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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 224 |
| AccII | CGCG | 3 cut(s) | 84, 294, 374 |
| AciI | CCGC | 4 cut(s) | 82, 139, 161, 345 |
| AclWI | GGATC | 2 cut(s) | 34, 47 |
| AcoI | YGGCCR | 1 cut(s) | 124 |
| AcsI | RAATTY | 1 cut(s) | 60 |
| AcyI | GRCGYC | 1 cut(s) | 435 |
| AfaI | GTAC | 2 cut(s) | 152, 191 |
| AgsI | TTSAA | 2 cut(s) | 59, 254 |
| AjnI | CCWGG | 2 cut(s) | 268, 437 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 246, 278 |
| AluBI | AGCT | 1 cut(s) | 367 |
| AluI | AGCT | 1 cut(s) | 367 |
| AlwI | GGATC | 2 cut(s) | 34, 47 |
| Ama87I | CYCGRG | 1 cut(s) | 398 |
| AoxI | GGCC | 2 cut(s) | 28, 124 |
| ApoI | RAATTY | 1 cut(s) | 60 |
| AspLEI | GCGC | 2 cut(s) | 296, 376 |
| AspS9I | GGNCC | 1 cut(s) | 29 |
| AsuII | TTCGAA | 1 cut(s) | 12 |
| AvaI | CYCGRG | 1 cut(s) | 398 |
| BalI | TGGCCA | 1 cut(s) | 126 |
| BamHI | GGATCC | 1 cut(s) | 39 |
| BccI | CCATC | 1 cut(s) | 326 |
| BciT130I | CCWGG | 2 cut(s) | 270, 439 |
| BfaI | CTAG | 1 cut(s) | 457 |
| BisI | GCNGC | 3 cut(s) | 82, 139, 345 |
| BlsI | GCNGC | 3 cut(s) | 83, 140, 346 |
| Bme1390I | CCNGG | 2 cut(s) | 270, 439 |
| BmeT110I | CYCGRG | 1 cut(s) | 398 |
| BmgT120I | GGNCC | 1 cut(s) | 29 |
| BmiI | GGNNCC | 3 cut(s) | 31, 41, 263 |
| BmrFI | CCNGG | 2 cut(s) | 270, 439 |
| BmsI | GCATC | 2 cut(s) | 13, 103 |
| Bpu14I | TTCGAA | 1 cut(s) | 12 |
| BsaHI | GRCGYC | 1 cut(s) | 435 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 305, 335, 437 |
| BseBI | CCWGG | 2 cut(s) | 270, 439 |
| BseGI | GGATG | 2 cut(s) | 4, 155 |
| BseMII | CTCAG | 3 cut(s) | 39, 342, 370 |
| Bsh1236I | CGCG | 3 cut(s) | 84, 294, 374 |
| BshFI | GGCC | 2 cut(s) | 30, 126 |
| BsiHKCI | CYCGRG | 1 cut(s) | 398 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsnI | GGCC | 2 cut(s) | 30, 126 |
| BsoBI | CYCGRG | 1 cut(s) | 398 |
| Bsp119I | TTCGAA | 1 cut(s) | 12 |
| Bsp143I | GATC | 1 cut(s) | 39 |
| BspACI | CCGC | 4 cut(s) | 82, 139, 161, 345 |
| BspANI | GGCC | 2 cut(s) | 30, 126 |
| BspCNI | CTCAG | 3 cut(s) | 38, 341, 369 |
| BspFNI | CGCG | 3 cut(s) | 84, 294, 374 |
| BspLI | GGNNCC | 3 cut(s) | 31, 41, 263 |
| BspPI | GGATC | 2 cut(s) | 34, 47 |
| BspQI | GCTCTTC | 1 cut(s) | 123 |
| BspT104I | TTCGAA | 1 cut(s) | 12 |
| BssMI | GATC | 1 cut(s) | 39 |
| BssNI | GRCGYC | 1 cut(s) | 435 |
| Bst2UI | CCWGG | 2 cut(s) | 270, 439 |
| Bst4CI | ACNGT | 1 cut(s) | 287 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstACI | GRCGYC | 1 cut(s) | 435 |
| BstBI | TTCGAA | 1 cut(s) | 12 |
| BstC8I | GCNNGC | 3 cut(s) | 298, 342, 391 |
