI | GCCGGC | 1 cut(s) | 138 |
| PdmI | GAANNNNTTC | 1 cut(s) | 192 |
| PkrI | GCNGC | 2 cut(s) | 91, 359 |
| PpuMI | RGGWCCY | 1 cut(s) | 209 |
| Psp5II | RGGWCCY | 1 cut(s) | 209 |
| PspN4I | GGNNCC | 6 cut(s) | 40, 69, 81, 96, 210, 211 |
| PspPI | GGNCC | 2 cut(s) | 125, 209 |
| PspPPI | RGGWCCY | 1 cut(s) | 209 |
| PsuI | RGATCY | 1 cut(s) | 94 |
| PteI | GCGCGC | 1 cut(s) | 364 |
| SapI | GCTCTTC | 1 cut(s) | 285 |
| SatI | GCNGC | 2 cut(s) | 90, 358 |
| Sau3AI | GATC | 2 cut(s) | 94, 325 |
| Sau96I | GGNCC | 2 cut(s) | 125, 209 |
| ScrFI | CCNGG | 2 cut(s) | 206, 207 |
| SduI | GDGCHC | 1 cut(s) | 267 |
| SetI | ASST | 3 cut(s) | 40, 63, 166 |
| SfaNI | GCATC | 1 cut(s) | 169 |
| Sfr274I | CTCGAG | 1 cut(s) | 74 |
| SfuI | TTCGAA | 1 cut(s) | 26 |
| SinI | GGWCC | 2 cut(s) | 125, 209 |
| SlaI | CTCGAG | 1 cut(s) | 74 |
| SmaI | CCCGGG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 2 cut(s) | 17, 74 |
| SmoI | CTYRAG | 2 cut(s) | 17, 74 |
| Sse9I | AATT | 2 cut(s) | 152, 296 |
| SseBI | AGGCCT | 1 cut(s) | 192 |
| SsiI | CCGC | 5 cut(s) | 31, 92, 107, 301, 358 |
| SspMI | CTAG | 3 cut(s) | 165, 183, 373 |
| StuI | AGGCCT | 1 cut(s) | 192 |
| StyD4I | CCNGG | 2 cut(s) | 204, 205 |
| StyI | CCWWGG | 1 cut(s) | 164 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TaqI | TCGA | 3 cut(s) | 26, 75, 309 |
| TasI | AATT | 2 cut(s) | 152, 296 |
| TauI | GCSGC | 1 cut(s) | 360 |
| TseI | GCWGC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 1 cut(s) | 360 |
| TspMI | CCCGGG | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 2 cut(s) | 125, 209 |
| XhoI | CTCGAG | 1 cut(s) | 74 |
| XmaI | CCCGGG | 1 cut(s) | 205 |
| XmaJI | CCTAGG | 1 cut(s) | 164 |
| XmnI | GAANNNNTTC | 1 cut(s) | 192 |
| XspI | CTAG | 3 cut(s) | 165, 183, 373 |