Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 633 |
| Acc16I | TGCGCA | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccII | CGCG | 5 cut(s) | 342, 349, 421, 649, 776 |
| AciI | CCGC | 7 cut(s) | 57, 323, 419, 440, 471, 647, 741 |
| AclWI | GGATC | 2 cut(s) | 366, 518 |
| AcoI | YGGCCR | 3 cut(s) | 499, 574, 619 |
| AcsI | RAATTY | 1 cut(s) | 298 |
| AcuI | CTGAAG | 1 cut(s) | 708 |
| AfaI | GTAC | 4 cut(s) | 281, 570, 644, 710 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 425 |
| AflIII | ACRYGT | 1 cut(s) | 792 |
| AjiI | CACGTC | 1 cut(s) | 190 |
| AjnI | CCWGG | 3 cut(s) | 180, 247, 702 |
| AluBI | AGCT | 4 cut(s) | 264, 328, 353, 627 |
| AluI | AGCT | 4 cut(s) | 264, 328, 353, 627 |
| Alw21I | GWGCWC | 1 cut(s) | 195 |
| AlwI | GGATC | 2 cut(s) | 366, 518 |
| AoxI | GGCC | 5 cut(s) | 157, 205, 499, 574, 619 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 1 cut(s) | 320 |
| ApoI | RAATTY | 1 cut(s) | 298 |
| AspLEI | GCGC | 2 cut(s) | 274, 349 |
| AspS9I | GGNCC | 4 cut(s) | 157, 158, 232, 758 |
| AsuHPI | GGTGA | 1 cut(s) | 429 |
| AvaII | GGWCC | 2 cut(s) | 232, 758 |
| AxyI | CCTNAGG | 1 cut(s) | 530 |
| BaeGI | GKGCMC | 2 cut(s) | 88, 161 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 2 cut(s) | 161, 564 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| Bbv12I | GWGCWC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 332 |
| BccI | CCATC | 5 cut(s) | 113, 185, 221, 320, 645 |
| BceAI | ACGGC | 3 cut(s) | 220, 606, 795 |
| BciT130I | CCWGG | 3 cut(s) | 182, 249, 704 |
| BclI | TGATCA | 1 cut(s) | 21 |
| BfaI | CTAG | 3 cut(s) | 261, 354, 521 |
| BisI | GCNGC | 2 cut(s) | 57, 321 |
| BlsI | GCNGC | 2 cut(s) | 58, 322 |
| BmcAI | AGTACT | 1 cut(s) | 710 |
| Bme1390I | CCNGG | 3 cut(s) | 182, 249, 704 |
| Bme18I | GGWCC | 2 cut(s) | 232, 758 |
| BmgBI | CACGTC | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 4 cut(s) | 157, 158, 232, 758 |
| BmiI | GGNNCC | 4 cut(s) | 6, 73, 85, 159 |
| BmrFI | CCNGG | 3 cut(s) | 182, 249, 704 |
| BmrI | ACTGGG | 2 cut(s) | 164, 549 |
| BmsI | GCATC | 2 cut(s) | 283, 364 |
| BmuI | ACTGGG | 2 cut(s) | 164, 549 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| BpmI | CTGGAG | 2 cut(s) | 270, 725 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaAI | YACGTR | 1 cut(s) | 568 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 761 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 425 |
| Bse118I | RCCGGY | 1 cut(s) | 617 |
| Bse1I | ACTGG | 4 cut(s) | 159, 544, 716, 760 |
| Bse21I | CCTNAGG | 1 cut(s) | 530 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseBI | CCWGG | 3 cut(s) | 182, 249, 704 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 1 cut(s) | 761 |
| BseGI | GGATG | 5 cut(s) | 96, 177, 213, 379, 525 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 425 |
| BseMII | CTCAG | 4 cut(s) | 142, 250, 404, 544 |
| BseNI | ACTGG | 4 cut(s) | 159, 544, 716, 760 |
| BseSI | GKGCMC | 2 cut(s) | 88, 161 |
| BseX3I | CGGCCG | 1 cut(s) | 619 |
| BseXI | GCAGC | 1 cut(s) | 332 |
| BseYI | CCCAGC | 2 cut(s) | 264, 369 |
| BsgI | GTGCAG | 1 cut(s) | 718 |
| Bsh1236I | CGCG | 5 cut(s) | 342, 349, 421, 649, 776 |
| Bsh1285I | CGRYCG | 1 cut(s) | 622 |
