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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 249 |
| Acc16I | TGCGCA | 1 cut(s) | 447 |
| Acc36I | ACCTGC | 2 cut(s) | 25, 409 |
| AccB1I | GGYRCC | 1 cut(s) | 41 |
| AccII | CGCG | 4 cut(s) | 315, 438, 468, 495 |
| AciI | CCGC | 4 cut(s) | 74, 279, 313, 438 |
| AclI | AACGTT | 1 cut(s) | 141 |
| AcsI | RAATTY | 1 cut(s) | 338 |
| AcuI | CTGAAG | 1 cut(s) | 351 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 38, 196 |
| AjnI | CCWGG | 4 cut(s) | 24, 93, 205, 413 |
| AluBI | AGCT | 4 cut(s) | 116, 287, 335, 358 |
| AluI | AGCT | 4 cut(s) | 116, 287, 335, 358 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 104 |
| Ama87I | CYCGRG | 1 cut(s) | 152 |
| AoxI | GGCC | 2 cut(s) | 75, 439 |
| ApeKI | GCWGC | 5 cut(s) | 71, 107, 110, 113, 238 |
| ApoI | RAATTY | 1 cut(s) | 338 |
| AseI | ATTAAT | 1 cut(s) | 384 |
| AspA2I | CCTAGG | 1 cut(s) | 475 |
| AspLEI | GCGC | 3 cut(s) | 44, 275, 448 |
| AspS9I | GGNCC | 4 cut(s) | 76, 251, 421, 502 |
| AsuC2I | CCSGG | 1 cut(s) | 270 |
| AvaI | CYCGRG | 1 cut(s) | 152 |
| AvaII | GGWCC | 3 cut(s) | 251, 421, 502 |
| AvrII | CCTAGG | 1 cut(s) | 475 |
| BanI | GGYRCC | 1 cut(s) | 41 |
| BanII | GRGCYC | 1 cut(s) | 93 |
| BbvI | GCAGC | 5 cut(s) | 58, 94, 97, 125, 250 |
| BciT130I | CCWGG | 4 cut(s) | 26, 95, 207, 415 |
| BcnI | CCSGG | 1 cut(s) | 270 |
| BfaI | CTAG | 2 cut(s) | 476, 514 |
| BfmI | CTRYAG | 2 cut(s) | 111, 236 |
| BfoI | RGCGCY | 1 cut(s) | 45 |
| BfuAI | ACCTGC | 2 cut(s) | 25, 409 |
| BisI | GCNGC | 8 cut(s) | 72, 75, 108, 111, 114, 239, 313, 439 |
| BlnI | CCTAGG | 1 cut(s) | 475 |
| BlsI | GCNGC | 8 cut(s) | 73, 76, 109, 112, 115, 240, 314, 440 |
| Bme1390I | CCNGG | 5 cut(s) | 26, 95, 207, 270, 415 |
| Bme18I | GGWCC | 3 cut(s) | 251, 421, 502 |
| BmeT110I | CYCGRG | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 4 cut(s) | 76, 251, 421, 502 |
| BmiI | GGNNCC | 7 cut(s) | 30, 43, 66, 78, 201, 252, 503 |
| BmrFI | CCNGG | 5 cut(s) | 26, 95, 207, 270, 415 |
| BmsI | GCATC | 2 cut(s) | 112, 470 |
| BpuEI | CTTGAG | 1 cut(s) | 273 |
| BpuMI | CCSGG | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 4 cut(s) | 24, 93, 205, 475 |
| BsaWI | WCCGGW | 1 cut(s) | 61 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 354, 384 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 38, 196 |
| Bse118I | RCCGGY | 1 cut(s) | 67 |
| BseBI | CCWGG | 4 cut(s) | 26, 95, 207, 415 |
| BseDI | CCNNGG | 4 cut(s) | 24, 93, 205, 475 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 38, 196 |
| BseXI | GCAGC | 5 cut(s) | 58, 94, 97, 125, 250 |
| BsgI | GTGCAG | 1 cut(s) | 360 |
| Bsh1236I | CGCG | 4 cut(s) | 315, 438, 468, 495 |
| Bsh1285I | CGRYCG | 2 cut(s) | 405, 484 |
| BshFI | GGCC | 2 cut(s) | 77, 441 |
| BshNI | GGYRCC | 1 cut(s) | 41 |
| BsiEI | CGRYCG | 2 cut(s) | 405, 484 |
| BsiHKCI | CYCGRG | 1 cut(s) | 152 |
| BsiSI | CCGG | 3 cut(s) | 62, 68, 269 |
| BslFI | GGGAC | 2 cut(s) | 86, 242 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 38, 196 |
| BsmFI | GGGAC | 2 cut(s) | 86, 242 |
| BsnI | GGCC | 2 cut(s) | 77, 441 |
| BsoBI | CYCGRG | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 1 cut(s) | 93 |
| Bsp143I | GATC | 2 cut(s) | 481, 510 |
| Bsp68I | TCGCGA | 1 cut(s) | 468 |
| BspACI | CCGC | 4 cut(s) | 74, 279, 313, 438 |
| BspANI | GGCC | 2 cut(s) | 77, 441 |
| BspFNI | CGCG | 4 cut(s) | 315, 438, 468, 495 |
| BspLI | GGNNCC | 7 cut(s) | 30, 43, 66, 78, 201, 252, 503 |
| BspMAI | CTGCAG | 2 cut(s) | 115, 240 |
| BspMI | ACCTGC | 2 cut(s) | 25, 409 |
| BspT107I | GGYRCC | 1 cut(s) | 41 |
| BsrFI | RCCGGY | 1 cut(s) | 67 |
| BssAI | RCCGGY | 1 cut(s) | 67 |
| BssECI | CCNNGG | 4 cut(s) | 24, 93, 205, 475 |
| BssMI | GATC | 2 cut(s) | 481, 510 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 1 cut(s) | 475 |
| Bst2UI | CCWGG | 4 cut(s) | 26, 95, 207, 415 |
| Bst4CI | ACNGT | 2 cut(s) | 233, 406 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstFNI | CGCG | 4 cut(s) | 315, 438, 468, 495 |
| BstH2I | RGCGCY | 1 cut(s) | 45 |
| BstHHI | GCGC | 3 cut(s) | 44, 275, 448 |
| BstKTI | GATC | 2 cut(s) | 484, 513 |
| BstMBI | GATC | 2 cut(s) | 481, 510 |
| BstMCI | CGRYCG | 2 cut(s) | 405, 484 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 104, 113, 122, 175, 318, 415, 452 |
| BstNI | CCWGG | 4 cut(s) | 26, 95, 207, 415 |
| BstSCI | CCNGG | 5 cut(s) | 24, 93, 205, 268, 413 |
| BstSFI | CTRYAG | 2 cut(s) | 111, 236 |
| BstUI | CGCG | 4 cut(s) | 315, 438, 468, 495 |
| BstV1I | GCAGC | 5 cut(s) | 58, 94, 97, 125, 250 |
| BstX2I | RGATCY | 1 cut(s) | 510 |
| BstYI | RGATCY | 1 cut(s) | 510 |
| BsuRI | GGCC | 2 cut(s) | 77, 441 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| BtuMI | TCGCGA | 1 cut(s) | 468 |
| BveI | ACCTGC | 2 cut(s) | 25, 409 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| CaiI | CAGNNNCTG | 1 cut(s) | 104 |
| CfoI | GCGC | 3 cut(s) | 44, 275, 448 |
| Cfr10I | RCCGGY | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 4 cut(s) | 76, 251, 421, 502 |
| CseI | GACGC | 1 cut(s) | 484 |
| CviAII | CATG | 1 cut(s) | 425 |
| DinI | GGCGCC | 1 cut(s) | 43 |
| DpnI | GATC | 2 cut(s) | 483, 512 |
| DpnII | GATC | 2 cut(s) | 481, 510 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 249 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 249 |
| Eco130I | CCWWGG | 1 cut(s) | 475 |
| Eco24I | GRGCYC | 1 cut(s) | 93 |
| Eco47I | GGWCC | 3 cut(s) | 251, 421, 502 |
| Eco57I | CTGAAG | 1 cut(s) | 351 |
| Eco88I | CYCGRG | 1 cut(s) | 152 |
| EcoO109I | RGGNCCY | 2 cut(s) | 251, 502 |
| EcoRI | GAATTC | 1 cut(s) | 338 |
| EcoRII | CCWGG | 4 cut(s) | 24, 93, 205, 413 |
| EcoT14I | CCWWGG | 1 cut(s) | 475 |
| EcoT38I | GRGCYC | 1 cut(s) | 93 |
| EgeI | GGCGCC | 1 cut(s) | 43 |
| EheI | GGCGCC | 1 cut(s) | 43 |
| ErhI | CCWWGG | 1 cut(s) | 475 |
| FaeI | CATG | 1 cut(s) | 428 |
| FaiI | YATR | 5 cut(s) | 50, 134, 352, 354, 426 |
| FaqI | GGGAC | 2 cut(s) | 86, 242 |
| FatI | CATG | 1 cut(s) | 424 |
| Fnu4HI | GCNGC | 8 cut(s) | 72, 75, 108, 111, 114, 239, 313, 439 |
| FriOI | GRGCYC | 1 cut(s) | 93 |
| Fsp4HI | GCNGC | 8 cut(s) | 72, 75, 108, 111, 114, 239, 313, 439 |
| FspBI | CTAG | 2 cut(s) | 476, 514 |
| FspI | TGCGCA | 1 cut(s) | 447 |
| GlaI | GCGC | 3 cut(s) | 43, 274, 447 |
| GluI | GCNGC | 8 cut(s) | 72, 75, 108, 111, 114, 239, 313, 439 |
| HaeII | RGCGCY | 1 cut(s) | 45 |
| HaeIII | GGCC | 2 cut(s) | 77, 441 |
| HapII | CCGG | 3 cut(s) | 62, 68, 269 |
| HgaI | GACGC | 1 cut(s) | 484 |
| HhaI | GCGC | 3 cut(s) | 44, 275, 448 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin1II | CATG | 1 cut(s) | 428 |
| Hin6I | GCGC | 3 cut(s) | 42, 273, 446 |
| HinP1I | GCGC | 3 cut(s) | 42, 273, 446 |
| HinfI | GANTC | 3 cut(s) | 210, 470, 490 |
| HpaII | CCGG | 3 cut(s) | 62, 68, 269 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 254, 290, 467 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 1 cut(s) | 91 |
| HpyCH4III | ACNGT | 2 cut(s) | 233, 406 |
| HpyCH4IV | ACGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 4 cut(s) | 113, 238, 377, 409 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 104, 113, 122, 175, 318, 415, 452 |
| HpySE526I | ACGT | 1 cut(s) | 141 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| Hsp92II | CATG | 1 cut(s) | 428 |
| HspAI | GCGC | 3 cut(s) | 42, 273, 446 |
| KasI | GGCGCC | 1 cut(s) | 41 |
| Kzo9I | GATC | 2 cut(s) | 481, 510 |
| LmnI | GCTCC | 1 cut(s) | 205 |
| Lsp1109I | GCAGC | 5 cut(s) | 58, 94, 97, 125, 250 |
| LweI | GCATC | 2 cut(s) | 112, 470 |
| MaeI | CTAG | 2 cut(s) | 476, 514 |
| MaeII | ACGT | 1 cut(s) | 141 |
| MaeIII | GTNAC | 1 cut(s) | 211 |
| MalI | GATC | 2 cut(s) | 483, 512 |
| MboI | GATC | 2 cut(s) | 481, 510 |
| MflI | RGATCY | 1 cut(s) | 510 |
| MhlI | GDGCHC | 1 cut(s) | 93 |
| MluCI | AATT | 1 cut(s) | 338 |
| Mly113I | GGCGCC | 1 cut(s) | 42 |
| MlyI | GAGTC | 2 cut(s) | 219, 464 |
| MnlI | CCTC | 5 cut(s) | 168, 200, 219, 380, 451 |
| MseI | TTAA | 1 cut(s) | 384 |
| MspA1I | CMGCKG | 1 cut(s) | 116 |
| MspI | CCGG | 3 cut(s) | 62, 68, 269 |
| MspR9I | CCNGG | 5 cut(s) | 26, 95, 207, 270, 415 |
| MvaI | CCWGG | 4 cut(s) | 26, 95, 207, 415 |
| MvnI | CGCG | 4 cut(s) | 315, 438, 468, 495 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 104, 113, 122, 175, 318, 415, 452 |
| NarI | GGCGCC | 1 cut(s) | 42 |
| NciI | CCSGG | 1 cut(s) | 270 |
| NdeII | GATC | 2 cut(s) | 481, 510 |
| NlaIII | CATG | 1 cut(s) | 428 |
| NlaIV | GGNNCC | 7 cut(s) | 30, 43, 66, 78, 201, 252, 503 |
| NmuCI | GTSAC | 1 cut(s) | 211 |
| NruI | TCGCGA | 1 cut(s) | 468 |
| NsbI | TGCGCA | 1 cut(s) | 447 |
| PfeI | GAWTC | 1 cut(s) | 490 |
| PkrI | GCNGC | 8 cut(s) | 73, 76, 109, 112, 115, 240, 314, 440 |
| Ple19I | CGATCG | 1 cut(s) | 484 |
| PleI | GAGTC | 2 cut(s) | 218, 464 |
| PluTI | GGCGCC | 1 cut(s) | 45 |
| PpsI | GAGTC | 2 cut(s) | 218, 464 |
| PpuMI | RGGWCCY | 2 cut(s) | 251, 502 |
| PshBI | ATTAAT | 1 cut(s) | 384 |
| Psp1406I | AACGTT | 1 cut(s) | 141 |
| Psp5II | RGGWCCY | 2 cut(s) | 251, 502 |
| Psp6I | CCWGG | 4 cut(s) | 24, 93, 205, 413 |
| PspGI | CCWGG | 4 cut(s) | 24, 93, 205, 413 |
| PspN4I | GGNNCC | 7 cut(s) | 30, 43, 66, 78, 201, 252, 503 |
| PspPI | GGNCC | 4 cut(s) | 76, 251, 421, 502 |
| PspPPI | RGGWCCY | 2 cut(s) | 251, 502 |
| PstI | CTGCAG | 2 cut(s) | 115, 240 |
| PstNI | CAGNNNCTG | 1 cut(s) | 104 |
| PsuI | RGATCY | 1 cut(s) | 510 |
| PvuI | CGATCG | 1 cut(s) | 484 |
| PvuII | CAGCTG | 1 cut(s) | 116 |
| RruI | TCGCGA | 1 cut(s) | 468 |
| SaqAI | TTAA | 1 cut(s) | 384 |
| SatI | GCNGC | 8 cut(s) | 72, 75, 108, 111, 114, 239, 313, 439 |
| Sau3AI | GATC | 2 cut(s) | 481, 510 |
| Sau96I | GGNCC | 4 cut(s) | 76, 251, 421, 502 |
| SchI | GAGTC | 2 cut(s) | 219, 464 |
| ScrFI | CCNGG | 5 cut(s) | 26, 95, 207, 270, 415 |
| SduI | GDGCHC | 1 cut(s) | 93 |
| SfaNI | GCATC | 2 cut(s) | 112, 470 |
| SfcI | CTRYAG | 2 cut(s) | 111, 236 |
| SfoI | GGCGCC | 1 cut(s) | 43 |
| SinI | GGWCC | 3 cut(s) | 251, 421, 502 |
| SmlI | CTYRAG | 1 cut(s) | 288 |
| SmoI | CTYRAG | 1 cut(s) | 288 |
| Sse9I | AATT | 1 cut(s) | 338 |
| SsiI | CCGC | 4 cut(s) | 74, 279, 313, 438 |
| SspDI | GGCGCC | 1 cut(s) | 41 |
| SspMI | CTAG | 2 cut(s) | 476, 514 |
| StyD4I | CCNGG | 5 cut(s) | 24, 93, 205, 268, 413 |
| StyI | CCWWGG | 1 cut(s) | 475 |
| TaaI | ACNGT | 2 cut(s) | 233, 406 |
| TaiI | ACGT | 1 cut(s) | 144 |
| TaqI | TCGA | 3 cut(s) | 87, 192, 484 |
| TasI | AATT | 1 cut(s) | 338 |
| TauI | GCSGC | 3 cut(s) | 77, 315, 441 |
| TfiI | GAWTC | 1 cut(s) | 490 |
| Tru1I | TTAA | 1 cut(s) | 384 |
| Tru9I | TTAA | 1 cut(s) | 384 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseFI | GTSAC | 1 cut(s) | 211 |
| TseI | GCWGC | 5 cut(s) | 71, 107, 110, 113, 238 |
| Tsp45I | GTSAC | 1 cut(s) | 211 |
| TspDTI | ATGAA | 1 cut(s) | 234 |
| TspGWI | ACGGA | 1 cut(s) | 394 |
| TspRI | CASTG | 1 cut(s) | 334 |
| VpaK11BI | GGWCC | 3 cut(s) | 251, 421, 502 |
| VspI | ATTAAT | 1 cut(s) | 384 |
| XapI | RAATTY | 1 cut(s) | 338 |
| XmaJI | CCTAGG | 1 cut(s) | 475 |
| XspI | CTAG | 2 cut(s) | 476, 514 |