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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 113 |
| AccB1I | GGYRCC | 2 cut(s) | 398, 419 |
| AccII | CGCG | 2 cut(s) | 276, 286 |
| AciI | CCGC | 3 cut(s) | 59, 241, 284 |
| AcyI | GRCGYC | 2 cut(s) | 399, 420 |
| AfaI | GTAC | 2 cut(s) | 295, 314 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 47, 48, 205, 290 |
| AgeI | ACCGGT | 1 cut(s) | 440 |
| AgsI | TTSAA | 1 cut(s) | 247 |
| AjnI | CCWGG | 1 cut(s) | 78 |
| AluBI | AGCT | 1 cut(s) | 455 |
| AluI | AGCT | 1 cut(s) | 455 |
| Alw26I | GTCTC | 1 cut(s) | 170 |
| AoxI | GGCC | 2 cut(s) | 37, 50 |
| ApaI | GGGCCC | 1 cut(s) | 41 |
| AsiGI | ACCGGT | 1 cut(s) | 440 |
| AspLEI | GCGC | 3 cut(s) | 194, 401, 422 |
| AspS9I | GGNCC | 3 cut(s) | 37, 38, 50 |
| AsuC2I | CCSGG | 1 cut(s) | 6 |
| AsuHPI | GGTGA | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 1 cut(s) | 41 |
| BanI | GGYRCC | 2 cut(s) | 398, 419 |
| BanII | GRGCYC | 1 cut(s) | 41 |
| BauI | CACGAG | 1 cut(s) | 253 |
| BccI | CCATC | 1 cut(s) | 116 |
| BceAI | ACGGC | 2 cut(s) | 249, 386 |
| BciT130I | CCWGG | 1 cut(s) | 80 |
| BcnI | CCSGG | 1 cut(s) | 6 |
| BcoDI | GTCTC | 1 cut(s) | 170 |
| BfaI | CTAG | 1 cut(s) | 371 |
| BfoI | RGCGCY | 3 cut(s) | 195, 402, 423 |
| BisI | GCNGC | 1 cut(s) | 59 |
| BlsI | GCNGC | 1 cut(s) | 60 |
| Bme1390I | CCNGG | 2 cut(s) | 6, 80 |
| BmgT120I | GGNCC | 3 cut(s) | 37, 38, 50 |
| BmiI | GGNNCC | 5 cut(s) | 39, 40, 186, 400, 421 |
| BmrFI | CCNGG | 2 cut(s) | 6, 80 |
| BmsI | GCATC | 1 cut(s) | 228 |
| Bpu10I | CCTNAGC | 1 cut(s) | 102 |
| BpuMI | CCSGG | 1 cut(s) | 6 |
| BsaHI | GRCGYC | 2 cut(s) | 399, 420 |
| BsaWI | WCCGGW | 1 cut(s) | 440 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 47, 48, 205, 290 |
| Bse118I | RCCGGY | 1 cut(s) | 440 |
| BseBI | CCWGG | 1 cut(s) | 80 |
| BseGI | GGATG | 1 cut(s) | 127 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 47, 48, 205, 290 |
| BseSI | GKGCMC | 1 cut(s) | 41 |
| Bsh1236I | CGCG | 2 cut(s) | 276, 286 |
| BshFI | GGCC | 2 cut(s) | 39, 52 |
| BshNI | GGYRCC | 2 cut(s) | 398, 419 |
| BshTI | ACCGGT | 1 cut(s) | 440 |
| BsiSI | CCGG | 3 cut(s) | 6, 173, 441 |
| BslFI | GGGAC | 2 cut(s) | 139, 305 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 47, 48, 205, 290 |
| BsmAI | GTCTC | 1 cut(s) | 170 |
| BsmFI | GGGAC | 2 cut(s) | 139, 305 |
