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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 2 cut(s) | 83, 269 |
| AccBSI | CCGCTC | 1 cut(s) | 442 |
| AccII | CGCG | 4 cut(s) | 320, 342, 421, 423 |
| AcoI | YGGCCR | 5 cut(s) | 183, 302, 499, 574, 793 |
| AcsI | RAATTY | 1 cut(s) | 693 |
| AfaI | GTAC | 3 cut(s) | 106, 710, 736 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 219, 425, 554 |
| AgsI | TTSAA | 2 cut(s) | 259, 603 |
| AjnI | CCWGG | 1 cut(s) | 332 |
| AluBI | AGCT | 2 cut(s) | 328, 361 |
| AluI | AGCT | 2 cut(s) | 328, 361 |
| Alw21I | GWGCWC | 1 cut(s) | 678 |
| Alw26I | GTCTC | 2 cut(s) | 101, 165 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 2 cut(s) | 166, 446 |
| ApoI | RAATTY | 1 cut(s) | 693 |
| AspLEI | GCGC | 3 cut(s) | 166, 320, 423 |
| AspS9I | GGNCC | 5 cut(s) | 157, 158, 222, 610, 781 |
| AsuC2I | CCSGG | 1 cut(s) | 671 |
| AsuHPI | GGTGA | 3 cut(s) | 187, 429, 523 |
| BaeGI | GKGCMC | 4 cut(s) | 88, 161, 274, 300 |
| BalI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| BanI | GGYRCC | 2 cut(s) | 83, 269 |
| BanII | GRGCYC | 2 cut(s) | 161, 810 |
| BauI | CACGAG | 1 cut(s) | 354 |
| Bbv12I | GWGCWC | 1 cut(s) | 678 |
| BbvI | GCAGC | 2 cut(s) | 178, 433 |
| BccI | CCATC | 5 cut(s) | 200, 233, 313, 542, 548 |
| BceAI | ACGGC | 3 cut(s) | 783, 795, 808 |
| BciT130I | CCWGG | 1 cut(s) | 334 |
| BcnI | CCSGG | 1 cut(s) | 671 |
| BcoDI | GTCTC | 2 cut(s) | 101, 165 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BisI | GCNGC | 5 cut(s) | 167, 321, 447, 637, 796 |
| BlsI | GCNGC | 5 cut(s) | 168, 322, 448, 638, 797 |
| BmcAI | AGTACT | 2 cut(s) | 106, 710 |
| Bme1390I | CCNGG | 2 cut(s) | 334, 671 |
| BmgT120I | GGNCC | 5 cut(s) | 157, 158, 222, 610, 781 |
| BmiI | GGNNCC | 5 cut(s) | 6, 73, 85, 159, 271 |
| BmrFI | CCNGG | 2 cut(s) | 334, 671 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 87, 748 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 1 cut(s) | 113 |
| BpuMI | CCSGG | 1 cut(s) | 671 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 399 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 2 cut(s) | 606, 647 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 66, 67, 219, 425, 554 |
| Bse1I | ACTGG | 6 cut(s) | 130, 159, 305, 544, 691, 716 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseBI | CCWGG | 1 cut(s) | 334 |
| BseCI | ATCGAT | 2 cut(s) | 27, 399 |
| BseDI | CCNNGG | 2 cut(s) | 606, 647 |
| BseGI | GGATG | 2 cut(s) | 225, 305 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 219, 425, 554 |
| BseNI | ACTGG | 6 cut(s) | 130, 159, 305, 544, 691, 716 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BseSI | GKGCMC | 4 cut(s) | 88, 161, 274, 300 |
| BseX3I | CGGCCG | 1 cut(s) | 793 |
| BseXI | GCAGC | 2 cut(s) | 178, 433 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| Bsh1236I | CGCG | 4 cut(s) | 320, 342, 421, 423 |
| Bsh1285I | CGRYCG | 2 cut(s) | 622, 796 |
| BshNI | GGYRCC | 2 cut(s) | 83, 269 |
| BshVI | ATCGAT | 2 cut(s) | 27, 399 |
| BsiEI | CGRYCG | 2 cut(s) | 622, 796 |
| BsiHKAI | GWGCWC | 1 cut(s) | 678 |
| BsiSI | CCGG | 2 cut(s) | 182, 670 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 219, 425, 554 |
| BsmAI | GTCTC | 2 cut(s) | 101, 165 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 6 cut(s) | 88, 161, 274, 300, 678, 810 |
| Bsp143I | GATC | 2 cut(s) | 28, 400 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspDI | ATCGAT | 2 cut(s) | 27, 399 |
| BspFNI | CGCG | 4 cut(s) | 320, 342, 421, 423 |
| BspLI | GGNNCC | 5 cut(s) | 6, 73, 85, 159, 271 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 269 |
