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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 4 cut(s) | 100, 109, 204, 361 |
| AciI | CCGC | 8 cut(s) | 18, 68, 89, 107, 183, 186, 294, 359 |
| AclWI | GGATC | 4 cut(s) | 209, 221, 264, 337 |
| AcoI | YGGCCR | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 82, 392 |
| AgeI | ACCGGT | 1 cut(s) | 262 |
| AluBI | AGCT | 1 cut(s) | 31 |
| AluI | AGCT | 1 cut(s) | 31 |
| AlwI | GGATC | 4 cut(s) | 209, 221, 264, 337 |
| Ama87I | CYCGRG | 2 cut(s) | 77, 145 |
| AoxI | GGCC | 5 cut(s) | 119, 138, 192, 285, 382 |
| AsiGI | ACCGGT | 1 cut(s) | 262 |
| AspLEI | GCGC | 4 cut(s) | 100, 111, 204, 329 |
| AspS9I | GGNCC | 5 cut(s) | 139, 193, 265, 286, 383 |
| AsuC2I | CCSGG | 3 cut(s) | 118, 174, 280 |
| AsuHPI | GGTGA | 2 cut(s) | 283, 311 |
| AvaI | CYCGRG | 2 cut(s) | 77, 145 |
| AvaII | GGWCC | 1 cut(s) | 265 |
| BaeGI | GKGCMC | 1 cut(s) | 118 |
| BanII | GRGCYC | 1 cut(s) | 106 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| BceAI | ACGGC | 1 cut(s) | 96 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 72, 356, 377, 390, 411 |
| BcnI | CCSGG | 3 cut(s) | 118, 174, 280 |
| BfoI | RGCGCY | 1 cut(s) | 330 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 191 |
| BisI | GCNGC | 3 cut(s) | 183, 186, 359 |
| BlsI | GCNGC | 3 cut(s) | 184, 187, 360 |
| Bme1390I | CCNGG | 3 cut(s) | 118, 174, 280 |
| Bme18I | GGWCC | 1 cut(s) | 265 |
| BmeT110I | CYCGRG | 2 cut(s) | 77, 145 |
| BmgT120I | GGNCC | 5 cut(s) | 139, 193, 265, 286, 383 |
| BmiI | GGNNCC | 3 cut(s) | 87, 141, 385 |
| BmrFI | CCNGG | 3 cut(s) | 118, 174, 280 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BpuMI | CCSGG | 3 cut(s) | 118, 174, 280 |
| BsaJI | CCNNGG | 3 cut(s) | 172, 189, 230 |
| BsaWI | WCCGGW | 2 cut(s) | 262, 392 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 82, 392 |
| Bse118I | RCCGGY | 6 cut(s) | 82, 121, 136, 262, 296, 332 |
| Bse3DI | GCAATG | 1 cut(s) | 177 |
| BseDI | CCNNGG | 3 cut(s) | 172, 189, 230 |
| BseGI | GGATG | 1 cut(s) | 7 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 82, 392 |
| BseMI | GCAATG | 1 cut(s) | 177 |
| BseSI | GKGCMC | 1 cut(s) | 118 |
| BseX3I | CGGCCG | 1 cut(s) | 119 |
| Bsh1236I | CGCG | 4 cut(s) | 100, 109, 204, 361 |
| Bsh1285I | CGRYCG | 3 cut(s) | 122, 208, 263 |
| BshFI | GGCC | 5 cut(s) | 121, 140, 194, 287, 384 |
| BshTI | ACCGGT | 1 cut(s) | 262 |
| BsiEI | CGRYCG | 3 cut(s) | 122, 208, 263 |
| BsiHKCI | CYCGRG | 2 cut(s) | 77, 145 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 82, 392 |
| BsnI | GGCC | 5 cut(s) | 121, 140, 194, 287, 384 |
| BsoBI | CYCGRG | 2 cut(s) | 77, 145 |
| Bsp1286I | GDGCHC | 2 cut(s) | 106, 118 |
| Bsp143I | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| Bsp19I | CCATGG | 1 cut(s) | 230 |
| BspACI | CCGC | 8 cut(s) | 18, 68, 89, 107, 183, 186, 294, 359 |
| BspANI | GGCC | 5 cut(s) | 121, 140, 194, 287, 384 |
| BspFNI | CGCG | 4 cut(s) | 100, 109, 204, 361 |
| BspLI | GGNNCC | 3 cut(s) | 87, 141, 385 |