| BshFI | GGCC | 5 cut(s) | 159, 207, 501, 576, 621 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 1 cut(s) | 622 |
| BsiHKAI | GWGCWC | 1 cut(s) | 195 |
| BsiSI | CCGG | 3 cut(s) | 150, 230, 618 |
| BslFI | GGGAC | 1 cut(s) | 643 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 425 |
| BsmFI | GGGAC | 1 cut(s) | 643 |
| BsnI | GGCC | 5 cut(s) | 159, 207, 501, 576, 621 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 161, 195, 564 |
| Bsp1407I | TGTACA | 1 cut(s) | 279 |
| Bsp143I | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| Bsp68I | TCGCGA | 2 cut(s) | 342, 776 |
| BspACI | CCGC | 7 cut(s) | 57, 323, 419, 440, 471, 647, 741 |
| BspANI | GGCC | 5 cut(s) | 159, 207, 501, 576, 621 |
| BspCNI | CTCAG | 4 cut(s) | 141, 249, 403, 543 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 5 cut(s) | 342, 349, 421, 649, 776 |
| BspLI | GGNNCC | 4 cut(s) | 6, 73, 85, 159 |
| BspPI | GGATC | 2 cut(s) | 366, 518 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BsrFI | RCCGGY | 1 cut(s) | 617 |
| BsrGI | TGTACA | 1 cut(s) | 279 |
| BsrI | ACTGG | 4 cut(s) | 159, 544, 716, 760 |
| BssAI | RCCGGY | 1 cut(s) | 617 |
| BssECI | CCNNGG | 1 cut(s) | 761 |
| BssMI | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| BssT1I | CCWWGG | 1 cut(s) | 761 |
| Bst2UI | CCWGG | 3 cut(s) | 182, 249, 704 |
| Bst4CI | ACNGT | 1 cut(s) | 638 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstAUI | TGTACA | 1 cut(s) | 279 |
| BstBAI | YACGTR | 1 cut(s) | 568 |
| BstC8I | GCNNGC | 4 cut(s) | 195, 209, 351, 367 |
| BstDEI | CTNAG | 4 cut(s) | 128, 236, 390, 530 |
| BstEII | GGTNACC | 1 cut(s) | 543 |
| BstF5I | GGATG | 5 cut(s) | 96, 177, 213, 379, 525 |
| BstFNI | CGCG | 5 cut(s) | 342, 349, 421, 649, 776 |
| BstHHI | GCGC | 2 cut(s) | 274, 349 |
| BstKTI | GATC | 5 cut(s) | 24, 31, 361, 403, 513 |
| BstMBI | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| BstMCI | CGRYCG | 1 cut(s) | 622 |
| BstNI | CCWGG | 3 cut(s) | 182, 249, 704 |
| BstNSI | RCATGY | 2 cut(s) | 149, 796 |
| BstPI | GGTNACC | 1 cut(s) | 543 |
| BstSCI | CCNGG | 3 cut(s) | 180, 247, 702 |
| BstSLI | GKGCMC | 2 cut(s) | 88, 161 |
| BstSNI | TACGTA | 1 cut(s) | 568 |
| BstUI | CGCG | 5 cut(s) | 342, 349, 421, 649, 776 |
| BstV1I | GCAGC | 1 cut(s) | 332 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| BstZI | CGGCCG | 1 cut(s) | 619 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| Bsu36I | CCTNAGG | 1 cut(s) | 530 |
| BsuRI | GGCC | 5 cut(s) | 159, 207, 501, 576, 621 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgZI | GCGATG | 1 cut(s) | 664 |
| BtrI | CACGTC | 1 cut(s) | 190 |
| BtsCI | GGATG | 5 cut(s) | 96, 177, 213, 379, 525 |
| BtsIMutI | CAGTG | 1 cut(s) | 753 |
| BtuMI | TCGCGA | 2 cut(s) | 342, 776 |
| Cac8I | GCNNGC | 4 cut(s) | 195, 209, 351, 367 |
| CfoI | GCGC | 2 cut(s) | 274, 349 |
| Cfr10I | RCCGGY | 1 cut(s) | 617 |
| Cfr13I | GGNCC | 4 cut(s) | 157, 158, 232, 758 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| Csp6I | GTAC | 4 cut(s) | 280, 569, 643, 709 |
| CviAII | CATG | 5 cut(s) | 66, 146, 333, 572, 793 |
| CviQI | GTAC | 4 cut(s) | 280, 569, 643, 709 |
| DdeI | CTNAG | 4 cut(s) | 128, 236, 390, 530 |
| DpnI | GATC | 5 cut(s) | 23, 30, 360, 402, 512 |
| DpnII | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| EaeI | YGGCCR | 3 cut(s) | 499, 574, 619 |
