Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 107 |
| AccB1I | GGYRCC | 1 cut(s) | 107 |
| AccII | CGCG | 2 cut(s) | 105, 164 |
| AciI | CCGC | 3 cut(s) | 105, 410, 429 |
| AclWI | GGATC | 2 cut(s) | 373, 386 |
| AcoI | YGGCCR | 2 cut(s) | 55, 274 |
| AcsI | RAATTY | 1 cut(s) | 74 |
| AfaI | GTAC | 2 cut(s) | 109, 303 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 305 |
| AgsI | TTSAA | 3 cut(s) | 73, 95, 398 |
| AluBI | AGCT | 1 cut(s) | 120 |
| AluI | AGCT | 1 cut(s) | 120 |
| Alw21I | GWGCWC | 1 cut(s) | 313 |
| Alw44I | GTGCAC | 1 cut(s) | 309 |
| AlwI | GGATC | 2 cut(s) | 373, 386 |
| AoxI | GGCC | 4 cut(s) | 22, 55, 274, 367 |
| ApaLI | GTGCAC | 1 cut(s) | 309 |
| ApoI | RAATTY | 1 cut(s) | 74 |
| Asp718I | GGTACC | 1 cut(s) | 107 |
| AspLEI | GCGC | 1 cut(s) | 157 |
| AspS9I | GGNCC | 2 cut(s) | 239, 368 |
| AsuC2I | CCSGG | 1 cut(s) | 438 |
| AsuHPI | GGTGA | 1 cut(s) | 10 |
| AvaII | GGWCC | 1 cut(s) | 239 |
| BaeGI | GKGCMC | 1 cut(s) | 313 |
| BalI | TGGCCA | 1 cut(s) | 57 |
| BamHI | GGATCC | 1 cut(s) | 378 |
| BanI | GGYRCC | 1 cut(s) | 107 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 313 |
| BccI | CCATC | 4 cut(s) | 23, 82, 126, 160 |
| BceAI | ACGGC | 1 cut(s) | 289 |
| BcnI | CCSGG | 1 cut(s) | 438 |
| BfaI | CTAG | 2 cut(s) | 305, 417 |
| Bme1390I | CCNGG | 1 cut(s) | 438 |
| Bme18I | GGWCC | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 2 cut(s) | 239, 368 |
| BmiI | GGNNCC | 3 cut(s) | 109, 370, 380 |
| BmrFI | CCNGG | 1 cut(s) | 438 |
| BmrI | ACTGGG | 1 cut(s) | 136 |
| BmuI | ACTGGG | 1 cut(s) | 136 |
| BpuMI | CCSGG | 1 cut(s) | 438 |
| BsaAI | YACGTR | 1 cut(s) | 49 |
| BsaBI | GATNNNNATC | 1 cut(s) | 398 |
| BsaJI | CCNNGG | 2 cut(s) | 242, 436 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 305 |
| Bse118I | RCCGGY | 2 cut(s) | 20, 98 |
| Bse1I | ACTGG | 2 cut(s) | 142, 197 |
| Bse3DI | GCAATG | 1 cut(s) | 174 |
| Bse8I | GATNNNNATC | 1 cut(s) | 398 |
| BseDI | CCNNGG | 2 cut(s) | 242, 436 |
| BseGI | GGATG | 1 cut(s) | 141 |
| BseJI | GATNNNNATC | 1 cut(s) | 398 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 305 |
| BseMI | GCAATG | 1 cut(s) | 174 |
| BseNI | ACTGG | 2 cut(s) | 142, 197 |
| BseSI | GKGCMC | 1 cut(s) | 313 |
| Bsh1236I | CGCG | 2 cut(s) | 105, 164 |
| Bsh1285I | CGRYCG | 1 cut(s) | 103 |
| BshFI | GGCC | 4 cut(s) | 24, 57, 276, 369 |
| BshNI | GGYRCC | 1 cut(s) | 107 |
| BsiEI | CGRYCG | 1 cut(s) | 103 |
| BsiHKAI | GWGCWC | 1 cut(s) | 313 |
| BsiSI | CCGG | 3 cut(s) | 21, 99, 438 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 305 |
| BsnI | GGCC | 4 cut(s) | 24, 57, 276, 369 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 313 |
| Bsp143I | GATC | 1 cut(s) | 378 |