| BspPI | GGATC | 4 cut(s) | 209, 221, 264, 337 |
| BsrDI | GCAATG | 1 cut(s) | 177 |
| BsrFI | RCCGGY | 6 cut(s) | 82, 121, 136, 262, 296, 332 |
| BssAI | RCCGGY | 6 cut(s) | 82, 121, 136, 262, 296, 332 |
| BssECI | CCNNGG | 3 cut(s) | 172, 189, 230 |
| BssMI | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| BssT1I | CCWWGG | 2 cut(s) | 189, 230 |
| BstC8I | GCNNGC | 4 cut(s) | 40, 84, 102, 138 |
| BstDSI | CCRYGG | 1 cut(s) | 230 |
| BstF5I | GGATG | 1 cut(s) | 7 |
| BstFNI | CGCG | 4 cut(s) | 100, 109, 204, 361 |
| BstH2I | RGCGCY | 1 cut(s) | 330 |
| BstHHI | GCGC | 4 cut(s) | 100, 111, 204, 329 |
| BstKTI | GATC | 6 cut(s) | 208, 217, 229, 259, 345, 403 |
| BstMBI | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| BstMCI | CGRYCG | 3 cut(s) | 122, 208, 263 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 88, 97, 106, 191, 293, 333, 367 |
| BstNSI | RCATGY | 1 cut(s) | 377 |
| BstSCI | CCNGG | 3 cut(s) | 116, 172, 278 |
| BstSLI | GKGCMC | 1 cut(s) | 118 |
| BstUI | CGCG | 4 cut(s) | 100, 109, 204, 361 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstZI | CGGCCG | 1 cut(s) | 119 |
| BsuRI | GGCC | 5 cut(s) | 121, 140, 194, 287, 384 |
| BtgI | CCRYGG | 1 cut(s) | 230 |
| BtgZI | GCGATG | 1 cut(s) | 294 |
| BtsCI | GGATG | 1 cut(s) | 7 |
| Cac8I | GCNNGC | 4 cut(s) | 40, 84, 102, 138 |
| CfoI | GCGC | 4 cut(s) | 100, 111, 204, 329 |
| Cfr10I | RCCGGY | 6 cut(s) | 82, 121, 136, 262, 296, 332 |
| Cfr13I | GGNCC | 5 cut(s) | 139, 193, 265, 286, 383 |
| CspAI | ACCGGT | 1 cut(s) | 262 |
| CviAII | CATG | 2 cut(s) | 231, 374 |
| DpnI | GATC | 6 cut(s) | 207, 216, 228, 258, 344, 402 |
| DpnII | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| EaeI | YGGCCR | 1 cut(s) | 119 |
| EagI | CGGCCG | 1 cut(s) | 119 |
| EciI | GGCGGA | 1 cut(s) | 57 |
| EclXI | CGGCCG | 1 cut(s) | 119 |
| Eco130I | CCWWGG | 2 cut(s) | 189, 230 |
| Eco24I | GRGCYC | 1 cut(s) | 106 |
| Eco47I | GGWCC | 1 cut(s) | 265 |
| Eco52I | CGGCCG | 1 cut(s) | 119 |
| Eco88I | CYCGRG | 2 cut(s) | 77, 145 |
| EcoO109I | RGGNCCY | 1 cut(s) | 286 |
| EcoT14I | CCWWGG | 2 cut(s) | 189, 230 |
| EcoT38I | GRGCYC | 1 cut(s) | 106 |
| ErhI | CCWWGG | 2 cut(s) | 189, 230 |
| FaeI | CATG | 2 cut(s) | 234, 377 |
| FaiI | YATR | 5 cut(s) | 15, 200, 232, 375, 405 |
| FatI | CATG | 2 cut(s) | 230, 373 |
| FauI | CCCGC | 1 cut(s) | 114 |
| Fnu4HI | GCNGC | 3 cut(s) | 183, 186, 359 |
| FriOI | GRGCYC | 1 cut(s) | 106 |
| Fsp4HI | GCNGC | 3 cut(s) | 183, 186, 359 |
| GlaI | GCGC | 4 cut(s) | 99, 110, 203, 328 |
| GluI | GCNGC | 3 cut(s) | 183, 186, 359 |
| HaeII | RGCGCY | 1 cut(s) | 330 |
| HaeIII | GGCC | 5 cut(s) | 121, 140, 194, 287, 384 |
| HhaI | GCGC | 4 cut(s) | 100, 111, 204, 329 |
| Hin1II | CATG | 2 cut(s) | 234, 377 |
| Hin6I | GCGC | 4 cut(s) | 98, 109, 202, 327 |
| HinP1I | GCGC | 4 cut(s) | 98, 109, 202, 327 |
| HinfI | GANTC | 2 cut(s) | 150, 389 |
| HphI | GGTGA | 2 cut(s) | 283, 311 |
| Hpy188III | TCNNGA | 1 cut(s) | 147 |
| HpyAV | CCTTC | 2 cut(s) | 277, 296 |
| HpyCH4IV | ACGT | 1 cut(s) | 54 |
