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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 342 |
| Acc65I | GGTACC | 1 cut(s) | 511 |
| AccB1I | GGYRCC | 1 cut(s) | 511 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 77, 110 |
| AccI | GTMKAC | 1 cut(s) | 1046 |
| AccII | CGCG | 7 cut(s) | 7, 45, 143, 765, 992, 1042, 1111 |
| AclWI | GGATC | 3 cut(s) | 293, 306, 518 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AcuI | CTGAAG | 3 cut(s) | 396, 603, 809 |
| AfaI | GTAC | 3 cut(s) | 513, 729, 973 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 25, 58, 59, 77, 110, 587, 838, 991, 1020 |
| AgsI | TTSAA | 5 cut(s) | 158, 848, 937, 968, 978 |
| AjnI | CCWGG | 5 cut(s) | 192, 301, 475, 837, 1084 |
| AluBI | AGCT | 4 cut(s) | 23, 497, 616, 890 |
| AluI | AGCT | 4 cut(s) | 23, 497, 616, 890 |
| AlwI | GGATC | 3 cut(s) | 293, 306, 518 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 110 |
| AoxI | GGCC | 7 cut(s) | 282, 348, 455, 462, 738, 1011, 1022 |
| Asp718I | GGTACC | 1 cut(s) | 511 |
| AspLEI | GCGC | 5 cut(s) | 7, 222, 292, 343, 1113 |
| AspS9I | GGNCC | 6 cut(s) | 232, 283, 455, 625, 739, 1057 |
| AsuC2I | CCSGG | 3 cut(s) | 747, 1054, 1138 |
| AsuHPI | GGTGA | 3 cut(s) | 148, 554, 565 |
| AvaII | GGWCC | 3 cut(s) | 232, 625, 1057 |
| AxyI | CCTNAGG | 1 cut(s) | 426 |
| BamHI | GGATCC | 1 cut(s) | 298 |
| BanI | GGYRCC | 1 cut(s) | 511 |
| BanII | GRGCYC | 2 cut(s) | 13, 150 |
| BauI | CACGAG | 1 cut(s) | 331 |
| BbsI | GAAGAC | 2 cut(s) | 137, 552 |
| BccI | CCATC | 4 cut(s) | 750, 953, 993, 1135 |
| BceAI | ACGGC | 1 cut(s) | 210 |
| BciT130I | CCWGG | 5 cut(s) | 194, 303, 477, 839, 1086 |
| BciVI | GTATCC | 1 cut(s) | 1116 |
| BcnI | CCSGG | 3 cut(s) | 747, 1054, 1138 |
| BfaI | CTAG | 2 cut(s) | 903, 1153 |
| BfoI | RGCGCY | 1 cut(s) | 293 |
| BfuI | GTATCC | 1 cut(s) | 1116 |
| BmcAI | AGTACT | 1 cut(s) | 973 |
| Bme1390I | CCNGG | 8 cut(s) | 194, 303, 477, 747, 839, 1054, 1086, 1138 |
| Bme18I | GGWCC | 3 cut(s) | 232, 625, 1057 |
| BmgT120I | GGNCC | 6 cut(s) | 232, 283, 455, 625, 739, 1057 |
| BmiI | GGNNCC | 8 cut(s) | 147, 234, 300, 432, 513, 564, 627, 1058 |
| BmrFI | CCNGG | 8 cut(s) | 194, 303, 477, 747, 839, 1054, 1086, 1138 |
| BmsI | GCATC | 4 cut(s) | 328, 406, 664, 745 |
| BpiI | GAAGAC | 2 cut(s) | 137, 552 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1097, 1129 |
| BpmI | CTGGAG | 2 cut(s) | 39, 1107 |
| Bpu10I | CCTNAGC | 2 cut(s) | 24, 693 |
| BpuEI | CTTGAG | 1 cut(s) | 627 |
| BpuMI | CCSGG | 3 cut(s) | 747, 1054, 1138 |
| BsaJI | CCNNGG | 5 cut(s) | 192, 248, 1040, 1053, 1084 |