| EagI | CGGCCG | 1 cut(s) | 619 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| EciI | GGCGGA | 1 cut(s) | 730 |
| EclXI | CGGCCG | 1 cut(s) | 619 |
| Eco105I | TACGTA | 1 cut(s) | 568 |
| Eco130I | CCWWGG | 1 cut(s) | 761 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 564 |
| Eco47I | GGWCC | 2 cut(s) | 232, 758 |
| Eco52I | CGGCCG | 1 cut(s) | 619 |
| Eco57I | CTGAAG | 1 cut(s) | 708 |
| Eco81I | CCTNAGG | 1 cut(s) | 530 |
| Eco91I | GGTNACC | 1 cut(s) | 543 |
| EcoO109I | RGGNCCY | 1 cut(s) | 158 |
| EcoO65I | GGTNACC | 1 cut(s) | 543 |
| EcoRII | CCWGG | 3 cut(s) | 180, 247, 702 |
| EcoT14I | CCWWGG | 1 cut(s) | 761 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 564 |
| ErhI | CCWWGG | 1 cut(s) | 761 |
| FaeI | CATG | 5 cut(s) | 69, 149, 336, 575, 796 |
| FaiI | YATR | 7 cut(s) | 67, 147, 334, 573, 633, 789, 794 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 27, 59 |
| FaqI | GGGAC | 1 cut(s) | 643 |
| FatI | CATG | 5 cut(s) | 65, 145, 332, 571, 792 |
| FauI | CCCGC | 1 cut(s) | 654 |
| FbaI | TGATCA | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 2 cut(s) | 57, 321 |
| FokI | GGATG | 5 cut(s) | 83, 164, 200, 386, 512 |
| FriOI | GRGCYC | 2 cut(s) | 161, 564 |
| Fsp4HI | GCNGC | 2 cut(s) | 57, 321 |
| FspAI | RTGCGCAY | 1 cut(s) | 273 |
| FspBI | CTAG | 3 cut(s) | 261, 354, 521 |
| FspI | TGCGCA | 1 cut(s) | 273 |
| GlaI | GCGC | 2 cut(s) | 273, 348 |
| GluI | GCNGC | 2 cut(s) | 57, 321 |
| GsaI | CCCAGC | 2 cut(s) | 268, 373 |
| GsuI | CTGGAG | 2 cut(s) | 270, 725 |
| HaeIII | GGCC | 5 cut(s) | 159, 207, 501, 576, 621 |
| HapII | CCGG | 3 cut(s) | 150, 230, 618 |
| HhaI | GCGC | 2 cut(s) | 274, 349 |
| Hin1II | CATG | 5 cut(s) | 69, 149, 336, 575, 796 |
| Hin6I | GCGC | 2 cut(s) | 272, 347 |
| HinP1I | GCGC | 2 cut(s) | 272, 347 |
| HinfI | GANTC | 4 cut(s) | 132, 173, 495, 584 |
| HpaII | CCGG | 3 cut(s) | 150, 230, 618 |
| HphI | GGTGA | 1 cut(s) | 429 |
| Hpy166II | GTNNAC | 2 cut(s) | 437, 798 |
| Hpy188I | TCNGA | 4 cut(s) | 131, 218, 239, 393 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 341, 463, 532, 775, 804 |
| Hpy8I | GTNNAC | 2 cut(s) | 437, 798 |
| Hpy99I | CGWCG | 4 cut(s) | 191, 222, 560, 781 |
| HpyAV | CCTTC | 3 cut(s) | 171, 683, 709 |
| HpyCH4III | ACNGT | 1 cut(s) | 638 |
| HpyCH4IV | ACGT | 2 cut(s) | 189, 567 |
| HpyCH4V | TGCA | 3 cut(s) | 377, 720, 735 |
| HpyF3I | CTNAG | 4 cut(s) | 128, 236, 390, 530 |
| HpySE526I | ACGT | 2 cut(s) | 189, 567 |
| Hsp92II | CATG | 5 cut(s) | 69, 149, 336, 575, 796 |
| HspAI | GCGC | 2 cut(s) | 272, 347 |
| Ksp22I | TGATCA | 1 cut(s) | 21 |
| Kzo9I | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| LmnI | GCTCC | 2 cut(s) | 10, 325 |
| Lsp1109I | GCAGC | 1 cut(s) | 332 |
| LweI | GCATC | 2 cut(s) | 283, 364 |
| MaeI | CTAG | 3 cut(s) | 261, 354, 521 |
| MaeII | ACGT | 2 cut(s) | 189, 567 |
| MaeIII | GTNAC | 2 cut(s) | 543, 589 |
| MalI | GATC | 5 cut(s) | 23, 30, 360, 402, 512 |
| MboI | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| MboII | GAAGA | 4 cut(s) | 28, 47, 252, 407 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 4 cut(s) | 88, 161, 195, 564 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 3 cut(s) | 298, 578, 693 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| MlyI | GAGTC | 2 cut(s) | 126, 578 |
| MmeI | TCCRAC | 1 cut(s) | 241 |
| MnlI | CCTC | 7 cut(s) | 31, 129, 209, 245, 501, 539, 748 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 1 cut(s) | 45 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspA1I | CMGCKG | 2 cut(s) | 323, 442 |
| MspI | CCGG | 3 cut(s) | 150, 230, 618 |
| MspR9I | CCNGG | 3 cut(s) | 182, 249, 704 |
| MvaI | CCWGG | 3 cut(s) | 182, 249, 704 |
| MvnI | CGCG | 5 cut(s) | 342, 349, 421, 649, 776 |
| NdeII | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| NlaIII | CATG | 5 cut(s) | 69, 149, 336, 575, 796 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 73, 85, 159 |
| NmuCI | GTSAC | 1 cut(s) | 589 |
| NruI | TCGCGA | 2 cut(s) | 342, 776 |
| NsbI | TGCGCA | 1 cut(s) | 273 |
| NspI | RCATGY | 2 cut(s) | 149, 796 |
| PciI | ACATGT | 1 cut(s) | 792 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 346, 564 |
| PfeI | GAWTC | 2 cut(s) | 173, 495 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PfoI | TCCNGGA | 2 cut(s) | 180, 702 |
| PkrI | GCNGC | 2 cut(s) | 58, 322 |
| PleI | GAGTC | 2 cut(s) | 126, 578 |
| PpsI | GAGTC | 2 cut(s) | 126, 578 |
| Ppu21I | YACGTR | 1 cut(s) | 568 |
| PscI | ACATGT | 1 cut(s) | 792 |
| PsiI | TTATAA | 1 cut(s) | 633 |
| Psp6I | CCWGG | 3 cut(s) | 180, 247, 702 |
| PspEI | GGTNACC | 1 cut(s) | 543 |
| PspFI | CCCAGC | 2 cut(s) | 264, 369 |
| PspGI | CCWGG | 3 cut(s) | 180, 247, 702 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 73, 85, 159 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 4 cut(s) | 157, 158, 232, 758 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| RruI | TCGCGA | 2 cut(s) | 342, 776 |
| RsaI | GTAC | 4 cut(s) | 281, 570, 644, 710 |
| RsaNI | GTAC | 4 cut(s) | 280, 569, 643, 709 |
| SaqAI | TTAA | 1 cut(s) | 45 |
| SatI | GCNGC | 2 cut(s) | 57, 321 |
| Sau3AI | GATC | 5 cut(s) | 21, 28, 358, 400, 510 |
| Sau96I | GGNCC | 4 cut(s) | 157, 158, 232, 758 |
| ScaI | AGTACT | 1 cut(s) | 710 |
| SchI | GAGTC | 2 cut(s) | 126, 578 |
| ScrFI | CCNGG | 3 cut(s) | 182, 249, 704 |
| SduI | GDGCHC | 4 cut(s) | 88, 161, 195, 564 |
| SfaNI | GCATC | 2 cut(s) | 283, 364 |
| SinI | GGWCC | 2 cut(s) | 232, 758 |
| SnaBI | TACGTA | 1 cut(s) | 568 |
| Sse9I | AATT | 3 cut(s) | 298, 578, 693 |
| SsiI | CCGC | 7 cut(s) | 57, 323, 419, 440, 471, 647, 741 |
| SspMI | CTAG | 3 cut(s) | 261, 354, 521 |
| StyD4I | CCNGG | 3 cut(s) | 180, 247, 702 |
| StyI | CCWWGG | 1 cut(s) | 761 |
| TaaI | ACNGT | 1 cut(s) | 638 |
| TaiI | ACGT | 2 cut(s) | 192, 570 |
| TaqI | TCGA | 2 cut(s) | 27, 493 |
| TasI | AATT | 3 cut(s) | 298, 578, 693 |
| TatI | WGTACW | 2 cut(s) | 279, 708 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TfiI | GAWTC | 2 cut(s) | 173, 495 |
| Tru1I | TTAA | 1 cut(s) | 45 |
| Tru9I | TTAA | 1 cut(s) | 45 |
| TscAI | CASTG | 1 cut(s) | 760 |
| TseFI | GTSAC | 1 cut(s) | 589 |
| TseI | GCWGC | 1 cut(s) | 320 |
| Tsp45I | GTSAC | 1 cut(s) | 589 |
| TspDTI | ATGAA | 3 cut(s) | 85, 321, 715 |
| TspRI | CASTG | 1 cut(s) | 760 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| VpaK11BI | GGWCC | 2 cut(s) | 232, 758 |
| XapI | RAATTY | 1 cut(s) | 298 |
| XceI | RCATGY | 2 cut(s) | 149, 796 |
| XspI | CTAG | 3 cut(s) | 261, 354, 521 |
| ZrmI | AGTACT | 1 cut(s) | 710 |