| BsrBI | CCGCTC | 1 cut(s) | 442 |
| BsrI | ACTGG | 6 cut(s) | 130, 159, 305, 544, 691, 716 |
| BssECI | CCNNGG | 2 cut(s) | 606, 647 |
| BssMI | GATC | 2 cut(s) | 28, 400 |
| BssSI | CACGAG | 1 cut(s) | 354 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2BI | CACGAG | 1 cut(s) | 354 |
| Bst2UI | CCWGG | 1 cut(s) | 334 |
| Bst4CI | ACNGT | 4 cut(s) | 104, 263, 620, 651 |
| Bst6I | CTCTTC | 1 cut(s) | 774 |
| BstC8I | GCNNGC | 5 cut(s) | 88, 209, 363, 444, 560 |
| BstDEI | CTNAG | 1 cut(s) | 703 |
| BstDSI | CCRYGG | 2 cut(s) | 606, 647 |
| BstF5I | GGATG | 2 cut(s) | 225, 305 |
| BstFNI | CGCG | 4 cut(s) | 320, 342, 421, 423 |
| BstHHI | GCGC | 3 cut(s) | 166, 320, 423 |
| BstKTI | GATC | 2 cut(s) | 31, 403 |
| BstMAI | GTCTC | 2 cut(s) | 101, 165 |
| BstMBI | GATC | 2 cut(s) | 28, 400 |
| BstMCI | CGRYCG | 2 cut(s) | 622, 796 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 386, 568 |
| BstNI | CCWGG | 1 cut(s) | 334 |
| BstSCI | CCNGG | 2 cut(s) | 332, 669 |
| BstSLI | GKGCMC | 4 cut(s) | 88, 161, 274, 300 |
| BstUI | CGCG | 4 cut(s) | 320, 342, 421, 423 |
| BstV1I | GCAGC | 2 cut(s) | 178, 433 |
| BstZI | CGGCCG | 1 cut(s) | 793 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 399 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 399 |
| BtgI | CCRYGG | 2 cut(s) | 606, 647 |
| BtsCI | GGATG | 2 cut(s) | 225, 305 |
| BtsIMutI | CAGTG | 3 cut(s) | 298, 537, 753 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 5 cut(s) | 88, 209, 363, 444, 560 |
| CfoI | GCGC | 3 cut(s) | 166, 320, 423 |
| Cfr13I | GGNCC | 5 cut(s) | 157, 158, 222, 610, 781 |
| ClaI | ATCGAT | 2 cut(s) | 27, 399 |
| Csp6I | GTAC | 3 cut(s) | 105, 709, 735 |
| CviAII | CATG | 5 cut(s) | 146, 248, 376, 572, 607 |
| CviQI | GTAC | 3 cut(s) | 105, 709, 735 |
| DdeI | CTNAG | 1 cut(s) | 703 |
| DpnI | GATC | 2 cut(s) | 30, 402 |
| DpnII | GATC | 2 cut(s) | 28, 400 |
| EaeI | YGGCCR | 5 cut(s) | 183, 302, 499, 574, 793 |
| EagI | CGGCCG | 1 cut(s) | 793 |
| Eam1104I | CTCTTC | 1 cut(s) | 774 |
| EarI | CTCTTC | 1 cut(s) | 774 |
| EciI | GGCGGA | 1 cut(s) | 705 |
| EclXI | CGGCCG | 1 cut(s) | 793 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 810 |
| Eco52I | CGGCCG | 1 cut(s) | 793 |
| EcoRII | CCWGG | 1 cut(s) | 332 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 810 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 5 cut(s) | 149, 251, 379, 575, 610 |
| FaiI | YATR | 7 cut(s) | 147, 204, 249, 377, 573, 608, 789 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 713, 745 |
| FatI | CATG | 5 cut(s) | 145, 247, 375, 571, 606 |
| FauI | CCCGC | 1 cut(s) | 95 |
| Fnu4HI | GCNGC | 5 cut(s) | 167, 321, 447, 637, 796 |
| FokI | GGATG | 2 cut(s) | 212, 292 |
| FriOI | GRGCYC | 2 cut(s) | 161, 810 |
| Fsp4HI | GCNGC | 5 cut(s) | 167, 321, 447, 637, 796 |
| GlaI | GCGC | 3 cut(s) | 165, 319, 422 |
| GluI | GCNGC | 5 cut(s) | 167, 321, 447, 637, 796 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| GsuI | CTGGAG | 1 cut(s) | 113 |
| HapII | CCGG | 2 cut(s) | 182, 670 |
| HhaI | GCGC | 3 cut(s) | 166, 320, 423 |
| Hin1II | CATG | 5 cut(s) | 149, 251, 379, 575, 610 |
| Hin6I | GCGC | 3 cut(s) | 164, 318, 421 |
| HinP1I | GCGC | 3 cut(s) | 164, 318, 421 |
| HinfI | GANTC | 5 cut(s) | 173, 244, 277, 584, 766 |
| HpaII | CCGG | 2 cut(s) | 182, 670 |
| HphI | GGTGA | 3 cut(s) | 187, 429, 523 |
| Hpy166II | GTNNAC | 1 cut(s) | 437 |
| Hpy188I | TCNGA | 3 cut(s) | 152, 239, 812 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 341, 370 |
| Hpy8I | GTNNAC | 1 cut(s) | 437 |
| Hpy99I | CGWCG | 1 cut(s) | 222 |
| HpyAV | CCTTC | 2 cut(s) | 208, 234 |