| HpyCH4V | TGCA | 3 cut(s) | 59, 377, 398 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 88, 97, 106, 191, 293, 333, 367 |
| HpySE526I | ACGT | 1 cut(s) | 54 |
| Hsp92II | CATG | 2 cut(s) | 234, 377 |
| HspAI | GCGC | 4 cut(s) | 98, 109, 202, 327 |
| KroI | GCCGGC | 2 cut(s) | 82, 136 |
| KroNI | GCCGGC | 2 cut(s) | 84, 138 |
| Kzo9I | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| LmnI | GCTCC | 2 cut(s) | 91, 318 |
| MaeII | ACGT | 1 cut(s) | 54 |
| MaeIII | GTNAC | 1 cut(s) | 362 |
| MalI | GATC | 6 cut(s) | 207, 216, 228, 258, 344, 402 |
| MboI | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| MboII | GAAGA | 2 cut(s) | 62, 251 |
| MfeI | CAATTG | 1 cut(s) | 378 |
| MhlI | GDGCHC | 2 cut(s) | 106, 118 |
| MluCI | AATT | 1 cut(s) | 378 |
| MlyI | GAGTC | 1 cut(s) | 159 |
| MnlI | CCTC | 7 cut(s) | 81, 154, 228, 278, 299, 356, 362 |
| MroNI | GCCGGC | 2 cut(s) | 82, 136 |
| MspR9I | CCNGG | 3 cut(s) | 118, 174, 280 |
| MunI | CAATTG | 1 cut(s) | 378 |
| MvnI | CGCG | 4 cut(s) | 100, 109, 204, 361 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 88, 97, 106, 191, 293, 333, 367 |
| NaeI | GCCGGC | 2 cut(s) | 84, 138 |
| NciI | CCSGG | 3 cut(s) | 118, 174, 280 |
| NcoI | CCATGG | 1 cut(s) | 230 |
| NdeII | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| NgoMIV | GCCGGC | 2 cut(s) | 82, 136 |
| NlaIII | CATG | 2 cut(s) | 234, 377 |
| NlaIV | GGNNCC | 3 cut(s) | 87, 141, 385 |
| NspI | RCATGY | 1 cut(s) | 377 |
| PaeR7I | CTCGAG | 1 cut(s) | 145 |
| PdiI | GCCGGC | 2 cut(s) | 84, 138 |
| PfeI | GAWTC | 1 cut(s) | 389 |
| PinAI | ACCGGT | 1 cut(s) | 262 |
| PkrI | GCNGC | 3 cut(s) | 184, 187, 360 |
| Ple19I | CGATCG | 1 cut(s) | 208 |
| PleI | GAGTC | 1 cut(s) | 158 |
| PpsI | GAGTC | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 3 cut(s) | 87, 141, 385 |
| PspPI | GGNCC | 5 cut(s) | 139, 193, 265, 286, 383 |
| PvuI | CGATCG | 1 cut(s) | 208 |
| SatI | GCNGC | 3 cut(s) | 183, 186, 359 |
| Sau3AI | GATC | 6 cut(s) | 205, 214, 226, 256, 342, 400 |
| Sau96I | GGNCC | 5 cut(s) | 139, 193, 265, 286, 383 |
| SchI | GAGTC | 1 cut(s) | 159 |
| ScrFI | CCNGG | 3 cut(s) | 118, 174, 280 |
| SduI | GDGCHC | 2 cut(s) | 106, 118 |
| SetI | ASST | 3 cut(s) | 33, 57, 354 |
| Sfr274I | CTCGAG | 1 cut(s) | 145 |
| SgrAI | CRCCGGYG | 1 cut(s) | 296 |
| SinI | GGWCC | 1 cut(s) | 265 |
| SlaI | CTCGAG | 1 cut(s) | 145 |
| SmlI | CTYRAG | 2 cut(s) | 145, 269 |
| SmoI | CTYRAG | 2 cut(s) | 145, 269 |
| Sse9I | AATT | 1 cut(s) | 378 |
| SsiI | CCGC | 8 cut(s) | 18, 68, 89, 107, 183, 186, 294, 359 |
| StyD4I | CCNGG | 3 cut(s) | 116, 172, 278 |
| StyI | CCWWGG | 2 cut(s) | 189, 230 |
| TaiI | ACGT | 1 cut(s) | 57 |
| TaqI | TCGA | 4 cut(s) | 146, 220, 259, 338 |
| TasI | AATT | 1 cut(s) | 378 |
| TauI | GCSGC | 3 cut(s) | 185, 188, 361 |
| TfiI | GAWTC | 1 cut(s) | 389 |
| TspDTI | ATGAA | 1 cut(s) | 258 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 1 cut(s) | 265 |
| XceI | RCATGY | 1 cut(s) | 377 |
| XhoI | CTCGAG | 1 cut(s) | 145 |