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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 765 |
| Acc36I | ACCTGC | 1 cut(s) | 232 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 356 |
| AccII | CGCG | 4 cut(s) | 398, 672, 758, 1014 |
| AclWI | GGATC | 3 cut(s) | 122, 226, 875 |
| AcsI | RAATTY | 1 cut(s) | 695 |
| AcuI | CTGAAG | 1 cut(s) | 285 |
| AdeI | CACNNNGTG | 1 cut(s) | 302 |
| AfaI | GTAC | 1 cut(s) | 546 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 241, 356, 463, 793 |
| AgsI | TTSAA | 4 cut(s) | 41, 371, 476, 908 |
| AjnI | CCWGG | 6 cut(s) | 327, 355, 625, 780, 932, 999 |
| AluBI | AGCT | 5 cut(s) | 198, 258, 539, 581, 1010 |
| AluI | AGCT | 5 cut(s) | 198, 258, 539, 581, 1010 |
| Alw26I | GTCTC | 1 cut(s) | 852 |
| AlwI | GGATC | 3 cut(s) | 122, 226, 875 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 201, 1000 |
| AoxI | GGCC | 9 cut(s) | 93, 188, 225, 783, 796, 930, 975, 1029, 1096 |
| ApeKI | GCWGC | 9 cut(s) | 198, 201, 409, 485, 488, 491, 622, 752, 1043 |
| ApoI | RAATTY | 1 cut(s) | 695 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 695 |
| AspLEI | GCGC | 4 cut(s) | 105, 343, 632, 766 |
| AspS9I | GGNCC | 8 cut(s) | 94, 166, 189, 226, 454, 784, 796, 888 |
| AsuC2I | CCSGG | 2 cut(s) | 4, 564 |
| AsuHPI | GGTGA | 3 cut(s) | 252, 439, 587 |
| AsuNHI | GCTAGC | 1 cut(s) | 535 |
| AvaII | GGWCC | 3 cut(s) | 166, 454, 888 |
| BanII | GRGCYC | 1 cut(s) | 646 |
| BauI | CACGAG | 3 cut(s) | 300, 540, 822 |
| BbvCI | CCTCAGC | 1 cut(s) | 194 |
| BbvI | GCAGC | 9 cut(s) | 185, 188, 396, 472, 475, 478, 609, 764, 1030 |
| BccI | CCATC | 1 cut(s) | 689 |
| BceAI | ACGGC | 1 cut(s) | 945 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 199, 220, 233, 254 |
| BciT130I | CCWGG | 6 cut(s) | 329, 357, 627, 782, 934, 1001 |
| BcnI | CCSGG | 2 cut(s) | 4, 564 |
| BcoDI | GTCTC | 1 cut(s) | 852 |
| BfaI | CTAG | 3 cut(s) | 536, 582, 971 |
| BfmI | CTRYAG | 1 cut(s) | 410 |
| BfoI | RGCGCY | 1 cut(s) | 344 |
| BfuAI | ACCTGC | 1 cut(s) | 232 |
| BglII | AGATCT | 1 cut(s) | 901 |
| Bme1390I | CCNGG | 8 cut(s) | 4, 329, 357, 564, 627, 782, 934, 1001 |
| Bme18I | GGWCC | 3 cut(s) | 166, 454, 888 |
| BmgT120I | GGNCC | 8 cut(s) | 94, 166, 189, 226, 454, 784, 796, 888 |
| BmiI | GGNNCC | 7 cut(s) | 30, 191, 228, 309, 456, 468, 890 |
| BmrFI | CCNGG | 8 cut(s) | 4, 329, 357, 564, 627, 782, 934, 1001 |
| BmrI | ACTGGG | 3 cut(s) | 190, 230, 727 |
| BmsI | GCATC | 3 cut(s) | 283, 641, 1039 |
| BmtI | GCTAGC | 1 cut(s) | 539 |
| BmuI | ACTGGG | 3 cut(s) | 190, 230, 727 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 268, 300 |