| BspACI | CCGC | 3 cut(s) | 105, 410, 429 |
| BspANI | GGCC | 4 cut(s) | 24, 57, 276, 369 |
| BspFNI | CGCG | 2 cut(s) | 105, 164 |
| BspLI | GGNNCC | 3 cut(s) | 109, 370, 380 |
| BspPI | GGATC | 2 cut(s) | 373, 386 |
| BspT107I | GGYRCC | 1 cut(s) | 107 |
| BsrDI | GCAATG | 1 cut(s) | 174 |
| BsrFI | RCCGGY | 2 cut(s) | 20, 98 |
| BsrI | ACTGG | 2 cut(s) | 142, 197 |
| BssAI | RCCGGY | 2 cut(s) | 20, 98 |
| BssECI | CCNNGG | 2 cut(s) | 242, 436 |
| BssMI | GATC | 1 cut(s) | 378 |
| BssT1I | CCWWGG | 1 cut(s) | 242 |
| Bst4CI | ACNGT | 1 cut(s) | 315 |
| BstBAI | YACGTR | 1 cut(s) | 49 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 303 |
| BstF5I | GGATG | 1 cut(s) | 141 |
| BstFNI | CGCG | 2 cut(s) | 105, 164 |
| BstHHI | GCGC | 1 cut(s) | 157 |
| BstKTI | GATC | 1 cut(s) | 381 |
| BstMBI | GATC | 1 cut(s) | 378 |
| BstMCI | CGRYCG | 1 cut(s) | 103 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 49, 161, 366 |
| BstSCI | CCNGG | 1 cut(s) | 436 |
| BstSLI | GKGCMC | 1 cut(s) | 313 |
| BstUI | CGCG | 2 cut(s) | 105, 164 |
| BstX2I | RGATCY | 1 cut(s) | 378 |
| BstYI | RGATCY | 1 cut(s) | 378 |
| BsuRI | GGCC | 4 cut(s) | 24, 57, 276, 369 |
| BtgZI | GCGATG | 1 cut(s) | 179 |
| BtsCI | GGATG | 1 cut(s) | 141 |
| BtsI | GCAGTG | 1 cut(s) | 277 |
| BtsIMutI | CAGTG | 2 cut(s) | 277, 311 |
| CfoI | GCGC | 1 cut(s) | 157 |
| Cfr10I | RCCGGY | 2 cut(s) | 20, 98 |
| Cfr13I | GGNCC | 2 cut(s) | 239, 368 |
| Csp6I | GTAC | 2 cut(s) | 108, 302 |
| CviAII | CATG | 2 cut(s) | 53, 340 |
| CviQI | GTAC | 2 cut(s) | 108, 302 |
| DpnI | GATC | 1 cut(s) | 380 |
| DpnII | GATC | 1 cut(s) | 378 |
| EaeI | YGGCCR | 2 cut(s) | 55, 274 |
| Eco130I | CCWWGG | 1 cut(s) | 242 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco47I | GGWCC | 1 cut(s) | 239 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 303 |
| EcoT14I | CCWWGG | 1 cut(s) | 242 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 242 |
| FaeI | CATG | 2 cut(s) | 56, 343 |
| FaiI | YATR | 3 cut(s) | 54, 114, 341 |
| FatI | CATG | 2 cut(s) | 52, 339 |
| FokI | GGATG | 1 cut(s) | 148 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| FspBI | CTAG | 2 cut(s) | 305, 417 |
| GlaI | GCGC | 1 cut(s) | 156 |
| HaeIII | GGCC | 4 cut(s) | 24, 57, 276, 369 |
| HapII | CCGG | 3 cut(s) | 21, 99, 438 |
| HhaI | GCGC | 1 cut(s) | 157 |
| Hin1II | CATG | 2 cut(s) | 56, 343 |
| Hin6I | GCGC | 1 cut(s) | 155 |
| HinP1I | GCGC | 1 cut(s) | 155 |
| HinfI | GANTC | 2 cut(s) | 65, 394 |
| HpaII | CCGG | 3 cut(s) | 21, 99, 438 |
| HphI | GGTGA | 1 cut(s) | 10 |
| Hpy166II | GTNNAC | 1 cut(s) | 311 |
| Hpy188III | TCNNGA | 2 cut(s) | 376, 391 |
| Hpy8I | GTNNAC | 1 cut(s) | 311 |
| Hpy99I | CGWCG | 1 cut(s) | 41 |
| HpyAV | CCTTC | 3 cut(s) | 79, 90, 382 |
| HpyCH4III | ACNGT | 1 cut(s) | 315 |
| HpyCH4IV | ACGT | 1 cut(s) | 48 |
| HpyCH4V | TGCA | 4 cut(s) | 52, 216, 311, 343 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 49, 161, 366 |
| HpySE526I | ACGT | 1 cut(s) | 48 |
| Hsp92II | CATG | 2 cut(s) | 56, 343 |
| HspAI | GCGC | 1 cut(s) | 155 |
| KpnI | GGTACC | 1 cut(s) | 111 |
| Kzo9I | GATC | 1 cut(s) | 378 |
| LmnI | GCTCC | 1 cut(s) | 125 |
| LpnPI | CCDG | 9 cut(s) | 34, 112, 155, 178, 222, 312, 351, 361, 376 |
| MaeI | CTAG | 2 cut(s) | 305, 417 |
| MaeII | ACGT | 1 cut(s) | 48 |
| MalI | GATC | 1 cut(s) | 380 |
| MboI | GATC | 1 cut(s) | 378 |
| MboII | GAAGA | 1 cut(s) | 213 |
| MflI | RGATCY | 1 cut(s) | 378 |
| MhlI | GDGCHC | 2 cut(s) | 45, 313 |
| MlsI | TGGCCA | 1 cut(s) | 57 |
| MluCI | AATT | 2 cut(s) | 59, 74 |
| MluNI | TGGCCA | 1 cut(s) | 57 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 5 cut(s) | 138, 164, 244, 275, 392 |
| Mox20I | TGGCCA | 1 cut(s) | 57 |
| MscI | TGGCCA | 1 cut(s) | 57 |
| Msp20I | TGGCCA | 1 cut(s) | 57 |
| MspI | CCGG | 3 cut(s) | 21, 99, 438 |
| MspR9I | CCNGG | 1 cut(s) | 438 |
| MvnI | CGCG | 2 cut(s) | 105, 164 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 49, 161, 366 |
| NciI | CCSGG | 1 cut(s) | 438 |
| NdeII | GATC | 1 cut(s) | 378 |
| NlaIII | CATG | 2 cut(s) | 56, 343 |
| NlaIV | GGNNCC | 3 cut(s) | 109, 370, 380 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 45, 279 |
| PfeI | GAWTC | 1 cut(s) | 394 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| Ppu21I | YACGTR | 1 cut(s) | 49 |
| PspN4I | GGNNCC | 3 cut(s) | 109, 370, 380 |
| PspPI | GGNCC | 2 cut(s) | 239, 368 |
| PsuI | RGATCY | 1 cut(s) | 378 |
| RsaI | GTAC | 2 cut(s) | 109, 303 |
| RsaNI | GTAC | 2 cut(s) | 108, 302 |
| Sau3AI | GATC | 1 cut(s) | 378 |
| Sau96I | GGNCC | 2 cut(s) | 239, 368 |
| SchI | GAGTC | 1 cut(s) | 59 |
| ScrFI | CCNGG | 1 cut(s) | 438 |
| SduI | GDGCHC | 2 cut(s) | 45, 313 |
| SetI | ASST | 5 cut(s) | 31, 51, 122, 289, 310 |
| SinI | GGWCC | 1 cut(s) | 239 |
| Sse9I | AATT | 2 cut(s) | 59, 74 |
| SsiI | CCGC | 3 cut(s) | 105, 410, 429 |
| SspMI | CTAG | 2 cut(s) | 305, 417 |
| StyD4I | CCNGG | 1 cut(s) | 436 |
| StyI | CCWWGG | 1 cut(s) | 242 |
| TaaI | ACNGT | 1 cut(s) | 315 |
| TaiI | ACGT | 1 cut(s) | 51 |
| TaqI | TCGA | 2 cut(s) | 130, 384 |
| TasI | AATT | 2 cut(s) | 59, 74 |
| TatI | WGTACW | 1 cut(s) | 301 |
| TfiI | GAWTC | 1 cut(s) | 394 |
| TscAI | CASTG | 2 cut(s) | 284, 318 |
| TspDTI | ATGAA | 1 cut(s) | 196 |
| TspRI | CASTG | 2 cut(s) | 284, 318 |
| VneI | GTGCAC | 1 cut(s) | 309 |
| VpaK11BI | GGWCC | 1 cut(s) | 239 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 303 |
| XapI | RAATTY | 1 cut(s) | 74 |
| XspI | CTAG | 2 cut(s) | 305, 417 |