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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1812 |
| AatII | GACGTC | 1 cut(s) | 666 |
| Acc36I | ACCTGC | 4 cut(s) | 371, 1591, 1972, 2312 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 163 |
| AccBSI | CCGCTC | 1 cut(s) | 1086 |
| AccI | GTMKAC | 2 cut(s) | 633, 669 |
| AccIII | TCCGGA | 2 cut(s) | 458, 1306 |
| AclWI | GGATC | 5 cut(s) | 481, 494, 1097, 2073, 2081 |
| AcoI | YGGCCR | 4 cut(s) | 302, 540, 934, 960 |
| AcsI | RAATTY | 2 cut(s) | 581, 1901 |
| AcuI | CTGAAG | 4 cut(s) | 837, 1020, 1722, 1914 |
| AcyI | GRCGYC | 3 cut(s) | 663, 822, 1311 |
| AfaI | GTAC | 5 cut(s) | 993, 1626, 1752, 1869, 1885 |
| AfeI | AGCGCT | 1 cut(s) | 2052 |
| AgsI | TTSAA | 4 cut(s) | 46, 1691, 1910, 2105 |
| AhlI | ACTAGT | 1 cut(s) | 2122 |
| AjnI | CCWGG | 7 cut(s) | 65, 321, 879, 931, 1590, 1768, 1831 |
| AluBI | AGCT | 9 cut(s) | 769, 866, 1010, 1070, 1850, 1921, 1975, 2283, 2332 |
| AluI | AGCT | 9 cut(s) | 769, 866, 1010, 1070, 1850, 1921, 1975, 2283, 2332 |
| Alw21I | GWGCWC | 6 cut(s) | 771, 804, 868, 1353, 1852, 1923 |
| Alw26I | GTCTC | 7 cut(s) | 95, 320, 715, 1110, 1140, 1198, 2223 |
| AlwI | GGATC | 5 cut(s) | 481, 494, 1097, 2073, 2081 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 264 |
| Aor13HI | TCCGGA | 2 cut(s) | 458, 1306 |
| Aor51HI | AGCGCT | 1 cut(s) | 2052 |
| ApaI | GGGCCC | 1 cut(s) | 603 |
| ApeKI | GCWGC | 8 cut(s) | 56, 377, 1061, 1801, 1841, 1967, 2267, 2270 |
| ApoI | RAATTY | 2 cut(s) | 581, 1901 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 731, 763 |
| AspA2I | CCTAGG | 1 cut(s) | 2038 |
| AsuC2I | CCSGG | 4 cut(s) | 61, 151, 161, 249 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 379, 1350, 2054 |
| AsuNHI | GCTAGC | 1 cut(s) | 2279 |
| AvaII | GGWCC | 8 cut(s) | 63, 461, 587, 675, 1015, 1325, 1814, 2094 |
| AvrII | CCTAGG | 1 cut(s) | 2038 |
| AxyI | CCTNAGG | 1 cut(s) | 1320 |
| BaeGI | GKGCMC | 3 cut(s) | 74, 322, 603 |
| BalI | TGGCCA | 1 cut(s) | 304 |
| BamHI | GGATCC | 1 cut(s) | 486 |
| BanI | GGYRCC | 2 cut(s) | 71, 163 |
| BanII | GRGCYC | 9 cut(s) | 603, 652, 771, 868, 1424, 1554, 1852, 1923, 2181 |
| BbsI | GAAGAC | 2 cut(s) | 200, 825 |
| Bbv12I | GWGCWC | 6 cut(s) | 771, 804, 868, 1353, 1852, 1923 |
| BbvCI | CCTCAGC | 2 cut(s) | 1011, 1521 |
| BbvI | GCAGC | 8 cut(s) | 43, 364, 1048, 1813, 1828, 1954, 2254, 2257 |
| BccI | CCATC | 8 cut(s) | 288, 313, 320, 404, 420, 555, 1226, 1858 |
| BceAI | ACGGC | 4 cut(s) | 236, 498, 2172, 2217 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 38, 72, 549, 583, 1436, 1470, 2288, 2322 |
| BciT130I | CCWGG | 7 cut(s) | 67, 323, 881, 933, 1592, 1770, 1833 |
| BciVI | GTATCC | 1 cut(s) | 1084 |
| BclI | TGATCA | 1 cut(s) | 2044 |
| BcnI | CCSGG | 4 cut(s) | 61, 151, 161, 249 |
| BcoDI | GTCTC | 7 cut(s) | 95, 320, 715, 1110, 1140, 1198, 2223 |
| BcuI | ACTAGT | 1 cut(s) | 2122 |
| BfaI | CTAG | 8 cut(s) | 98, 362, 554, 1754, 2039, 2123, 2280, 2291 |
| BfmI | CTRYAG | 4 cut(s) | 378, 1065, 1502, 1799 |
