Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 212, 808 |
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 1 cut(s) | 269 |
| AccII | CGCG | 4 cut(s) | 342, 355, 421, 927 |
| AclWI | GGATC | 3 cut(s) | 366, 835, 848 |
| AcoI | YGGCCR | 2 cut(s) | 302, 721 |
| AfaI | GTAC | 3 cut(s) | 321, 750, 938 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 294, 482, 583, 752 |
| AflIII | ACRYGT | 1 cut(s) | 807 |
| AgeI | ACCGGT | 1 cut(s) | 745 |
| AgsI | TTSAA | 2 cut(s) | 101, 635 |
| AjnI | CCWGG | 2 cut(s) | 247, 332 |
| AluBI | AGCT | 2 cut(s) | 56, 365 |
| AluI | AGCT | 2 cut(s) | 56, 365 |
| Alw26I | GTCTC | 3 cut(s) | 320, 338, 794 |
| AlwI | GGATC | 3 cut(s) | 366, 835, 848 |
| AoxI | GGCC | 6 cut(s) | 302, 469, 537, 708, 721, 814 |
| ApeKI | GCWGC | 1 cut(s) | 56 |
| AsiGI | ACCGGT | 1 cut(s) | 745 |
| AspLEI | GCGC | 2 cut(s) | 355, 557 |
| AspS9I | GGNCC | 3 cut(s) | 538, 709, 815 |
| AsuC2I | CCSGG | 1 cut(s) | 599 |
| AsuHPI | GGTGA | 1 cut(s) | 517 |
| BaeGI | GKGCMC | 1 cut(s) | 274 |
| BalI | TGGCCA | 1 cut(s) | 304 |
| BamHI | GGATCC | 1 cut(s) | 840 |
| BanI | GGYRCC | 1 cut(s) | 269 |
| BanII | GRGCYC | 3 cut(s) | 161, 738, 760 |
| BauI | CACGAG | 1 cut(s) | 348 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| BbvI | GCAGC | 1 cut(s) | 43 |
| BccI | CCATC | 6 cut(s) | 150, 288, 313, 476, 573, 909 |
| BceAI | ACGGC | 3 cut(s) | 723, 736, 852 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 61, 72, 95, 176, 210 |
| BciT130I | CCWGG | 2 cut(s) | 249, 334 |
| BclI | TGATCA | 2 cut(s) | 28, 898 |
| BcnI | CCSGG | 1 cut(s) | 599 |
| BcoDI | GTCTC | 3 cut(s) | 320, 338, 794 |
| BfaI | CTAG | 1 cut(s) | 362 |
| BfoI | RGCGCY | 1 cut(s) | 558 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BisI | GCNGC | 6 cut(s) | 57, 167, 262, 378, 724, 925 |
| BlsI | GCNGC | 6 cut(s) | 58, 168, 263, 379, 725, 926 |
| BmcAI | AGTACT | 1 cut(s) | 938 |
| Bme1390I | CCNGG | 3 cut(s) | 249, 334, 599 |
| BmgT120I | GGNCC | 3 cut(s) | 538, 709, 815 |
| BmiI | GGNNCC | 6 cut(s) | 6, 271, 568, 757, 817, 842 |
| BmrFI | CCNGG | 3 cut(s) | 249, 334, 599 |
| BmsI | GCATC | 3 cut(s) | 81, 447, 777 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 427, 459 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 700 |
| BpuMI | CCSGG | 1 cut(s) | 599 |
| BsaI | GGTCTC | 1 cut(s) | 794 |
| BsaJI | CCNNGG | 1 cut(s) | 534 |
| BsaWI | WCCGGW | 3 cut(s) | 149, 322, 745 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 775, 805 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 294, 482, 583, 752 |
| Bse118I | RCCGGY | 2 cut(s) | 745, 892 |
| Bse1I | ACTGG | 3 cut(s) | 230, 472, 688 |
| BseBI | CCWGG | 2 cut(s) | 249, 334 |
| BseDI | CCNNGG | 1 cut(s) | 534 |
| BseGI | GGATG | 3 cut(s) | 305, 876, 941 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 294, 482, 583, 752 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| BseNI | ACTGG | 3 cut(s) | 230, 472, 688 |
| BseSI | GKGCMC | 1 cut(s) | 274 |
| BseX3I | CGGCCG | 1 cut(s) | 721 |
| BseXI | GCAGC | 1 cut(s) | 43 |
