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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 8 cut(s) | 12, 167, 186, 242, 376, 511, 544, 546 |
| AcsI | RAATTY | 1 cut(s) | 406 |
| AfaI | GTAC | 2 cut(s) | 23, 63 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 142, 207, 347, 421, 422 |
| AgsI | TTSAA | 2 cut(s) | 526, 565 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 117, 149 |
| AluBI | AGCT | 2 cut(s) | 228, 235 |
| AluI | AGCT | 2 cut(s) | 228, 235 |
| Alw21I | GWGCWC | 2 cut(s) | 100, 374 |
| AoxI | GGCC | 3 cut(s) | 174, 337, 349 |
| ApoI | RAATTY | 1 cut(s) | 406 |
| AspA2I | CCTAGG | 1 cut(s) | 140 |
| AspLEI | GCGC | 8 cut(s) | 122, 167, 169, 188, 244, 378, 511, 546 |
| AspS9I | GGNCC | 4 cut(s) | 145, 338, 350, 425 |
| AvaII | GGWCC | 2 cut(s) | 145, 425 |
| AvrII | CCTAGG | 1 cut(s) | 140 |
| BanII | GRGCYC | 1 cut(s) | 552 |
| BauI | CACGAG | 1 cut(s) | 72 |
| Bbv12I | GWGCWC | 2 cut(s) | 100, 374 |
| BccI | CCATC | 1 cut(s) | 415 |
| BfaI | CTAG | 1 cut(s) | 141 |
| BfmI | CTRYAG | 1 cut(s) | 154 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 267 |
| BisI | GCNGC | 3 cut(s) | 10, 262, 359 |
| BlnI | CCTAGG | 1 cut(s) | 140 |
| BlsI | GCNGC | 3 cut(s) | 11, 263, 360 |
| Bme18I | GGWCC | 2 cut(s) | 145, 425 |
| BmgT120I | GGNCC | 4 cut(s) | 145, 338, 350, 425 |
| BmiI | GGNNCC | 5 cut(s) | 134, 146, 147, 340, 426 |
| BmsI | GCATC | 3 cut(s) | 67, 291, 457 |
| BsaJI | CCNNGG | 5 cut(s) | 140, 216, 265, 323, 431 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 337, 367 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 142, 207, 347, 421, 422 |
| Bse118I | RCCGGY | 2 cut(s) | 347, 568 |
| Bse3DI | GCAATG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 5 cut(s) | 140, 216, 265, 323, 431 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 142, 207, 347, 421, 422 |
| BseMI | GCAATG | 1 cut(s) | 450 |
| BsePI | GCGCGC | 1 cut(s) | 165 |
| Bsh1236I | CGCG | 8 cut(s) | 12, 167, 186, 242, 376, 511, 544, 546 |
| Bsh1285I | CGRYCG | 1 cut(s) | 348 |
| BshFI | GGCC | 3 cut(s) | 176, 339, 351 |
| BsiEI | CGRYCG | 1 cut(s) | 348 |
| BsiHKAI | GWGCWC | 2 cut(s) | 100, 374 |
| BsiSI | CCGG | 2 cut(s) | 348, 569 |
| BslFI | GGGAC | 2 cut(s) | 158, 542 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 142, 207, 347, 421, 422 |
| BsmFI | GGGAC | 2 cut(s) | 158, 542 |
| BsnI | GGCC | 3 cut(s) | 176, 339, 351 |
| Bsp1286I | GDGCHC | 3 cut(s) | 100, 374, 552 |
| Bsp143I | GATC | 1 cut(s) | 384 |
| BspANI | GGCC | 3 cut(s) | 176, 339, 351 |
| BspFNI | CGCG | 8 cut(s) | 12, 167, 186, 242, 376, 511, 544, 546 |
| BspLI | GGNNCC | 5 cut(s) | 134, 146, 147, 340, 426 |
| BsrDI | GCAATG | 1 cut(s) | 450 |