| BpmI | CTGGAG | 2 cut(s) | 668, 980 |
| Bpu10I | CCTNAGC | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 3 cut(s) | 155, 959, 990 |
| BpuMI | CCSGG | 2 cut(s) | 4, 564 |
| BsaJI | CCNNGG | 2 cut(s) | 131, 780 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 711, 741 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 241, 356, 463, 793 |
| Bse118I | RCCGGY | 1 cut(s) | 439 |
| Bse1I | ACTGG | 6 cut(s) | 168, 185, 236, 531, 733, 1053 |
| BseBI | CCWGG | 6 cut(s) | 329, 357, 627, 782, 934, 1001 |
| BseDI | CCNNGG | 2 cut(s) | 131, 780 |
| BseGI | GGATG | 3 cut(s) | 298, 559, 632 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 241, 356, 463, 793 |
| BseMII | CTCAG | 4 cut(s) | 208, 647, 678, 1007 |
| BseNI | ACTGG | 6 cut(s) | 168, 185, 236, 531, 733, 1053 |
| BseRI | GAGGAG | 2 cut(s) | 808, 962 |
| BseXI | GCAGC | 9 cut(s) | 185, 188, 396, 472, 475, 478, 609, 764, 1030 |
| BsgI | GTGCAG | 1 cut(s) | 260 |
| Bsh1236I | CGCG | 4 cut(s) | 398, 672, 758, 1014 |
| BshFI | GGCC | 9 cut(s) | 95, 190, 227, 785, 798, 932, 977, 1031, 1098 |
| BsiSI | CCGG | 4 cut(s) | 3, 406, 440, 564 |
| BslFI | GGGAC | 4 cut(s) | 440, 594, 599, 874 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 241, 356, 463, 793 |
| BsmAI | GTCTC | 1 cut(s) | 852 |
| BsmFI | GGGAC | 4 cut(s) | 440, 594, 599, 874 |
| BsmI | GAATGC | 1 cut(s) | 285 |
| BsnI | GGCC | 9 cut(s) | 95, 190, 227, 785, 798, 932, 977, 1031, 1098 |
| Bsp1286I | GDGCHC | 1 cut(s) | 646 |
| Bsp143I | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| Bsp68I | TCGCGA | 3 cut(s) | 398, 672, 1014 |
| BspANI | GGCC | 9 cut(s) | 95, 190, 227, 785, 798, 932, 977, 1031, 1098 |
| BspCNI | CTCAG | 4 cut(s) | 207, 648, 679, 1006 |
| BspFNI | CGCG | 4 cut(s) | 398, 672, 758, 1014 |
| BspHI | TCATGA | 1 cut(s) | 1090 |
| BspLI | GGNNCC | 7 cut(s) | 30, 191, 228, 309, 456, 468, 890 |
| BspMAI | CTGCAG | 1 cut(s) | 414 |
| BspMI | ACCTGC | 1 cut(s) | 232 |
| BspOI | GCTAGC | 1 cut(s) | 539 |
| BspPI | GGATC | 3 cut(s) | 122, 226, 875 |
| BsrFI | RCCGGY | 1 cut(s) | 439 |
| BsrI | ACTGG | 6 cut(s) | 168, 185, 236, 531, 733, 1053 |
| BssAI | RCCGGY | 1 cut(s) | 439 |
| BssECI | CCNNGG | 2 cut(s) | 131, 780 |
| BssMI | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| BssSI | CACGAG | 3 cut(s) | 300, 540, 822 |
| Bst2BI | CACGAG | 3 cut(s) | 300, 540, 822 |
| Bst2UI | CCWGG | 6 cut(s) | 329, 357, 627, 782, 934, 1001 |
| Bst4CI | ACNGT | 3 cut(s) | 19, 599, 717 |
| Bst6I | CTCTTC | 2 cut(s) | 55, 267 |
| BstC8I | GCNNGC | 9 cut(s) | 97, 101, 400, 537, 674, 678, 768, 1012, 1038 |
| BstDEI | CTNAG | 4 cut(s) | 194, 656, 687, 993 |