| BfoI | RGCGCY | 3 cut(s) | 87, 2054, 2207 |
| BfuAI | ACCTGC | 4 cut(s) | 371, 1591, 1972, 2312 |
| BfuI | GTATCC | 1 cut(s) | 1084 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2165 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BlnI | CCTAGG | 1 cut(s) | 2038 |
| BlpI | GCTNAGC | 1 cut(s) | 1548 |
| BmcAI | AGTACT | 1 cut(s) | 993 |
| Bme18I | GGWCC | 8 cut(s) | 63, 461, 587, 675, 1015, 1325, 1814, 2094 |
| BmrI | ACTGGG | 1 cut(s) | 984 |
| BmsI | GCATC | 7 cut(s) | 178, 423, 445, 897, 1597, 2033, 2266 |
| BmtI | GCTAGC | 1 cut(s) | 2283 |
| BmuI | ACTGGG | 1 cut(s) | 984 |
| BpiI | GAAGAC | 2 cut(s) | 200, 825 |
| BpmI | CTGGAG | 2 cut(s) | 1644, 1752 |
| Bpu10I | CCTNAGC | 4 cut(s) | 770, 1011, 1521, 1976 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1548 |
| BpuEI | CTTGAG | 3 cut(s) | 894, 1836, 2217 |
| BpuMI | CCSGG | 4 cut(s) | 61, 151, 161, 249 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 399 |
| BsaHI | GRCGYC | 3 cut(s) | 663, 822, 1311 |
| BsaI | GGTCTC | 3 cut(s) | 95, 320, 1140 |
| BsaJI | CCNNGG | 9 cut(s) | 66, 321, 879, 1106, 1590, 1769, 1962, 2038, 2133 |
| BsaWI | WCCGGW | 2 cut(s) | 458, 1306 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 108, 138, 850, 880 |
| Bse118I | RCCGGY | 4 cut(s) | 538, 607, 884, 958 |
| Bse1I | ACTGG | 5 cut(s) | 75, 979, 1143, 1661, 2169 |
| Bse21I | CCTNAGG | 1 cut(s) | 1320 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseAI | TCCGGA | 2 cut(s) | 458, 1306 |
| BseBI | CCWGG | 7 cut(s) | 67, 323, 881, 933, 1592, 1770, 1833 |
| BseCI | ATCGAT | 2 cut(s) | 27, 399 |
| BseDI | CCNNGG | 9 cut(s) | 66, 321, 879, 1106, 1590, 1769, 1962, 2038, 2133 |
| BseGI | GGATG | 4 cut(s) | 305, 436, 1786, 2024 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseMII | CTCAG | 9 cut(s) | 784, 1002, 1311, 1425, 1512, 1539, 1990, 2060, 2234 |
| BseNI | ACTGG | 5 cut(s) | 75, 979, 1143, 1661, 2169 |
| BsePI | GCGCGC | 2 cut(s) | 2237, 2263 |
| BseRI | GAGGAG | 5 cut(s) | 858, 1538, 1701, 1755, 2189 |
| BseSI | GKGCMC | 3 cut(s) | 74, 322, 603 |
| BseX3I | CGGCCG | 2 cut(s) | 540, 960 |
| BseXI | GCAGC | 8 cut(s) | 43, 364, 1048, 1813, 1828, 1954, 2254, 2257 |
| BseYI | CCCAGC | 1 cut(s) | 264 |
| BsgI | GTGCAG | 2 cut(s) | 1277, 1953 |
| Bsh1285I | CGRYCG | 4 cut(s) | 543, 963, 1332, 1962 |
| BshNI | GGYRCC | 2 cut(s) | 71, 163 |
| BshVI | ATCGAT | 2 cut(s) | 27, 399 |
| BsiEI | CGRYCG | 4 cut(s) | 543, 963, 1332, 1962 |
| BsiHKAI | GWGCWC | 6 cut(s) | 771, 804, 868, 1353, 1852, 1923 |
| BslFI | GGGAC | 3 cut(s) | 688, 1499, 1805 |
| BsmAI | GTCTC | 7 cut(s) | 95, 320, 715, 1110, 1140, 1198, 2223 |
| BsmBI | CGTCTC | 1 cut(s) | 1110 |
| BsmFI | GGGAC | 3 cut(s) | 688, 1499, 1805 |
| BsmI | GAATGC | 2 cut(s) | 379, 1300 |
| Bso31I | GGTCTC | 3 cut(s) | 95, 320, 1140 |
| Bsp120I | GGGCCC | 1 cut(s) | 599 |
| Bsp13I | TCCGGA | 2 cut(s) | 458, 1306 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1548 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspCNI | CTCAG | 9 cut(s) | 783, 1003, 1312, 1424, 1513, 1540, 1989, 2061, 2233 |