| BsrFI | RCCGGY | 2 cut(s) | 347, 568 |
| BssAI | RCCGGY | 2 cut(s) | 347, 568 |
| BssECI | CCNNGG | 5 cut(s) | 140, 216, 265, 323, 431 |
| BssHII | GCGCGC | 1 cut(s) | 165 |
| BssMI | GATC | 1 cut(s) | 384 |
| BssSI | CACGAG | 1 cut(s) | 72 |
| BssT1I | CCWWGG | 2 cut(s) | 140, 265 |
| Bst2BI | CACGAG | 1 cut(s) | 72 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 77 |
| BstDEI | CTNAG | 2 cut(s) | 92, 224 |
| BstFNI | CGCG | 8 cut(s) | 12, 167, 186, 242, 376, 511, 544, 546 |
| BstHHI | GCGC | 8 cut(s) | 122, 167, 169, 188, 244, 378, 511, 546 |
| BstKTI | GATC | 1 cut(s) | 387 |
| BstMBI | GATC | 1 cut(s) | 384 |
| BstMCI | CGRYCG | 1 cut(s) | 348 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 77, 173, 241, 267 |
| BstSFI | CTRYAG | 1 cut(s) | 154 |
| BstUI | CGCG | 8 cut(s) | 12, 167, 186, 242, 376, 511, 544, 546 |
| BsuRI | GGCC | 3 cut(s) | 176, 339, 351 |
| CfoI | GCGC | 8 cut(s) | 122, 167, 169, 188, 244, 378, 511, 546 |
| Cfr10I | RCCGGY | 2 cut(s) | 347, 568 |
| Cfr13I | GGNCC | 4 cut(s) | 145, 338, 350, 425 |
| Csp6I | GTAC | 2 cut(s) | 22, 62 |
| CviAII | CATG | 1 cut(s) | 554 |
| CviQI | GTAC | 2 cut(s) | 22, 62 |
| DdeI | CTNAG | 2 cut(s) | 92, 224 |
| DpnI | GATC | 1 cut(s) | 386 |
| DpnII | GATC | 1 cut(s) | 384 |
| EciI | GGCGGA | 3 cut(s) | 345, 415, 417 |
| Eco130I | CCWWGG | 2 cut(s) | 140, 265 |
| Eco24I | GRGCYC | 1 cut(s) | 552 |
| Eco32I | GATATC | 1 cut(s) | 458 |
| Eco47I | GGWCC | 2 cut(s) | 145, 425 |
| EcoO109I | RGGNCCY | 1 cut(s) | 145 |
| EcoRV | GATATC | 1 cut(s) | 458 |
| EcoT14I | CCWWGG | 2 cut(s) | 140, 265 |
| EcoT38I | GRGCYC | 1 cut(s) | 552 |
| ErhI | CCWWGG | 2 cut(s) | 140, 265 |
| FaeI | CATG | 1 cut(s) | 557 |
| FaiI | YATR | 8 cut(s) | 26, 56, 156, 231, 299, 465, 476, 555 |
| FaqI | GGGAC | 2 cut(s) | 158, 542 |
| FatI | CATG | 1 cut(s) | 553 |
| FauI | CCCGC | 3 cut(s) | 76, 121, 497 |
| Fnu4HI | GCNGC | 3 cut(s) | 10, 262, 359 |
| FriOI | GRGCYC | 1 cut(s) | 552 |
| Fsp4HI | GCNGC | 3 cut(s) | 10, 262, 359 |
| FspBI | CTAG | 1 cut(s) | 141 |
| GlaI | GCGC | 8 cut(s) | 121, 166, 168, 187, 243, 377, 510, 545 |
| GluI | GCNGC | 3 cut(s) | 10, 262, 359 |
| HaeIII | GGCC | 3 cut(s) | 176, 339, 351 |
| HapII | CCGG | 2 cut(s) | 348, 569 |
| HhaI | GCGC | 8 cut(s) | 122, 167, 169, 188, 244, 378, 511, 546 |
| Hin1II | CATG | 1 cut(s) | 557 |
| Hin6I | GCGC | 8 cut(s) | 120, 165, 167, 186, 242, 376, 509, 544 |
| HinP1I | GCGC | 8 cut(s) | 120, 165, 167, 186, 242, 376, 509, 544 |
| HinfI | GANTC | 3 cut(s) | 109, 333, 436 |
| HpaII | CCGG | 2 cut(s) | 348, 569 |
| Hpy188I | TCNGA | 3 cut(s) | 202, 278, 537 |
| Hpy188III | TCNNGA | 1 cut(s) | 42 |
| Hpy99I | CGWCG | 1 cut(s) | 421 |