| BseYI | CCCAGC | 2 cut(s) | 264, 540 |
| BsgI | GTGCAG | 1 cut(s) | 646 |
| Bsh1236I | CGCG | 4 cut(s) | 342, 355, 421, 927 |
| Bsh1285I | CGRYCG | 2 cut(s) | 550, 724 |
| BshFI | GGCC | 6 cut(s) | 304, 471, 539, 710, 723, 816 |
| BshNI | GGYRCC | 1 cut(s) | 269 |
| BshTI | ACCGGT | 1 cut(s) | 745 |
| BsiEI | CGRYCG | 2 cut(s) | 550, 724 |
| BsiSI | CCGG | 6 cut(s) | 150, 323, 598, 746, 813, 893 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 294, 482, 583, 752 |
| BsmAI | GTCTC | 3 cut(s) | 320, 338, 794 |
| BsmI | GAATGC | 1 cut(s) | 379 |
| BsnI | GGCC | 6 cut(s) | 304, 471, 539, 710, 723, 816 |
| Bso31I | GGTCTC | 1 cut(s) | 794 |
| Bsp1286I | GDGCHC | 4 cut(s) | 161, 274, 738, 760 |
| Bsp143I | GATC | 4 cut(s) | 28, 358, 840, 898 |
| Bsp19I | CCATGG | 1 cut(s) | 534 |
| Bsp68I | TCGCGA | 2 cut(s) | 342, 421 |
| BspANI | GGCC | 6 cut(s) | 304, 471, 539, 710, 723, 816 |
| BspCNI | CTCAG | 1 cut(s) | 147 |
| BspFNI | CGCG | 4 cut(s) | 342, 355, 421, 927 |
| BspLI | GGNNCC | 6 cut(s) | 6, 271, 568, 757, 817, 842 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 3 cut(s) | 366, 835, 848 |
| BspT107I | GGYRCC | 1 cut(s) | 269 |
| BspTNI | GGTCTC | 1 cut(s) | 794 |
| BsrFI | RCCGGY | 2 cut(s) | 745, 892 |
| BsrI | ACTGG | 3 cut(s) | 230, 472, 688 |
| BssAI | RCCGGY | 2 cut(s) | 745, 892 |
| BssECI | CCNNGG | 1 cut(s) | 534 |
| BssMI | GATC | 4 cut(s) | 28, 358, 840, 898 |
| BssSI | CACGAG | 1 cut(s) | 348 |
| BssT1I | CCWWGG | 1 cut(s) | 534 |
| Bst2BI | CACGAG | 1 cut(s) | 348 |
| Bst2UI | CCWGG | 2 cut(s) | 249, 334 |
| Bst4CI | ACNGT | 2 cut(s) | 548, 563 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 673 |
| BstC8I | GCNNGC | 2 cut(s) | 367, 473 |
| BstDEI | CTNAG | 3 cut(s) | 155, 700, 907 |
| BstDSI | CCRYGG | 1 cut(s) | 534 |
| BstF5I | GGATG | 3 cut(s) | 305, 876, 941 |
| BstFNI | CGCG | 4 cut(s) | 342, 355, 421, 927 |
| BstH2I | RGCGCY | 1 cut(s) | 558 |
| BstHHI | GCGC | 2 cut(s) | 355, 557 |
| BstKTI | GATC | 4 cut(s) | 31, 361, 843, 901 |
| BstMAI | GTCTC | 3 cut(s) | 320, 338, 794 |
| BstMBI | GATC | 4 cut(s) | 28, 358, 840, 898 |
| BstMCI | CGRYCG | 2 cut(s) | 550, 724 |
| BstNI | CCWGG | 2 cut(s) | 249, 334 |
| BstNSI | RCATGY | 1 cut(s) | 811 |
| BstSCI | CCNGG | 3 cut(s) | 247, 332, 597 |
| BstSLI | GKGCMC | 1 cut(s) | 274 |
| BstUI | CGCG | 4 cut(s) | 342, 355, 421, 927 |
| BstV1I | GCAGC | 1 cut(s) | 43 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BstX2I | RGATCY | 2 cut(s) | 358, 840 |
| BstYI | RGATCY | 2 cut(s) | 358, 840 |
| BstZI | CGGCCG | 1 cut(s) | 721 |
| BsuRI | GGCC | 6 cut(s) | 304, 471, 539, 710, 723, 816 |
| BtgI | CCRYGG | 1 cut(s) | 534 |
| BtsCI | GGATG | 3 cut(s) | 305, 876, 941 |
| BtsIMutI | CAGTG | 2 cut(s) | 568, 681 |
| BtuMI | TCGCGA | 2 cut(s) | 342, 421 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 2 cut(s) | 367, 473 |
| CfoI | GCGC | 2 cut(s) | 355, 557 |
| Cfr10I | RCCGGY | 2 cut(s) | 745, 892 |
| Cfr13I | GGNCC | 3 cut(s) | 538, 709, 815 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 3 cut(s) | 320, 749, 937 |
| CspAI | ACCGGT | 1 cut(s) | 745 |
| CviAII | CATG | 3 cut(s) | 500, 535, 808 |
| CviQI | GTAC | 3 cut(s) | 320, 749, 937 |
| DdeI | CTNAG | 3 cut(s) | 155, 700, 907 |
| DpnI | GATC | 4 cut(s) | 30, 360, 842, 900 |
| DpnII | GATC | 4 cut(s) | 28, 358, 840, 898 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 212, 808 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 212, 808 |
| EaeI | YGGCCR | 2 cut(s) | 302, 721 |
| EagI | CGGCCG | 1 cut(s) | 721 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 673 |
| EarI | CTCTTC | 2 cut(s) | 33, 673 |
| EciI | GGCGGA | 1 cut(s) | 854 |
| EclXI | CGGCCG | 1 cut(s) | 721 |
| Eco130I | CCWWGG | 1 cut(s) | 534 |
| Eco24I | GRGCYC | 3 cut(s) | 161, 738, 760 |
| Eco31I | GGTCTC | 1 cut(s) | 794 |
| Eco32I | GATATC | 1 cut(s) | 454 |
| Eco52I | CGGCCG | 1 cut(s) | 721 |
| EcoRII | CCWGG | 2 cut(s) | 247, 332 |
| EcoRV | GATATC | 1 cut(s) | 454 |
| EcoT14I | CCWWGG | 1 cut(s) | 534 |
| EcoT38I | GRGCYC | 3 cut(s) | 161, 738, 760 |
| ErhI | CCWWGG | 1 cut(s) | 534 |
| FaeI | CATG | 3 cut(s) | 503, 538, 811 |
| FaiI | YATR | 9 cut(s) | 202, 393, 495, 501, 536, 606, 656, 775, 809 |
| FatI | CATG | 3 cut(s) | 499, 534, 807 |
| FauI | CCCGC | 2 cut(s) | 348, 888 |
| FbaI | TGATCA | 2 cut(s) | 28, 898 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 167, 262, 378, 724, 925 |
| FokI | GGATG | 3 cut(s) | 292, 863, 928 |
| FriOI | GRGCYC | 3 cut(s) | 161, 738, 760 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 167, 262, 378, 724, 925 |
| FspBI | CTAG | 1 cut(s) | 362 |
| GlaI | GCGC | 2 cut(s) | 354, 556 |
| GluI | GCNGC | 6 cut(s) | 57, 167, 262, 378, 724, 925 |
| GsaI | CCCAGC | 2 cut(s) | 268, 544 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 1 cut(s) | 558 |
| HaeIII | GGCC | 6 cut(s) | 304, 471, 539, 710, 723, 816 |
| HapII | CCGG | 6 cut(s) | 150, 323, 598, 746, 813, 893 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 2 cut(s) | 355, 557 |
| Hin1II | CATG | 3 cut(s) | 503, 538, 811 |
| Hin6I | GCGC | 2 cut(s) | 353, 555 |
| HinP1I | GCGC | 2 cut(s) | 353, 555 |
| HincII | GTYRAC | 2 cut(s) | 221, 520 |
| HindII | GTYRAC | 2 cut(s) | 221, 520 |
| HinfI | GANTC | 1 cut(s) | 512 |
| HpaII | CCGG | 6 cut(s) | 150, 323, 598, 746, 813, 893 |
| HphI | GGTGA | 1 cut(s) | 517 |
| Hpy166II | GTNNAC | 3 cut(s) | 221, 320, 520 |
| Hpy188I | TCNGA | 4 cut(s) | 139, 239, 740, 755 |
| Hpy188III | TCNNGA | 7 cut(s) | 32, 341, 420, 632, 823, 838, 844 |
| Hpy8I | GTNNAC | 3 cut(s) | 221, 320, 520 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 709, 787 |
| HpyAV | CCTTC | 3 cut(s) | 137, 423, 829 |
| HpyCH4III | ACNGT | 2 cut(s) | 548, 563 |
| HpyCH4V | TGCA | 3 cut(s) | 499, 611, 663 |
| HpyF3I | CTNAG | 3 cut(s) | 155, 700, 907 |
| Hsp92II | CATG | 3 cut(s) | 503, 538, 811 |
| HspAI | GCGC | 2 cut(s) | 353, 555 |
| Ksp22I | TGATCA | 2 cut(s) | 28, 898 |
| Kzo9I | GATC | 4 cut(s) | 28, 358, 840, 898 |
| LmnI | GCTCC | 3 cut(s) | 10, 129, 755 |
| Lsp1109I | GCAGC | 1 cut(s) | 43 |
| LweI | GCATC | 3 cut(s) | 81, 447, 777 |
| MaeI | CTAG | 1 cut(s) | 362 |
| MalI | GATC | 4 cut(s) | 30, 360, 842, 900 |
| MboI | GATC | 4 cut(s) | 28, 358, 840, 898 |
| MboII | GAAGA | 5 cut(s) | 50, 89, 252, 660, 853 |
| MflI | RGATCY | 2 cut(s) | 358, 840 |
| MhlI | GDGCHC | 4 cut(s) | 161, 274, 738, 760 |
| MlsI | TGGCCA | 1 cut(s) | 304 |
| MluCI | AATT | 2 cut(s) | 506, 621 |
| MluNI | TGGCCA | 1 cut(s) | 304 |
| MmeI | TCCRAC | 2 cut(s) | 162, 429 |
| Mox20I | TGGCCA | 1 cut(s) | 304 |
| MscI | TGGCCA | 1 cut(s) | 304 |
| MseI | TTAA | 1 cut(s) | 44 |
| Msp20I | TGGCCA | 1 cut(s) | 304 |
| MspA1I | CMGCKG | 1 cut(s) | 618 |
| MspI | CCGG | 6 cut(s) | 150, 323, 598, 746, 813, 893 |
| MspR9I | CCNGG | 3 cut(s) | 249, 334, 599 |
| Mva1269I | GAATGC | 1 cut(s) | 379 |
| MvaI | CCWGG | 2 cut(s) | 249, 334 |
| MvnI | CGCG | 4 cut(s) | 342, 355, 421, 927 |
| NciI | CCSGG | 1 cut(s) | 599 |
| NcoI | CCATGG | 1 cut(s) | 534 |
| NdeII | GATC | 4 cut(s) | 28, 358, 840, 898 |
| NlaIII | CATG | 3 cut(s) | 503, 538, 811 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 271, 568, 757, 817, 842 |
| NruI | TCGCGA | 2 cut(s) | 342, 421 |
| NspI | RCATGY | 1 cut(s) | 811 |
| PciI | ACATGT | 1 cut(s) | 807 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 210, 346 |
| PctI | GAATGC | 1 cut(s) | 379 |
| PfeI | GAWTC | 1 cut(s) | 512 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PinAI | ACCGGT | 1 cut(s) | 745 |
| PkrI | GCNGC | 6 cut(s) | 58, 168, 263, 379, 725, 926 |
| PscI | ACATGT | 1 cut(s) | 807 |
| Psp6I | CCWGG | 2 cut(s) | 247, 332 |
| PspFI | CCCAGC | 2 cut(s) | 264, 540 |
| PspGI | CCWGG | 2 cut(s) | 247, 332 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 271, 568, 757, 817, 842 |
| PspPI | GGNCC | 3 cut(s) | 538, 709, 815 |
| PsuI | RGATCY | 2 cut(s) | 358, 840 |
| RruI | TCGCGA | 2 cut(s) | 342, 421 |
| RsaI | GTAC | 3 cut(s) | 321, 750, 938 |
| RsaNI | GTAC | 3 cut(s) | 320, 749, 937 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 6 cut(s) | 57, 167, 262, 378, 724, 925 |
| Sau3AI | GATC | 4 cut(s) | 28, 358, 840, 898 |
| Sau96I | GGNCC | 3 cut(s) | 538, 709, 815 |
| ScaI | AGTACT | 1 cut(s) | 938 |
| ScrFI | CCNGG | 3 cut(s) | 249, 334, 599 |
| SduI | GDGCHC | 4 cut(s) | 161, 274, 738, 760 |
| SfaNI | GCATC | 3 cut(s) | 81, 447, 777 |
| Sse9I | AATT | 2 cut(s) | 506, 621 |
| SspI | AATATT | 1 cut(s) | 638 |
| SspMI | CTAG | 1 cut(s) | 362 |
| StyD4I | CCNGG | 3 cut(s) | 247, 332, 597 |
| StyI | CCWWGG | 1 cut(s) | 534 |
| TaaI | ACNGT | 2 cut(s) | 548, 563 |
| TaqI | TCGA | 5 cut(s) | 115, 283, 399, 530, 913 |
| TasI | AATT | 2 cut(s) | 506, 621 |
| TatI | WGTACW | 1 cut(s) | 936 |
| TauI | GCSGC | 5 cut(s) | 169, 264, 380, 726, 927 |
| TfiI | GAWTC | 1 cut(s) | 512 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 2 cut(s) | 568, 688 |
| TseI | GCWGC | 1 cut(s) | 56 |
| TspDTI | ATGAA | 1 cut(s) | 101 |
| TspGWI | ACGGA | 1 cut(s) | 206 |
| TspRI | CASTG | 2 cut(s) | 568, 688 |
| XceI | RCATGY | 1 cut(s) | 811 |
| XspI | CTAG | 1 cut(s) | 362 |
| ZrmI | AGTACT | 1 cut(s) | 938 |