| BsmI | GAATGC | 1 cut(s) | 346 |
| BsnI | GGCC | 2 cut(s) | 39, 52 |
| Bsp120I | GGGCCC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 1 cut(s) | 41 |
| Bsp143I | GATC | 1 cut(s) | 85 |
| Bsp68I | TCGCGA | 1 cut(s) | 276 |
| BspACI | CCGC | 3 cut(s) | 59, 241, 284 |
| BspANI | GGCC | 2 cut(s) | 39, 52 |
| BspFNI | CGCG | 2 cut(s) | 276, 286 |
| BspLI | GGNNCC | 5 cut(s) | 39, 40, 186, 400, 421 |
| BspT107I | GGYRCC | 2 cut(s) | 398, 419 |
| BsrFI | RCCGGY | 1 cut(s) | 440 |
| BssAI | RCCGGY | 1 cut(s) | 440 |
| BssMI | GATC | 1 cut(s) | 85 |
| BssNI | GRCGYC | 2 cut(s) | 399, 420 |
| BssSI | CACGAG | 1 cut(s) | 253 |
| Bst2BI | CACGAG | 1 cut(s) | 253 |
| Bst2UI | CCWGG | 1 cut(s) | 80 |
| BstACI | GRCGYC | 2 cut(s) | 399, 420 |
| BstC8I | GCNNGC | 4 cut(s) | 70, 74, 278, 468 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstF5I | GGATG | 1 cut(s) | 127 |
| BstFNI | CGCG | 2 cut(s) | 276, 286 |
| BstH2I | RGCGCY | 3 cut(s) | 195, 402, 423 |
| BstHHI | GCGC | 3 cut(s) | 194, 401, 422 |
| BstKTI | GATC | 1 cut(s) | 88 |
| BstMAI | GTCTC | 1 cut(s) | 170 |
| BstMBI | GATC | 1 cut(s) | 85 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 58, 215, 419, 428, 484 |
| BstNI | CCWGG | 1 cut(s) | 80 |
| BstNSI | RCATGY | 1 cut(s) | 72 |
| BstSCI | CCNGG | 2 cut(s) | 4, 78 |
| BstSLI | GKGCMC | 1 cut(s) | 41 |
| BstUI | CGCG | 2 cut(s) | 276, 286 |
| BsuRI | GGCC | 2 cut(s) | 39, 52 |
| BtgZI | GCGATG | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 127 |
| BtuMI | TCGCGA | 1 cut(s) | 276 |
| Cac8I | GCNNGC | 4 cut(s) | 70, 74, 278, 468 |
| CfoI | GCGC | 3 cut(s) | 194, 401, 422 |
| Cfr10I | RCCGGY | 1 cut(s) | 440 |
| Cfr13I | GGNCC | 3 cut(s) | 37, 38, 50 |
| CsiI | ACCWGGT | 1 cut(s) | 78 |
| Csp6I | GTAC | 2 cut(s) | 294, 313 |
| CspAI | ACCGGT | 1 cut(s) | 440 |
| CviAII | CATG | 2 cut(s) | 69, 475 |
| CviJI | RGCY | 6 cut(s) | 39, 52, 101, 280, 455, 466 |
| CviKI_1 | RGCY | 6 cut(s) | 39, 52, 101, 280, 455, 466 |
| CviQI | GTAC | 2 cut(s) | 294, 313 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| DinI | GGCGCC | 2 cut(s) | 400, 421 |
| DpnI | GATC | 1 cut(s) | 87 |
| DpnII | GATC | 1 cut(s) | 85 |
| DraI | TTTAAA | 1 cut(s) | 366 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 113 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 113 |
| Eco24I | GRGCYC | 1 cut(s) | 41 |