| HpyAV | CCTTC | 1 cut(s) | 146 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 77, 173, 241, 267 |
| HpyF3I | CTNAG | 2 cut(s) | 92, 224 |
| Hsp92II | CATG | 1 cut(s) | 557 |
| HspAI | GCGC | 8 cut(s) | 120, 165, 167, 186, 242, 376, 509, 544 |
| KflI | GGGWCCC | 1 cut(s) | 145 |
| KroI | GCCGGC | 1 cut(s) | 568 |
| KroNI | GCCGGC | 1 cut(s) | 570 |
| Kzo9I | GATC | 1 cut(s) | 384 |
| LmnI | GCTCC | 1 cut(s) | 417 |
| LpnPI | CCDG | 4 cut(s) | 130, 361, 364, 542 |
| LweI | GCATC | 3 cut(s) | 67, 291, 457 |
| MaeI | CTAG | 1 cut(s) | 141 |
| MalI | GATC | 1 cut(s) | 386 |
| MboI | GATC | 1 cut(s) | 384 |
| MboII | GAAGA | 3 cut(s) | 118, 379, 512 |
| MhlI | GDGCHC | 3 cut(s) | 100, 374, 552 |
| MluCI | AATT | 1 cut(s) | 406 |
| MroNI | GCCGGC | 1 cut(s) | 568 |
| MseI | TTAA | 1 cut(s) | 272 |
| MspI | CCGG | 2 cut(s) | 348, 569 |
| MvnI | CGCG | 8 cut(s) | 12, 167, 186, 242, 376, 511, 544, 546 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 77, 173, 241, 267 |
| NaeI | GCCGGC | 1 cut(s) | 570 |
| NdeII | GATC | 1 cut(s) | 384 |
| NgoMIV | GCCGGC | 1 cut(s) | 568 |
| NlaIII | CATG | 1 cut(s) | 557 |
| NlaIV | GGNNCC | 5 cut(s) | 134, 146, 147, 340, 426 |
| NmeAIII | GCCGAG | 3 cut(s) | 241, 304, 456 |
| PauI | GCGCGC | 1 cut(s) | 165 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 380 |
| PdiI | GCCGGC | 1 cut(s) | 570 |
| PfeI | GAWTC | 3 cut(s) | 109, 333, 436 |
| PkrI | GCNGC | 3 cut(s) | 11, 263, 360 |
| PpuMI | RGGWCCY | 1 cut(s) | 145 |
| Psp5II | RGGWCCY | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 5 cut(s) | 134, 146, 147, 340, 426 |
| PspPI | GGNCC | 4 cut(s) | 145, 338, 350, 425 |
| PspPPI | RGGWCCY | 1 cut(s) | 145 |
| PteI | GCGCGC | 1 cut(s) | 165 |
| RsaI | GTAC | 2 cut(s) | 23, 63 |
| RsaNI | GTAC | 2 cut(s) | 22, 62 |
| SaqAI | TTAA | 1 cut(s) | 272 |
| SatI | GCNGC | 3 cut(s) | 10, 262, 359 |
| Sau3AI | GATC | 1 cut(s) | 384 |
| Sau96I | GGNCC | 4 cut(s) | 145, 338, 350, 425 |
| SduI | GDGCHC | 3 cut(s) | 100, 374, 552 |
| SetI | ASST | 6 cut(s) | 23, 37, 67, 194, 230, 237 |
| SfaNI | GCATC | 3 cut(s) | 67, 291, 457 |
| SfcI | CTRYAG | 1 cut(s) | 154 |
| SinI | GGWCC | 2 cut(s) | 145, 425 |
| Sse9I | AATT | 1 cut(s) | 406 |
| SspMI | CTAG | 1 cut(s) | 141 |
| StyI | CCWWGG | 2 cut(s) | 140, 265 |
| TaqI | TCGA | 5 cut(s) | 43, 344, 383, 419, 439 |
| TasI | AATT | 1 cut(s) | 406 |
| TauI | GCSGC | 3 cut(s) | 12, 264, 361 |
| TfiI | GAWTC | 3 cut(s) | 109, 333, 436 |
| Tru1I | TTAA | 1 cut(s) | 272 |
| Tru9I | TTAA | 1 cut(s) | 272 |
| VpaK11BI | GGWCC | 2 cut(s) | 145, 425 |
| XapI | RAATTY | 1 cut(s) | 406 |
| XmaJI | CCTAGG | 1 cut(s) | 140 |
| XspI | CTAG | 1 cut(s) | 141 |