| HpyCH4III | ACNGT | 4 cut(s) | 104, 263, 620, 651 |
| HpyCH4V | TGCA | 1 cut(s) | 571 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 386, 568 |
| HpyF3I | CTNAG | 1 cut(s) | 703 |
| Hsp92II | CATG | 5 cut(s) | 149, 251, 379, 575, 610 |
| HspAI | GCGC | 3 cut(s) | 164, 318, 421 |
| Kzo9I | GATC | 2 cut(s) | 28, 400 |
| LmnI | GCTCC | 2 cut(s) | 10, 673 |
| Lsp1109I | GCAGC | 2 cut(s) | 178, 433 |
| LweI | GCATC | 2 cut(s) | 87, 748 |
| MaeIII | GTNAC | 1 cut(s) | 589 |
| MalI | GATC | 2 cut(s) | 30, 402 |
| MbiI | CCGCTC | 1 cut(s) | 442 |
| MboI | GATC | 2 cut(s) | 28, 400 |
| MboII | GAAGA | 6 cut(s) | 28, 47, 50, 407, 721, 761 |
| MhlI | GDGCHC | 6 cut(s) | 88, 161, 274, 300, 678, 810 |
| MlsI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| MluCI | AATT | 2 cut(s) | 578, 693 |
| MluNI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| MlyI | GAGTC | 4 cut(s) | 167, 238, 578, 760 |
| MnlI | CCTC | 5 cut(s) | 137, 245, 319, 751, 794 |
| Mox20I | TGGCCA | 3 cut(s) | 304, 501, 576 |
| MscI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| Msp20I | TGGCCA | 3 cut(s) | 304, 501, 576 |
| MspA1I | CMGCKG | 1 cut(s) | 636 |
| MspI | CCGG | 2 cut(s) | 182, 670 |
| MspR9I | CCNGG | 2 cut(s) | 334, 671 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 334 |
| MvnI | CGCG | 4 cut(s) | 320, 342, 421, 423 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 386, 568 |
| NciI | CCSGG | 1 cut(s) | 671 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 2 cut(s) | 28, 400 |
| NlaIII | CATG | 5 cut(s) | 149, 251, 379, 575, 610 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 73, 85, 159, 271 |
| NmuCI | GTSAC | 1 cut(s) | 589 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 346 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 1 cut(s) | 277 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PkrI | GCNGC | 5 cut(s) | 168, 322, 448, 638, 797 |
| PleI | GAGTC | 4 cut(s) | 167, 238, 578, 760 |
| PpsI | GAGTC | 4 cut(s) | 167, 238, 578, 760 |
| Psp6I | CCWGG | 1 cut(s) | 332 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| PspGI | CCWGG | 1 cut(s) | 332 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 73, 85, 159, 271 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 5 cut(s) | 157, 158, 222, 610, 781 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 3 cut(s) | 106, 710, 736 |
| RsaNI | GTAC | 3 cut(s) | 105, 709, 735 |
| SatI | GCNGC | 5 cut(s) | 167, 321, 447, 637, 796 |
| Sau3AI | GATC | 2 cut(s) | 28, 400 |
| Sau96I | GGNCC | 5 cut(s) | 157, 158, 222, 610, 781 |
| ScaI | AGTACT | 2 cut(s) | 106, 710 |
| SchI | GAGTC | 4 cut(s) | 167, 238, 578, 760 |
| ScrFI | CCNGG | 2 cut(s) | 334, 671 |
| SduI | GDGCHC | 6 cut(s) | 88, 161, 274, 300, 678, 810 |
| SetI | ASST | 6 cut(s) | 57, 200, 330, 363, 385, 485 |
| SfaNI | GCATC | 2 cut(s) | 87, 748 |
| Sse9I | AATT | 2 cut(s) | 578, 693 |
| StyD4I | CCNGG | 2 cut(s) | 332, 669 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 4 cut(s) | 104, 263, 620, 651 |
| TaqI | TCGA | 5 cut(s) | 27, 283, 399, 493, 582 |
| TasI | AATT | 2 cut(s) | 578, 693 |
| TatI | WGTACW | 3 cut(s) | 104, 708, 734 |
| TauI | GCSGC | 3 cut(s) | 323, 639, 798 |
| TfiI | GAWTC | 1 cut(s) | 277 |
| TscAI | CASTG | 3 cut(s) | 305, 544, 760 |
| TseFI | GTSAC | 1 cut(s) | 589 |
| TseI | GCWGC | 2 cut(s) | 166, 446 |
| Tsp45I | GTSAC | 1 cut(s) | 589 |
| TspDTI | ATGAA | 3 cut(s) | 63, 401, 715 |
| TspRI | CASTG | 3 cut(s) | 305, 544, 760 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| XapI | RAATTY | 1 cut(s) | 693 |
| ZrmI | AGTACT | 2 cut(s) | 106, 710 |