| EcoO109I | RGGNCCY | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 78 |
| EcoT38I | GRGCYC | 1 cut(s) | 41 |
| EgeI | GGCGCC | 2 cut(s) | 400, 421 |
| EheI | GGCGCC | 2 cut(s) | 400, 421 |
| FaeI | CATG | 2 cut(s) | 72, 478 |
| FaiI | YATR | 3 cut(s) | 70, 140, 476 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 255, 287 |
| FaqI | GGGAC | 2 cut(s) | 139, 305 |
| FatI | CATG | 2 cut(s) | 68, 474 |
| Fnu4HI | GCNGC | 1 cut(s) | 59 |
| FokI | GGATG | 1 cut(s) | 134 |
| FriOI | GRGCYC | 1 cut(s) | 41 |
| Fsp4HI | GCNGC | 1 cut(s) | 59 |
| FspBI | CTAG | 1 cut(s) | 371 |
| GlaI | GCGC | 3 cut(s) | 193, 400, 421 |
| GluI | GCNGC | 1 cut(s) | 59 |
| HaeII | RGCGCY | 3 cut(s) | 195, 402, 423 |
| HaeIII | GGCC | 2 cut(s) | 39, 52 |
| HapII | CCGG | 3 cut(s) | 6, 173, 441 |
| HhaI | GCGC | 3 cut(s) | 194, 401, 422 |
| Hin1I | GRCGYC | 2 cut(s) | 399, 420 |
| Hin1II | CATG | 2 cut(s) | 72, 478 |
| Hin6I | GCGC | 3 cut(s) | 192, 399, 420 |
| HinP1I | GCGC | 3 cut(s) | 192, 399, 420 |
| HinfI | GANTC | 5 cut(s) | 223, 228, 325, 356, 374 |
| HpaII | CCGG | 3 cut(s) | 6, 173, 441 |
| HphI | GGTGA | 1 cut(s) | 455 |
| Hpy188III | TCNNGA | 5 cut(s) | 92, 247, 275, 322, 481 |
| Hpy99I | CGWCG | 1 cut(s) | 407 |
| HpyAV | CCTTC | 4 cut(s) | 63, 127, 281, 487 |
| HpyCH4IV | ACGT | 1 cut(s) | 296 |
| HpyCH4V | TGCA | 1 cut(s) | 76 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 58, 215, 419, 428, 484 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| HpySE526I | ACGT | 1 cut(s) | 296 |
| Hsp92I | GRCGYC | 2 cut(s) | 399, 420 |
| Hsp92II | CATG | 2 cut(s) | 72, 478 |
| HspAI | GCGC | 3 cut(s) | 192, 399, 420 |
| KasI | GGCGCC | 2 cut(s) | 398, 419 |
| Kzo9I | GATC | 1 cut(s) | 85 |
| LmnI | GCTCC | 1 cut(s) | 483 |
| LpnPI | CCDG | 8 cut(s) | 19, 65, 92, 105, 186, 441, 454, 480 |
| LweI | GCATC | 1 cut(s) | 228 |
| MabI | ACCWGGT | 1 cut(s) | 78 |
| MaeI | CTAG | 1 cut(s) | 371 |
| MaeII | ACGT | 1 cut(s) | 296 |
| MalI | GATC | 1 cut(s) | 87 |
| MboI | GATC | 1 cut(s) | 85 |
| MboII | GAAGA | 3 cut(s) | 80, 142, 458 |
| MfeI | CAATTG | 1 cut(s) | 167 |
| MhlI | GDGCHC | 1 cut(s) | 41 |
| MluCI | AATT | 1 cut(s) | 167 |
| Mly113I | GGCGCC | 2 cut(s) | 399, 420 |
| MlyI | GAGTC | 1 cut(s) | 217 |
| MnlI | CCTC | 5 cut(s) | 30, 53, 284, 291, 382 |
| MseI | TTAA | 2 cut(s) | 306, 365 |
| MslI | CAYNNNNRTG | 2 cut(s) | 236, 351 |