| BstDEI | CTNAG | 4 cut(s) | 25, 220, 328, 356 |
| BstF5I | GGATG | 2 cut(s) | 4, 155 |
| BstFNI | CGCG | 3 cut(s) | 84, 294, 374 |
| BstHHI | GCGC | 2 cut(s) | 296, 376 |
| BstKTI | GATC | 1 cut(s) | 42 |
| BstMBI | GATC | 1 cut(s) | 39 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 302, 373 |
| BstNI | CCWGG | 2 cut(s) | 270, 439 |
| BstSCI | CCNGG | 2 cut(s) | 268, 437 |
| BstUI | CGCG | 3 cut(s) | 84, 294, 374 |
| BstX2I | RGATCY | 1 cut(s) | 39 |
| BstYI | RGATCY | 1 cut(s) | 39 |
| BsuRI | GGCC | 2 cut(s) | 30, 126 |
| BtsCI | GGATG | 2 cut(s) | 4, 155 |
| Cac8I | GCNNGC | 3 cut(s) | 298, 342, 391 |
| CfoI | GCGC | 2 cut(s) | 296, 376 |
| Cfr13I | GGNCC | 1 cut(s) | 29 |
| CseI | GACGC | 1 cut(s) | 443 |
| Csp6I | GTAC | 2 cut(s) | 151, 190 |
| CviAII | CATG | 1 cut(s) | 200 |
| CviJI | RGCY | 7 cut(s) | 30, 126, 133, 305, 340, 367, 403 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 126, 133, 305, 340, 367, 403 |
| CviQI | GTAC | 2 cut(s) | 151, 190 |
| DdeI | CTNAG | 4 cut(s) | 25, 220, 328, 356 |
| DpnI | GATC | 1 cut(s) | 41 |
| DpnII | GATC | 1 cut(s) | 39 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 224 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 224 |
| EaeI | YGGCCR | 1 cut(s) | 124 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco88I | CYCGRG | 1 cut(s) | 398 |
| EcoO109I | RGGNCCY | 1 cut(s) | 29 |
| EcoRII | CCWGG | 2 cut(s) | 268, 437 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 1 cut(s) | 203 |
| FaiI | YATR | 4 cut(s) | 184, 201, 258, 363 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| FatI | CATG | 1 cut(s) | 199 |
| FauI | CCCGC | 1 cut(s) | 168 |
| Fnu4HI | GCNGC | 3 cut(s) | 82, 139, 345 |
| FokI | GGATG | 1 cut(s) | 142 |
| Fsp4HI | GCNGC | 3 cut(s) | 82, 139, 345 |
| FspBI | CTAG | 1 cut(s) | 457 |
| GlaI | GCGC | 2 cut(s) | 295, 375 |
| GluI | GCNGC | 3 cut(s) | 82, 139, 345 |
| HaeIII | GGCC | 2 cut(s) | 30, 126 |
| HgaI | GACGC | 1 cut(s) | 443 |
| HhaI | GCGC | 2 cut(s) | 296, 376 |
| Hin1I | GRCGYC | 1 cut(s) | 435 |
| Hin1II | CATG | 1 cut(s) | 203 |
| Hin6I | GCGC | 2 cut(s) | 294, 374 |
| HinP1I | GCGC | 2 cut(s) | 294, 374 |
| HinfI | GANTC | 3 cut(s) | 55, 237, 406 |
| Hpy166II | GTNNAC | 1 cut(s) | 153 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 331 |
| Hpy188III | TCNNGA | 1 cut(s) | 52 |
| Hpy8I | GTNNAC | 1 cut(s) | 153 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 1 cut(s) | 275 |
| HpyCH4III | ACNGT | 1 cut(s) | 287 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 302, 373 |
| HpyF3I | CTNAG | 4 cut(s) | 25, 220, 328, 356 |
| Hsp92I | GRCGYC | 1 cut(s) | 435 |