| BstDSI | CCRYGG | 1 cut(s) | 131 |
| BstF5I | GGATG | 3 cut(s) | 298, 559, 632 |
| BstFNI | CGCG | 4 cut(s) | 398, 672, 758, 1014 |
| BstH2I | RGCGCY | 1 cut(s) | 344 |
| BstHHI | GCGC | 4 cut(s) | 105, 343, 632, 766 |
| BstKTI | GATC | 6 cut(s) | 81, 130, 160, 234, 870, 904 |
| BstMAI | GTCTC | 1 cut(s) | 852 |
| BstMBI | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| BstNI | CCWGG | 6 cut(s) | 329, 357, 627, 782, 934, 1001 |
| BstSCI | CCNGG | 8 cut(s) | 2, 327, 355, 562, 625, 780, 932, 999 |
| BstSFI | CTRYAG | 1 cut(s) | 410 |
| BstUI | CGCG | 4 cut(s) | 398, 672, 758, 1014 |
| BstV1I | GCAGC | 9 cut(s) | 185, 188, 396, 472, 475, 478, 609, 764, 1030 |
| BstX2I | RGATCY | 1 cut(s) | 901 |
| BstYI | RGATCY | 1 cut(s) | 901 |
| BsuRI | GGCC | 9 cut(s) | 95, 190, 227, 785, 798, 932, 977, 1031, 1098 |
| BtgI | CCRYGG | 1 cut(s) | 131 |
| BtsCI | GGATG | 3 cut(s) | 298, 559, 632 |
| BtsI | GCAGTG | 1 cut(s) | 503 |
| BtsIMutI | CAGTG | 4 cut(s) | 243, 503, 684, 740 |
| BtuMI | TCGCGA | 3 cut(s) | 398, 672, 1014 |
| BveI | ACCTGC | 1 cut(s) | 232 |
| Cac8I | GCNNGC | 9 cut(s) | 97, 101, 400, 537, 674, 678, 768, 1012, 1038 |
| CaiI | CAGNNNCTG | 2 cut(s) | 201, 1000 |
| CciI | TCATGA | 1 cut(s) | 1090 |
| CfoI | GCGC | 4 cut(s) | 105, 343, 632, 766 |
| Cfr10I | RCCGGY | 1 cut(s) | 439 |
| Cfr13I | GGNCC | 8 cut(s) | 94, 166, 189, 226, 454, 784, 796, 888 |
| Csp6I | GTAC | 1 cut(s) | 545 |
| CviAII | CATG | 2 cut(s) | 944, 1091 |
| CviQI | GTAC | 1 cut(s) | 545 |
| DdeI | CTNAG | 4 cut(s) | 194, 656, 687, 993 |
| DpnI | GATC | 6 cut(s) | 80, 129, 159, 233, 869, 903 |
| DpnII | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| DraIII | CACNNNGTG | 1 cut(s) | 302 |
| Eam1104I | CTCTTC | 2 cut(s) | 55, 267 |
| EarI | CTCTTC | 2 cut(s) | 55, 267 |
| Eco24I | GRGCYC | 1 cut(s) | 646 |
| Eco32I | GATATC | 1 cut(s) | 616 |
| Eco47I | GGWCC | 3 cut(s) | 166, 454, 888 |
| Eco57I | CTGAAG | 1 cut(s) | 285 |
| EcoO109I | RGGNCCY | 2 cut(s) | 189, 796 |
| EcoRI | GAATTC | 1 cut(s) | 695 |
| EcoRII | CCWGG | 6 cut(s) | 327, 355, 625, 780, 932, 999 |
| EcoRV | GATATC | 1 cut(s) | 616 |
| EcoT38I | GRGCYC | 1 cut(s) | 646 |
| FaeI | CATG | 2 cut(s) | 947, 1094 |
| FaiI | YATR | 6 cut(s) | 23, 218, 248, 572, 945, 1092 |
| FaqI | GGGAC | 4 cut(s) | 440, 594, 599, 874 |
| FatI | CATG | 2 cut(s) | 943, 1090 |
| FauI | CCCGC | 1 cut(s) | 104 |
| FokI | GGATG | 3 cut(s) | 305, 546, 619 |
| FriOI | GRGCYC | 1 cut(s) | 646 |
| FspBI | CTAG | 3 cut(s) | 536, 582, 971 |
| FspI | TGCGCA | 1 cut(s) | 765 |
| GlaI | GCGC | 4 cut(s) | 104, 342, 631, 765 |
| GsuI | CTGGAG | 2 cut(s) | 668, 980 |
| HaeII | RGCGCY | 1 cut(s) | 344 |
| HaeIII | GGCC | 9 cut(s) | 95, 190, 227, 785, 798, 932, 977, 1031, 1098 |
| HapII | CCGG | 4 cut(s) | 3, 406, 440, 564 |
| HhaI | GCGC | 4 cut(s) | 105, 343, 632, 766 |
| Hin1II | CATG | 2 cut(s) | 947, 1094 |
| Hin6I | GCGC | 4 cut(s) | 103, 341, 630, 764 |
| HinP1I | GCGC | 4 cut(s) | 103, 341, 630, 764 |
| HinfI | GANTC | 7 cut(s) | 44, 556, 607, 724, 815, 877, 950 |
| HpaII | CCGG | 4 cut(s) | 3, 406, 440, 564 |
| HphI | GGTGA | 3 cut(s) | 252, 439, 587 |
| Hpy166II | GTNNAC | 2 cut(s) | 430, 545 |
| Hpy188I | TCNGA | 7 cut(s) | 55, 115, 292, 657, 982, 996, 1025 |
| Hpy8I | GTNNAC | 2 cut(s) | 430, 545 |
| Hpy99I | CGWCG | 2 cut(s) | 437, 672 |
| HpyAV | CCTTC | 5 cut(s) | 180, 403, 417, 528, 1088 |
| HpyCH4III | ACNGT | 3 cut(s) | 19, 599, 717 |
| HpyCH4IV | ACGT | 1 cut(s) | 432 |
| HpyCH4V | TGCA | 4 cut(s) | 220, 241, 296, 412 |
| HpyF3I | CTNAG | 4 cut(s) | 194, 656, 687, 993 |
| HpySE526I | ACGT | 1 cut(s) | 432 |
| Hsp92II | CATG | 2 cut(s) | 947, 1094 |
| HspAI | GCGC | 4 cut(s) | 103, 341, 630, 764 |
| Kzo9I | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| LmnI | GCTCC | 3 cut(s) | 28, 466, 961 |
| Lsp1109I | GCAGC | 9 cut(s) | 185, 188, 396, 472, 475, 478, 609, 764, 1030 |
| LweI | GCATC | 3 cut(s) | 283, 641, 1039 |
| MaeI | CTAG | 3 cut(s) | 536, 582, 971 |
| MaeII | ACGT | 1 cut(s) | 432 |
| MaeIII | GTNAC | 3 cut(s) | 553, 717, 925 |
| MalI | GATC | 6 cut(s) | 80, 129, 159, 233, 869, 903 |
| MboI | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| MboII | GAAGA | 6 cut(s) | 42, 53, 152, 284, 656, 896 |
| MfeI | CAATTG | 1 cut(s) | 221 |
| MflI | RGATCY | 1 cut(s) | 901 |
| MhlI | GDGCHC | 1 cut(s) | 646 |
| MluCI | AATT | 5 cut(s) | 36, 221, 351, 695, 914 |
| MlyI | GAGTC | 4 cut(s) | 550, 616, 809, 959 |
| MroXI | GAANNNNTTC | 1 cut(s) | 695 |
| MseI | TTAA | 2 cut(s) | 917, 1085 |
| MspA1I | CMGCKG | 2 cut(s) | 198, 1043 |
| MspI | CCGG | 4 cut(s) | 3, 406, 440, 564 |
| MspR9I | CCNGG | 8 cut(s) | 4, 329, 357, 564, 627, 782, 934, 1001 |
| MunI | CAATTG | 1 cut(s) | 221 |
| Mva1269I | GAATGC | 1 cut(s) | 285 |
| MvaI | CCWGG | 6 cut(s) | 329, 357, 627, 782, 934, 1001 |
| MvnI | CGCG | 4 cut(s) | 398, 672, 758, 1014 |
| NciI | CCSGG | 2 cut(s) | 4, 564 |
| NdeII | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| NheI | GCTAGC | 1 cut(s) | 535 |
| NlaIII | CATG | 2 cut(s) | 947, 1094 |
| NlaIV | GGNNCC | 7 cut(s) | 30, 191, 228, 309, 456, 468, 890 |
| NmeAIII | GCCGAG | 1 cut(s) | 1057 |
| NmuCI | GTSAC | 2 cut(s) | 553, 925 |
| NruI | TCGCGA | 3 cut(s) | 398, 672, 1014 |
| NsbI | TGCGCA | 1 cut(s) | 765 |
| PagI | TCATGA | 1 cut(s) | 1090 |
| PctI | GAATGC | 1 cut(s) | 285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 695 |
| PfeI | GAWTC | 3 cut(s) | 44, 724, 877 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 356 |
| PfoI | TCCNGGA | 2 cut(s) | 2, 562 |
| PleI | GAGTC | 4 cut(s) | 550, 615, 809, 958 |
| PpsI | GAGTC | 4 cut(s) | 550, 615, 809, 958 |
| Psp6I | CCWGG | 6 cut(s) | 327, 355, 625, 780, 932, 999 |
| PspGI | CCWGG | 6 cut(s) | 327, 355, 625, 780, 932, 999 |
| PspN4I | GGNNCC | 7 cut(s) | 30, 191, 228, 309, 456, 468, 890 |
| PspPI | GGNCC | 8 cut(s) | 94, 166, 189, 226, 454, 784, 796, 888 |
| PstI | CTGCAG | 1 cut(s) | 414 |
| PstNI | CAGNNNCTG | 2 cut(s) | 201, 1000 |
| PsuI | RGATCY | 1 cut(s) | 901 |
| PvuII | CAGCTG | 1 cut(s) | 198 |
| RruI | TCGCGA | 3 cut(s) | 398, 672, 1014 |
| RsaI | GTAC | 1 cut(s) | 546 |
| RsaNI | GTAC | 1 cut(s) | 545 |
| SaqAI | TTAA | 2 cut(s) | 917, 1085 |
| Sau3AI | GATC | 6 cut(s) | 78, 127, 157, 231, 867, 901 |
| Sau96I | GGNCC | 8 cut(s) | 94, 166, 189, 226, 454, 784, 796, 888 |
| SchI | GAGTC | 4 cut(s) | 550, 616, 809, 959 |
| ScrFI | CCNGG | 8 cut(s) | 4, 329, 357, 564, 627, 782, 934, 1001 |
| SduI | GDGCHC | 1 cut(s) | 646 |
| SfaNI | GCATC | 3 cut(s) | 283, 641, 1039 |
| SfcI | CTRYAG | 1 cut(s) | 410 |
| SinI | GGWCC | 3 cut(s) | 166, 454, 888 |
| SmlI | CTYRAG | 3 cut(s) | 170, 938, 1005 |
| SmoI | CTYRAG | 3 cut(s) | 170, 938, 1005 |
| Sse9I | AATT | 5 cut(s) | 36, 221, 351, 695, 914 |
| SspMI | CTAG | 3 cut(s) | 536, 582, 971 |
| StyD4I | CCNGG | 8 cut(s) | 2, 327, 355, 562, 625, 780, 932, 999 |
| TaaI | ACNGT | 3 cut(s) | 19, 599, 717 |
| TaiI | ACGT | 1 cut(s) | 435 |
| TaqI | TCGA | 3 cut(s) | 121, 160, 435 |
| TasI | AATT | 5 cut(s) | 36, 221, 351, 695, 914 |
| TatI | WGTACW | 1 cut(s) | 544 |
| TauI | GCSGC | 4 cut(s) | 86, 758, 977, 1043 |
| TfiI | GAWTC | 3 cut(s) | 44, 724, 877 |
| Tru1I | TTAA | 2 cut(s) | 917, 1085 |
| Tru9I | TTAA | 2 cut(s) | 917, 1085 |
| TscAI | CASTG | 4 cut(s) | 243, 510, 691, 740 |
| TseFI | GTSAC | 2 cut(s) | 553, 925 |
| TseI | GCWGC | 9 cut(s) | 198, 201, 409, 485, 488, 491, 622, 752, 1043 |
| Tsp45I | GTSAC | 2 cut(s) | 553, 925 |
| TspDTI | ATGAA | 5 cut(s) | 159, 591, 688, 708, 1107 |
| TspGWI | ACGGA | 3 cut(s) | 120, 603, 625 |
| TspRI | CASTG | 4 cut(s) | 243, 510, 691, 740 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 356 |
| VpaK11BI | GGWCC | 3 cut(s) | 166, 454, 888 |
| XapI | RAATTY | 1 cut(s) | 695 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 325, 1060 |
| XmnI | GAANNNNTTC | 1 cut(s) | 695 |
| XspI | CTAG | 3 cut(s) | 536, 582, 971 |