| MspI | CCGG | 3 cut(s) | 6, 173, 441 |
| MspR9I | CCNGG | 2 cut(s) | 6, 80 |
| MunI | CAATTG | 1 cut(s) | 167 |
| Mva1269I | GAATGC | 1 cut(s) | 346 |
| MvaI | CCWGG | 1 cut(s) | 80 |
| MvnI | CGCG | 2 cut(s) | 276, 286 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 58, 215, 419, 428, 484 |
| NarI | GGCGCC | 2 cut(s) | 399, 420 |
| NciI | CCSGG | 1 cut(s) | 6 |
| NdeII | GATC | 1 cut(s) | 85 |
| NlaIII | CATG | 2 cut(s) | 72, 478 |
| NlaIV | GGNNCC | 5 cut(s) | 39, 40, 186, 400, 421 |
| NruI | TCGCGA | 1 cut(s) | 276 |
| NspI | RCATGY | 1 cut(s) | 72 |
| PaeI | GCATGC | 1 cut(s) | 72 |
| PctI | GAATGC | 1 cut(s) | 346 |
| PfeI | GAWTC | 4 cut(s) | 228, 325, 356, 374 |
| PinAI | ACCGGT | 1 cut(s) | 440 |
| PkrI | GCNGC | 1 cut(s) | 60 |
| PleI | GAGTC | 1 cut(s) | 217 |
| PluTI | GGCGCC | 2 cut(s) | 402, 423 |
| PpsI | GAGTC | 1 cut(s) | 217 |
| Psp6I | CCWGG | 1 cut(s) | 78 |
| PspGI | CCWGG | 1 cut(s) | 78 |
| PspN4I | GGNNCC | 5 cut(s) | 39, 40, 186, 400, 421 |
| PspOMI | GGGCCC | 1 cut(s) | 37 |
| PspPI | GGNCC | 3 cut(s) | 37, 38, 50 |
| RruI | TCGCGA | 1 cut(s) | 276 |
| RsaI | GTAC | 2 cut(s) | 295, 314 |
| RsaNI | GTAC | 2 cut(s) | 294, 313 |
| RseI | CAYNNNNRTG | 2 cut(s) | 236, 351 |
| SaqAI | TTAA | 2 cut(s) | 306, 365 |
| SatI | GCNGC | 1 cut(s) | 59 |
| Sau3AI | GATC | 1 cut(s) | 85 |
| Sau96I | GGNCC | 3 cut(s) | 37, 38, 50 |
| SchI | GAGTC | 1 cut(s) | 217 |
| ScrFI | CCNGG | 2 cut(s) | 6, 80 |
| SduI | GDGCHC | 1 cut(s) | 41 |
| SetI | ASST | 5 cut(s) | 22, 81, 295, 299, 457 |
| SexAI | ACCWGGT | 1 cut(s) | 78 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SfoI | GGCGCC | 2 cut(s) | 400, 421 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 236, 351 |
| SphI | GCATGC | 1 cut(s) | 72 |
| Sse9I | AATT | 1 cut(s) | 167 |
| SsiI | CCGC | 3 cut(s) | 59, 241, 284 |
| SspDI | GGCGCC | 2 cut(s) | 398, 419 |
| SspMI | CTAG | 1 cut(s) | 371 |
| StyD4I | CCNGG | 2 cut(s) | 4, 78 |
| TaiI | ACGT | 1 cut(s) | 299 |
| TaqI | TCGA | 2 cut(s) | 226, 387 |
| TasI | AATT | 1 cut(s) | 167 |
| TauI | GCSGC | 1 cut(s) | 61 |
| TfiI | GAWTC | 4 cut(s) | 228, 325, 356, 374 |
| Tru1I | TTAA | 2 cut(s) | 306, 365 |
| Tru9I | TTAA | 2 cut(s) | 306, 365 |
| TspGWI | ACGGA | 2 cut(s) | 197, 226 |
| XceI | RCATGY | 1 cut(s) | 72 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 202 |
| XspI | CTAG | 1 cut(s) | 371 |