| BsaWI | WCCGGW | 1 cut(s) | 358 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 582, 612 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 25, 58, 59, 77, 110, 587, 838, 991, 1020 |
| Bse1I | ACTGG | 3 cut(s) | 285, 536, 714 |
| Bse21I | CCTNAGG | 1 cut(s) | 426 |
| Bse3DI | GCAATG | 1 cut(s) | 660 |
| BseBI | CCWGG | 5 cut(s) | 194, 303, 477, 839, 1086 |
| BseDI | CCNNGG | 5 cut(s) | 192, 248, 1040, 1053, 1084 |
| BseGI | GGATG | 3 cut(s) | 265, 742, 922 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 25, 58, 59, 77, 110, 587, 838, 991, 1020 |
| BseMI | GCAATG | 1 cut(s) | 660 |
| BseMII | CTCAG | 3 cut(s) | 38, 417, 684 |
| BseNI | ACTGG | 3 cut(s) | 285, 536, 714 |
| BseX3I | CGGCCG | 1 cut(s) | 462 |
| BseYI | CCCAGC | 1 cut(s) | 103 |
| BsgI | GTGCAG | 1 cut(s) | 383 |
| Bsh1236I | CGCG | 7 cut(s) | 7, 45, 143, 765, 992, 1042, 1111 |
| Bsh1285I | CGRYCG | 2 cut(s) | 438, 465 |
| BshFI | GGCC | 7 cut(s) | 284, 350, 457, 464, 740, 1013, 1024 |
| BshNI | GGYRCC | 1 cut(s) | 511 |
| BsiEI | CGRYCG | 2 cut(s) | 438, 465 |
| BsiSI | CCGG | 4 cut(s) | 359, 747, 1053, 1138 |
| BslFI | GGGAC | 1 cut(s) | 611 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 25, 58, 59, 77, 110, 587, 838, 991, 1020 |
| BsmFI | GGGAC | 1 cut(s) | 611 |
| BsnI | GGCC | 7 cut(s) | 284, 350, 457, 464, 740, 1013, 1024 |
| Bsp1286I | GDGCHC | 2 cut(s) | 13, 150 |
| Bsp143I | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| Bsp19I | CCATGG | 1 cut(s) | 248 |
| Bsp68I | TCGCGA | 1 cut(s) | 765 |
| BspANI | GGCC | 7 cut(s) | 284, 350, 457, 464, 740, 1013, 1024 |
| BspCNI | CTCAG | 3 cut(s) | 37, 418, 685 |
| BspFNI | CGCG | 7 cut(s) | 7, 45, 143, 765, 992, 1042, 1111 |
| BspLI | GGNNCC | 8 cut(s) | 147, 234, 300, 432, 513, 564, 627, 1058 |
| BspPI | GGATC | 3 cut(s) | 293, 306, 518 |
| BspT107I | GGYRCC | 1 cut(s) | 511 |
| BsrDI | GCAATG | 1 cut(s) | 660 |
| BsrI | ACTGG | 3 cut(s) | 285, 536, 714 |
| BssECI | CCNNGG | 5 cut(s) | 192, 248, 1040, 1053, 1084 |
| BssMI | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| BssSI | CACGAG | 1 cut(s) | 331 |
| BssT1I | CCWWGG | 1 cut(s) | 248 |
| Bst2BI | CACGAG | 1 cut(s) | 331 |
| Bst2UI | CCWGG | 5 cut(s) | 194, 303, 477, 839, 1086 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 380, 1030 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 5 cut(s) | 9, 214, 218, 325, 1115 |
| BstDEI | CTNAG | 3 cut(s) | 24, 426, 693 |
| BstDSI | CCRYGG | 2 cut(s) | 248, 1040 |
| BstF5I | GGATG | 3 cut(s) | 265, 742, 922 |
| BstFNI | CGCG | 7 cut(s) | 7, 45, 143, 765, 992, 1042, 1111 |
| BstH2I | RGCGCY | 1 cut(s) | 293 |
| BstHHI | GCGC | 5 cut(s) | 7, 222, 292, 343, 1113 |
| BstKTI | GATC | 5 cut(s) | 141, 277, 301, 438, 526 |
| BstMBI | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| BstMCI | CGRYCG | 2 cut(s) | 438, 465 |
| BstNI | CCWGG | 5 cut(s) | 194, 303, 477, 839, 1086 |
| BstSCI | CCNGG | 8 cut(s) | 192, 301, 475, 745, 837, 1052, 1084, 1136 |
| BstUI | CGCG | 7 cut(s) | 7, 45, 143, 765, 992, 1042, 1111 |
| BstV2I | GAAGAC | 2 cut(s) | 137, 552 |
| BstX2I | RGATCY | 1 cut(s) | 298 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 208 |
| BstYI | RGATCY | 1 cut(s) | 298 |
| BstZI | CGGCCG | 1 cut(s) | 462 |
| Bsu36I | CCTNAGG | 1 cut(s) | 426 |
| BsuI | GTATCC | 1 cut(s) | 1116 |
| BsuRI | GGCC | 7 cut(s) | 284, 350, 457, 464, 740, 1013, 1024 |
| BtgI | CCRYGG | 2 cut(s) | 248, 1040 |
| BtgZI | GCGATG | 1 cut(s) | 351 |
| BtsCI | GGATG | 3 cut(s) | 265, 742, 922 |
| BtsI | GCAGTG | 1 cut(s) | 201 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 240 |
| BtuMI | TCGCGA | 1 cut(s) | 765 |
| Cac8I | GCNNGC | 5 cut(s) | 9, 214, 218, 325, 1115 |
| CaiI | CAGNNNCTG | 1 cut(s) | 110 |
| CfoI | GCGC | 5 cut(s) | 7, 222, 292, 343, 1113 |
| Cfr13I | GGNCC | 6 cut(s) | 232, 283, 455, 625, 739, 1057 |
| Cfr42I | CCGCGG | 1 cut(s) | 1043 |
| CseI | GACGC | 1 cut(s) | 908 |
| Csp6I | GTAC | 3 cut(s) | 512, 728, 972 |
| CviAII | CATG | 3 cut(s) | 249, 550, 653 |
| CviQI | GTAC | 3 cut(s) | 512, 728, 972 |
| DdeI | CTNAG | 3 cut(s) | 24, 426, 693 |
| DpnI | GATC | 5 cut(s) | 140, 276, 300, 437, 525 |
| DpnII | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| EagI | CGGCCG | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 1013 |
| EclXI | CGGCCG | 1 cut(s) | 462 |
| Eco130I | CCWWGG | 1 cut(s) | 248 |
| Eco147I | AGGCCT | 1 cut(s) | 1024 |
| Eco24I | GRGCYC | 2 cut(s) | 13, 150 |
| Eco47I | GGWCC | 3 cut(s) | 232, 625, 1057 |
| Eco52I | CGGCCG | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 3 cut(s) | 396, 603, 809 |
| Eco81I | CCTNAGG | 1 cut(s) | 426 |
| EcoO109I | RGGNCCY | 1 cut(s) | 455 |
| EcoRII | CCWGG | 5 cut(s) | 192, 301, 475, 837, 1084 |
| EcoT14I | CCWWGG | 1 cut(s) | 248 |
| EcoT38I | GRGCYC | 2 cut(s) | 13, 150 |
| ErhI | CCWWGG | 1 cut(s) | 248 |
| FaeI | CATG | 3 cut(s) | 252, 553, 656 |
| FaiI | YATR | 7 cut(s) | 250, 296, 371, 551, 635, 654, 812 |
| FaqI | GGGAC | 1 cut(s) | 611 |
| FatI | CATG | 3 cut(s) | 248, 549, 652 |
| FauI | CCCGC | 2 cut(s) | 328, 580 |
| FblI | GTMKAC | 1 cut(s) | 1046 |
| FokI | GGATG | 3 cut(s) | 272, 729, 929 |
| FriOI | GRGCYC | 2 cut(s) | 13, 150 |
| FspBI | CTAG | 2 cut(s) | 903, 1153 |
| FspI | TGCGCA | 1 cut(s) | 342 |
| GlaI | GCGC | 5 cut(s) | 6, 221, 291, 342, 1112 |
| GsaI | CCCAGC | 1 cut(s) | 107 |
| GsuI | CTGGAG | 2 cut(s) | 39, 1107 |
| HaeII | RGCGCY | 1 cut(s) | 293 |
| HaeIII | GGCC | 7 cut(s) | 284, 350, 457, 464, 740, 1013, 1024 |
| HapII | CCGG | 4 cut(s) | 359, 747, 1053, 1138 |
| HgaI | GACGC | 1 cut(s) | 908 |
| HhaI | GCGC | 5 cut(s) | 7, 222, 292, 343, 1113 |
| Hin1II | CATG | 3 cut(s) | 252, 553, 656 |
| Hin6I | GCGC | 5 cut(s) | 5, 220, 290, 341, 1111 |
| HinP1I | GCGC | 5 cut(s) | 5, 220, 290, 341, 1111 |
| HinfI | GANTC | 5 cut(s) | 161, 472, 556, 947, 1106 |
| HpaII | CCGG | 4 cut(s) | 359, 747, 1053, 1138 |
| HphI | GGTGA | 3 cut(s) | 148, 554, 565 |
| Hpy166II | GTNNAC | 2 cut(s) | 728, 1047 |
| Hpy188I | TCNGA | 5 cut(s) | 172, 232, 415, 828, 1061 |
| Hpy188III | TCNNGA | 9 cut(s) | 56, 120, 560, 581, 644, 705, 764, 914, 1120 |
| Hpy8I | GTNNAC | 2 cut(s) | 728, 1047 |
| Hpy99I | CGWCG | 1 cut(s) | 179 |
| HpyAV | CCTTC | 4 cut(s) | 392, 420, 468, 711 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 380, 1030 |
| HpyCH4IV | ACGT | 1 cut(s) | 576 |
| HpyCH4V | TGCA | 3 cut(s) | 364, 419, 814 |
| HpyF3I | CTNAG | 3 cut(s) | 24, 426, 693 |
| HpySE526I | ACGT | 1 cut(s) | 576 |
| Hsp92II | CATG | 3 cut(s) | 252, 553, 656 |
| HspAI | GCGC | 5 cut(s) | 5, 220, 290, 341, 1111 |
| KpnI | GGTACC | 1 cut(s) | 515 |
| KspI | CCGCGG | 1 cut(s) | 1043 |
| Kzo9I | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| LmnI | GCTCC | 4 cut(s) | 145, 562, 688, 749 |
| LweI | GCATC | 4 cut(s) | 328, 406, 664, 745 |
| MaeI | CTAG | 2 cut(s) | 903, 1153 |
| MaeII | ACGT | 1 cut(s) | 576 |
| MalI | GATC | 5 cut(s) | 140, 276, 300, 437, 525 |
| MboI | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| MboII | GAAGA | 9 cut(s) | 142, 156, 170, 266, 302, 407, 557, 605, 815 |
| MfeI | CAATTG | 2 cut(s) | 344, 854 |
| MflI | RGATCY | 1 cut(s) | 298 |
| MhlI | GDGCHC | 2 cut(s) | 13, 150 |
| MluCI | AATT | 5 cut(s) | 344, 354, 389, 854, 937 |
| MlyI | GAGTC | 2 cut(s) | 481, 1115 |
| MmeI | TCCRAC | 1 cut(s) | 1084 |
| MspA1I | CMGCKG | 2 cut(s) | 110, 1042 |
| MspI | CCGG | 4 cut(s) | 359, 747, 1053, 1138 |
| MspR9I | CCNGG | 8 cut(s) | 194, 303, 477, 747, 839, 1054, 1086, 1138 |
| MunI | CAATTG | 2 cut(s) | 344, 854 |
| MvaI | CCWGG | 5 cut(s) | 194, 303, 477, 839, 1086 |
| MvnI | CGCG | 7 cut(s) | 7, 45, 143, 765, 992, 1042, 1111 |
| NciI | CCSGG | 3 cut(s) | 747, 1054, 1138 |
| NcoI | CCATGG | 1 cut(s) | 248 |
| NdeII | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| NlaIII | CATG | 3 cut(s) | 252, 553, 656 |
| NlaIV | GGNNCC | 8 cut(s) | 147, 234, 300, 432, 513, 564, 627, 1058 |
| NruI | TCGCGA | 1 cut(s) | 765 |
| NsbI | TGCGCA | 1 cut(s) | 342 |
| PceI | AGGCCT | 1 cut(s) | 1024 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 42, 147 |
| PfeI | GAWTC | 3 cut(s) | 161, 556, 947 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 77, 110 |
| PfoI | TCCNGGA | 2 cut(s) | 745, 837 |
| Ple19I | CGATCG | 1 cut(s) | 438 |
| PleI | GAGTC | 2 cut(s) | 480, 1114 |
| PpsI | GAGTC | 2 cut(s) | 480, 1114 |
| Psp6I | CCWGG | 5 cut(s) | 192, 301, 475, 837, 1084 |
| PspFI | CCCAGC | 1 cut(s) | 103 |
| PspGI | CCWGG | 5 cut(s) | 192, 301, 475, 837, 1084 |
| PspN4I | GGNNCC | 8 cut(s) | 147, 234, 300, 432, 513, 564, 627, 1058 |
| PspPI | GGNCC | 6 cut(s) | 232, 283, 455, 625, 739, 1057 |
| PstNI | CAGNNNCTG | 1 cut(s) | 110 |
| PsuI | RGATCY | 1 cut(s) | 298 |
| PvuI | CGATCG | 1 cut(s) | 438 |
| RruI | TCGCGA | 1 cut(s) | 765 |
| RsaI | GTAC | 3 cut(s) | 513, 729, 973 |
| RsaNI | GTAC | 3 cut(s) | 512, 728, 972 |
| SacII | CCGCGG | 1 cut(s) | 1043 |
| Sau3AI | GATC | 5 cut(s) | 138, 274, 298, 435, 523 |
| Sau96I | GGNCC | 6 cut(s) | 232, 283, 455, 625, 739, 1057 |
| ScaI | AGTACT | 1 cut(s) | 973 |
| SchI | GAGTC | 2 cut(s) | 481, 1115 |
| ScrFI | CCNGG | 8 cut(s) | 194, 303, 477, 747, 839, 1054, 1086, 1138 |
| SduI | GDGCHC | 2 cut(s) | 13, 150 |
| SfaNI | GCATC | 4 cut(s) | 328, 406, 664, 745 |
| Sfr303I | CCGCGG | 1 cut(s) | 1043 |
| SgrBI | CCGCGG | 1 cut(s) | 1043 |
| SinI | GGWCC | 3 cut(s) | 232, 625, 1057 |
| SmlI | CTYRAG | 1 cut(s) | 642 |
| SmoI | CTYRAG | 1 cut(s) | 642 |
| Sse9I | AATT | 5 cut(s) | 344, 354, 389, 854, 937 |
| SseBI | AGGCCT | 1 cut(s) | 1024 |
| SspMI | CTAG | 2 cut(s) | 903, 1153 |
| StuI | AGGCCT | 1 cut(s) | 1024 |
| StyD4I | CCNGG | 8 cut(s) | 192, 301, 475, 745, 837, 1052, 1084, 1136 |
| StyI | CCWWGG | 1 cut(s) | 248 |
| TaaI | ACNGT | 3 cut(s) | 136, 380, 1030 |
| TaiI | ACGT | 1 cut(s) | 579 |
| TaqI | TCGA | 2 cut(s) | 277, 732 |
| TasI | AATT | 5 cut(s) | 344, 354, 389, 854, 937 |
| TatI | WGTACW | 2 cut(s) | 727, 971 |
| TauI | GCSGC | 3 cut(s) | 110, 443, 467 |
| TfiI | GAWTC | 3 cut(s) | 161, 556, 947 |
| TscAI | CASTG | 2 cut(s) | 208, 247 |
| TspDTI | ATGAA | 3 cut(s) | 156, 276, 933 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| TspRI | CASTG | 2 cut(s) | 208, 247 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 77, 110 |
| VpaK11BI | GGWCC | 3 cut(s) | 232, 625, 1057 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 26 |
| XmiI | GTMKAC | 1 cut(s) | 1046 |
| XspI | CTAG | 2 cut(s) | 903, 1153 |
| ZrmI | AGTACT | 1 cut(s) | 973 |