| Hsp92II | CATG | 1 cut(s) | 203 |
| HspAI | GCGC | 2 cut(s) | 294, 374 |
| Kzo9I | GATC | 1 cut(s) | 39 |
| LguI | GCTCTTC | 1 cut(s) | 123 |
| LpnPI | CCDG | 7 cut(s) | 12, 37, 255, 282, 337, 424, 451 |
| LweI | GCATC | 2 cut(s) | 13, 103 |
| MaeI | CTAG | 1 cut(s) | 457 |
| MalI | GATC | 1 cut(s) | 41 |
| MboI | GATC | 1 cut(s) | 39 |
| MboII | GAAGA | 1 cut(s) | 110 |
| MflI | RGATCY | 1 cut(s) | 39 |
| MlsI | TGGCCA | 1 cut(s) | 126 |
| MluCI | AATT | 2 cut(s) | 60, 280 |
| MluNI | TGGCCA | 1 cut(s) | 126 |
| MlyI | GAGTC | 1 cut(s) | 246 |
| MnlI | CCTC | 3 cut(s) | 108, 203, 224 |
| Mox20I | TGGCCA | 1 cut(s) | 126 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 126 |
| MseI | TTAA | 1 cut(s) | 279 |
| Msp20I | TGGCCA | 1 cut(s) | 126 |
| MspR9I | CCNGG | 2 cut(s) | 270, 439 |
| MvaI | CCWGG | 2 cut(s) | 270, 439 |
| MvnI | CGCG | 3 cut(s) | 84, 294, 374 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 302, 373 |
| NdeII | GATC | 1 cut(s) | 39 |
| NlaIII | CATG | 1 cut(s) | 203 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 41, 263 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspV | TTCGAA | 1 cut(s) | 12 |
| PciSI | GCTCTTC | 1 cut(s) | 123 |
| PfeI | GAWTC | 2 cut(s) | 55, 406 |
| PfoI | TCCNGGA | 1 cut(s) | 268 |
| PkrI | GCNGC | 3 cut(s) | 83, 140, 346 |
| PleI | GAGTC | 1 cut(s) | 245 |
| PpsI | GAGTC | 1 cut(s) | 245 |
| Psp6I | CCWGG | 2 cut(s) | 268, 437 |
| PspGI | CCWGG | 2 cut(s) | 268, 437 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 41, 263 |
| PspPI | GGNCC | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 39 |
| RsaI | GTAC | 2 cut(s) | 152, 191 |
| RsaNI | GTAC | 2 cut(s) | 151, 190 |
| SapI | GCTCTTC | 1 cut(s) | 123 |
| SaqAI | TTAA | 1 cut(s) | 279 |
| SatI | GCNGC | 3 cut(s) | 82, 139, 345 |
| Sau3AI | GATC | 1 cut(s) | 39 |
| Sau96I | GGNCC | 1 cut(s) | 29 |
| SchI | GAGTC | 1 cut(s) | 246 |
| ScrFI | CCNGG | 2 cut(s) | 270, 439 |
| SetI | ASST | 7 cut(s) | 100, 152, 195, 216, 263, 369, 455 |
| SfaNI | GCATC | 2 cut(s) | 13, 103 |
| SfuI | TTCGAA | 1 cut(s) | 12 |
| Sse9I | AATT | 2 cut(s) | 60, 280 |
| SsiI | CCGC | 4 cut(s) | 82, 139, 161, 345 |
| SspMI | CTAG | 1 cut(s) | 457 |
| StyD4I | CCNGG | 2 cut(s) | 268, 437 |
| TaaI | ACNGT | 1 cut(s) | 287 |
| TaqI | TCGA | 2 cut(s) | 12, 216 |
| TasI | AATT | 2 cut(s) | 60, 280 |
| TauI | GCSGC | 3 cut(s) | 84, 141, 347 |
| TfiI | GAWTC | 2 cut(s) | 55, 406 |
| Tru1I | TTAA | 1 cut(s) | 279 |
| Tru9I | TTAA | 1 cut(s) | 279 |
| TspDTI | ATGAA | 1 cut(s) | 216 |
| XapI | RAATTY | 1 cut(s) | 60 |
| XspI | CTAG | 1 cut(s) | 457 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |