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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 336, 696 |
| Acc16I | TGCGCA | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccI | GTMKAC | 1 cut(s) | 220 |
| AccII | CGCG | 1 cut(s) | 531 |
| AciI | CCGC | 7 cut(s) | 8, 88, 320, 323, 531, 648, 702 |
| AcoI | YGGCCR | 2 cut(s) | 302, 681 |
| AcsI | RAATTY | 1 cut(s) | 485 |
| AcuI | CTGAAG | 1 cut(s) | 241 |
| AfaI | GTAC | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 461, 555, 697, 708 |
| AflIII | ACRYGT | 1 cut(s) | 145 |
| AjnI | CCWGG | 2 cut(s) | 247, 678 |
| AluBI | AGCT | 2 cut(s) | 328, 546 |
| AluI | AGCT | 2 cut(s) | 328, 546 |
| Alw26I | GTCTC | 2 cut(s) | 109, 246 |
| AoxI | GGCC | 6 cut(s) | 195, 205, 302, 516, 681, 699 |
| ApeKI | GCWGC | 2 cut(s) | 353, 543 |
| ApoI | RAATTY | 1 cut(s) | 485 |
| AspLEI | GCGC | 1 cut(s) | 274 |
| AspS9I | GGNCC | 4 cut(s) | 196, 243, 517, 665 |
| AsuHPI | GGTGA | 1 cut(s) | 476 |
| AvaII | GGWCC | 2 cut(s) | 243, 665 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BalI | TGGCCA | 2 cut(s) | 304, 683 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 3 cut(s) | 45, 161, 471 |
| BbvI | GCAGC | 2 cut(s) | 340, 555 |
| BccI | CCATC | 3 cut(s) | 221, 313, 464 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 72, 263, 297 |
| BciT130I | CCWGG | 2 cut(s) | 249, 680 |
| BcoDI | GTCTC | 2 cut(s) | 109, 246 |
| BisI | GCNGC | 4 cut(s) | 321, 354, 544, 702 |
| BlsI | GCNGC | 4 cut(s) | 322, 355, 545, 703 |
| Bme1390I | CCNGG | 2 cut(s) | 249, 680 |
| Bme18I | GGWCC | 2 cut(s) | 243, 665 |
| BmgT120I | GGNCC | 4 cut(s) | 196, 243, 517, 665 |
| BmiI | GGNNCC | 4 cut(s) | 6, 85, 134, 245 |
| BmrFI | CCNGG | 2 cut(s) | 249, 680 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 2 cut(s) | 270, 632 |
| BsaI | GGTCTC | 1 cut(s) | 109 |
| BsaJI | CCNNGG | 4 cut(s) | 247, 513, 554, 668 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 530, 560 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 461, 555, 697, 708 |
| Bse1I | ACTGG | 6 cut(s) | 159, 305, 451, 529, 598, 667 |
| Bse3DI | GCAATG | 1 cut(s) | 600 |
| BseBI | CCWGG | 2 cut(s) | 249, 680 |
| BseDI | CCNNGG | 4 cut(s) | 247, 513, 554, 668 |
| BseGI | GGATG | 3 cut(s) | 213, 305, 506 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 461, 555, 697, 708 |
| BseMI | GCAATG | 1 cut(s) | 600 |
| BseMII | CTCAG | 1 cut(s) | 142 |
| BseNI | ACTGG | 6 cut(s) | 159, 305, 451, 529, 598, 667 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 2 cut(s) | 340, 555 |
| Bsh1236I | CGCG | 1 cut(s) | 531 |
| BshFI | GGCC | 6 cut(s) | 197, 207, 304, 518, 683, 701 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 461, 555, 697, 708 |
| BsmAI | GTCTC | 2 cut(s) | 109, 246 |
| BsnI | GGCC | 6 cut(s) | 197, 207, 304, 518, 683, 701 |
| Bso31I | GGTCTC | 1 cut(s) | 109 |
| Bsp1286I | GDGCHC | 4 cut(s) | 45, 88, 161, 471 |
| Bsp143I | GATC | 1 cut(s) | 312 |
| Bsp19I | CCATGG | 1 cut(s) | 513 |
| BspACI | CCGC | 7 cut(s) | 8, 88, 320, 323, 531, 648, 702 |
| BspANI | GGCC | 6 cut(s) | 197, 207, 304, 518, 683, 701 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspFNI | CGCG | 1 cut(s) | 531 |
| BspLI | GGNNCC | 4 cut(s) | 6, 85, 134, 245 |
| BspQI | GCTCTTC | 1 cut(s) | 33 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 1 cut(s) | 109 |
| BsrDI | GCAATG | 1 cut(s) | 600 |
| BsrI | ACTGG | 6 cut(s) | 159, 305, 451, 529, 598, 667 |
| BssECI | CCNNGG | 4 cut(s) | 247, 513, 554, 668 |
| BssMI | GATC | 1 cut(s) | 312 |
| BssT1I | CCWWGG | 2 cut(s) | 513, 668 |
| Bst2UI | CCWGG | 2 cut(s) | 249, 680 |
| Bst4CI | ACNGT | 3 cut(s) | 76, 464, 558 |
| Bst6I | CTCTTC | 1 cut(s) | 33 |
| BstC8I | GCNNGC | 4 cut(s) | 61, 88, 344, 564 |
| BstDEI | CTNAG | 1 cut(s) | 128 |
| BstDSI | CCRYGG | 2 cut(s) | 513, 554 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 695 |
| BstF5I | GGATG | 3 cut(s) | 213, 305, 506 |
| BstFNI | CGCG | 1 cut(s) | 531 |
| BstHHI | GCGC | 1 cut(s) | 274 |
| BstKTI | GATC | 1 cut(s) | 315 |
| BstMAI | GTCTC | 2 cut(s) | 109, 246 |
| BstMBI | GATC | 1 cut(s) | 312 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 130, 475 |
| BstNI | CCWGG | 2 cut(s) | 249, 680 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 2 cut(s) | 247, 678 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 1 cut(s) | 531 |
| BstV1I | GCAGC | 2 cut(s) | 340, 555 |
| BsuRI | GGCC | 6 cut(s) | 197, 207, 304, 518, 683, 701 |
| BtgI | CCRYGG | 2 cut(s) | 513, 554 |
| BtsCI | GGATG | 3 cut(s) | 213, 305, 506 |
| BtsI | GCAGTG | 1 cut(s) | 119 |
| BtsIMutI | CAGTG | 2 cut(s) | 119, 660 |
| Cac8I | GCNNGC | 4 cut(s) | 61, 88, 344, 564 |
| CfoI | GCGC | 1 cut(s) | 274 |
| Cfr13I | GGNCC | 4 cut(s) | 196, 243, 517, 665 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 298 |
| CviAII | CATG | 3 cut(s) | 146, 479, 514 |
| CviQI | GTAC | 1 cut(s) | 298 |
| DdeI | CTNAG | 1 cut(s) | 128 |
| DpnI | GATC | 1 cut(s) | 314 |
| DpnII | GATC | 1 cut(s) | 312 |
| EaeI | YGGCCR | 2 cut(s) | 302, 681 |
| Eam1104I | CTCTTC | 1 cut(s) | 33 |
| EarI | CTCTTC | 1 cut(s) | 33 |
| EciI | GGCGGA | 2 cut(s) | 338, 637 |
| Eco130I | CCWWGG | 2 cut(s) | 513, 668 |
| Eco24I | GRGCYC | 3 cut(s) | 45, 161, 471 |
| Eco31I | GGTCTC | 1 cut(s) | 109 |
| Eco47I | GGWCC | 2 cut(s) | 243, 665 |
| Eco57I | CTGAAG | 1 cut(s) | 241 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 695 |
| EcoO109I | RGGNCCY | 1 cut(s) | 243 |
| EcoRII | CCWGG | 2 cut(s) | 247, 678 |
| EcoT14I | CCWWGG | 2 cut(s) | 513, 668 |
| EcoT38I | GRGCYC | 3 cut(s) | 45, 161, 471 |
| ErhI | CCWWGG | 2 cut(s) | 513, 668 |
| FaeI | CATG | 3 cut(s) | 149, 482, 517 |
| FaiI | YATR | 6 cut(s) | 147, 194, 336, 480, 515, 696 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 620, 652 |
| FatI | CATG | 3 cut(s) | 145, 478, 513 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FblI | GTMKAC | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 4 cut(s) | 321, 354, 544, 702 |
| FokI | GGATG | 3 cut(s) | 200, 292, 493 |
| FriOI | GRGCYC | 3 cut(s) | 45, 161, 471 |
| Fsp4HI | GCNGC | 4 cut(s) | 321, 354, 544, 702 |
| FspI | TGCGCA | 1 cut(s) | 273 |
| GlaI | GCGC | 1 cut(s) | 273 |
| GluI | GCNGC | 4 cut(s) | 321, 354, 544, 702 |
| GsuI | CTGGAG | 2 cut(s) | 270, 632 |
| HaeIII | GGCC | 6 cut(s) | 197, 207, 304, 518, 683, 701 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 274 |
| Hin1II | CATG | 3 cut(s) | 149, 482, 517 |
| Hin6I | GCGC | 1 cut(s) | 272 |
| HinP1I | GCGC | 1 cut(s) | 272 |
| HincII | GTYRAC | 1 cut(s) | 221 |
| HindII | GTYRAC | 1 cut(s) | 221 |
| HinfI | GANTC | 2 cut(s) | 173, 491 |
| HphI | GGTGA | 1 cut(s) | 476 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 538 |
| Hpy188I | TCNGA | 3 cut(s) | 152, 239, 496 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 112, 182, 611 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 538 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 222, 464 |
| HpyAV | CCTTC | 2 cut(s) | 234, 367 |
| HpyCH4III | ACNGT | 3 cut(s) | 76, 464, 558 |
| HpyCH4V | TGCA | 3 cut(s) | 63, 478, 627 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 130, 475 |
| HpyF3I | CTNAG | 1 cut(s) | 128 |
| Hsp92II | CATG | 3 cut(s) | 149, 482, 517 |
| HspAI | GCGC | 1 cut(s) | 272 |
| Kzo9I | GATC | 1 cut(s) | 312 |
| LguI | GCTCTTC | 1 cut(s) | 33 |
| LmnI | GCTCC | 4 cut(s) | 10, 138, 325, 551 |
| Lsp1109I | GCAGC | 2 cut(s) | 340, 555 |
| MalI | GATC | 1 cut(s) | 314 |
| MboI | GATC | 1 cut(s) | 312 |
| MboII | GAAGA | 3 cut(s) | 50, 226, 628 |
| MhlI | GDGCHC | 4 cut(s) | 45, 88, 161, 471 |
| MlsI | TGGCCA | 2 cut(s) | 304, 683 |
| MluCI | AATT | 1 cut(s) | 485 |
| MluNI | TGGCCA | 2 cut(s) | 304, 683 |
| MmeI | TCCRAC | 1 cut(s) | 130 |
| MnlI | CCTC | 3 cut(s) | 28, 209, 319 |
| Mox20I | TGGCCA | 2 cut(s) | 304, 683 |
| MscI | TGGCCA | 2 cut(s) | 304, 683 |
| Msp20I | TGGCCA | 2 cut(s) | 304, 683 |
| MspA1I | CMGCKG | 1 cut(s) | 90 |
| MspR9I | CCNGG | 2 cut(s) | 249, 680 |
| MvaI | CCWGG | 2 cut(s) | 249, 680 |
| MvnI | CGCG | 1 cut(s) | 531 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 130, 475 |
| NcoI | CCATGG | 1 cut(s) | 513 |
| NdeII | GATC | 1 cut(s) | 312 |
| NlaIII | CATG | 3 cut(s) | 149, 482, 517 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 85, 134, 245 |
| NmeAIII | GCCGAG | 1 cut(s) | 140 |
| NsbI | TGCGCA | 1 cut(s) | 273 |
| NspI | RCATGY | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 145 |
| PciSI | GCTCTTC | 1 cut(s) | 33 |
| PfeI | GAWTC | 2 cut(s) | 173, 491 |
| PkrI | GCNGC | 4 cut(s) | 322, 355, 545, 703 |
| PpuMI | RGGWCCY | 1 cut(s) | 243 |
| PscI | ACATGT | 1 cut(s) | 145 |
| PsiI | TTATAA | 2 cut(s) | 336, 696 |
| Psp5II | RGGWCCY | 1 cut(s) | 243 |
| Psp6I | CCWGG | 2 cut(s) | 247, 678 |
| PspGI | CCWGG | 2 cut(s) | 247, 678 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 85, 134, 245 |
| PspPI | GGNCC | 4 cut(s) | 196, 243, 517, 665 |
| PspPPI | RGGWCCY | 1 cut(s) | 243 |
| RsaI | GTAC | 1 cut(s) | 299 |
| RsaNI | GTAC | 1 cut(s) | 298 |
| SalI | GTCGAC | 1 cut(s) | 219 |
| SapI | GCTCTTC | 1 cut(s) | 33 |
| SatI | GCNGC | 4 cut(s) | 321, 354, 544, 702 |
| Sau3AI | GATC | 1 cut(s) | 312 |
| Sau96I | GGNCC | 4 cut(s) | 196, 243, 517, 665 |
| ScrFI | CCNGG | 2 cut(s) | 249, 680 |
| SduI | GDGCHC | 4 cut(s) | 45, 88, 161, 471 |
| SetI | ASST | 3 cut(s) | 330, 392, 548 |
| SinI | GGWCC | 2 cut(s) | 243, 665 |
| Sse9I | AATT | 1 cut(s) | 485 |
| SsiI | CCGC | 7 cut(s) | 8, 88, 320, 323, 531, 648, 702 |
| StyD4I | CCNGG | 2 cut(s) | 247, 678 |
| StyI | CCWWGG | 2 cut(s) | 513, 668 |
| TaaI | ACNGT | 3 cut(s) | 76, 464, 558 |
| TaqI | TCGA | 5 cut(s) | 220, 283, 311, 429, 459 |
| TasI | AATT | 1 cut(s) | 485 |
| TauI | GCSGC | 2 cut(s) | 323, 704 |
| TfiI | GAWTC | 2 cut(s) | 173, 491 |
| TscAI | CASTG | 2 cut(s) | 126, 667 |
| TseI | GCWGC | 2 cut(s) | 353, 543 |
| TspDTI | ATGAA | 1 cut(s) | 622 |
| TspGWI | ACGGA | 2 cut(s) | 206, 389 |
| TspRI | CASTG | 2 cut(s) | 126, 667 |
| VpaK11BI | GGWCC | 2 cut(s) | 243, 665 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 695 |
| XapI | RAATTY | 1 cut(s) | 485 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XmiI | GTMKAC | 1 cut(s) | 220 |