| BspDI | ATCGAT | 2 cut(s) | 27, 399 |
| BspEI | TCCGGA | 2 cut(s) | 458, 1306 |
| BspMAI | CTGCAG | 2 cut(s) | 382, 1803 |
| BspMI | ACCTGC | 4 cut(s) | 371, 1591, 1972, 2312 |
| BspOI | GCTAGC | 1 cut(s) | 2283 |
| BspPI | GGATC | 5 cut(s) | 481, 494, 1097, 2073, 2081 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 163 |
| BspTNI | GGTCTC | 3 cut(s) | 95, 320, 1140 |
| BsrBI | CCGCTC | 1 cut(s) | 1086 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BsrFI | RCCGGY | 4 cut(s) | 538, 607, 884, 958 |
| BsrI | ACTGG | 5 cut(s) | 75, 979, 1143, 1661, 2169 |
| BssAI | RCCGGY | 4 cut(s) | 538, 607, 884, 958 |
| BssECI | CCNNGG | 9 cut(s) | 66, 321, 879, 1106, 1590, 1769, 1962, 2038, 2133 |
| BssHII | GCGCGC | 2 cut(s) | 2237, 2263 |
| BssNI | GRCGYC | 3 cut(s) | 663, 822, 1311 |
| BssT1I | CCWWGG | 3 cut(s) | 1106, 2038, 2133 |
| Bst2UI | CCWGG | 7 cut(s) | 67, 323, 881, 933, 1592, 1770, 1833 |
| Bst4CI | ACNGT | 5 cut(s) | 950, 1054, 1490, 2152, 2248 |
| Bst6I | CTCTTC | 3 cut(s) | 33, 752, 1284 |
| BstACI | GRCGYC | 3 cut(s) | 663, 822, 1311 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 995 |
| BstDSI | CCRYGG | 1 cut(s) | 1962 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 912, 1110, 1662 |
| BstF5I | GGATG | 4 cut(s) | 305, 436, 1786, 2024 |
| BstH2I | RGCGCY | 3 cut(s) | 87, 2054, 2207 |
| BstMAI | GTCTC | 7 cut(s) | 95, 320, 715, 1110, 1140, 1198, 2223 |
| BstMCI | CGRYCG | 4 cut(s) | 543, 963, 1332, 1962 |
| BstNI | CCWGG | 7 cut(s) | 67, 323, 881, 933, 1592, 1770, 1833 |
| BstSFI | CTRYAG | 4 cut(s) | 378, 1065, 1502, 1799 |
| BstSLI | GKGCMC | 3 cut(s) | 74, 322, 603 |
| BstV1I | GCAGC | 8 cut(s) | 43, 364, 1048, 1813, 1828, 1954, 2254, 2257 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 825 |
| BstX2I | RGATCY | 4 cut(s) | 358, 486, 2065, 2073 |
| BstYI | RGATCY | 4 cut(s) | 358, 486, 2065, 2073 |
| BstZI | CGGCCG | 2 cut(s) | 540, 960 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 399 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1320 |
| BsuI | GTATCC | 1 cut(s) | 1084 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 399 |
| BtgI | CCRYGG | 1 cut(s) | 1962 |
| BtgZI | GCGATG | 2 cut(s) | 1681, 2228 |
| BtsCI | GGATG | 4 cut(s) | 305, 436, 1786, 2024 |
| BtsIMutI | CAGTG | 4 cut(s) | 322, 955, 1227, 1890 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 4 cut(s) | 371, 1591, 1972, 2312 |
| CaiI | CAGNNNCTG | 1 cut(s) | 264 |
| Cfr10I | RCCGGY | 4 cut(s) | 538, 607, 884, 958 |
| Cfr42I | CCGCGG | 1 cut(s) | 1965 |
| ClaI | ATCGAT | 2 cut(s) | 27, 399 |
| CseI | GACGC | 4 cut(s) | 830, 917, 1319, 1344 |
| Csp6I | GTAC | 5 cut(s) | 992, 1625, 1751, 1868, 1884 |
| CviAII | CATG | 2 cut(s) | 199, 2318 |
| CviQI | GTAC | 5 cut(s) | 992, 1625, 1751, 1868, 1884 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1812 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1812 |
| EaeI | YGGCCR | 4 cut(s) | 302, 540, 934, 960 |
| EagI | CGGCCG | 2 cut(s) | 540, 960 |
| Eam1104I | CTCTTC | 3 cut(s) | 33, 752, 1284 |
| EarI | CTCTTC | 3 cut(s) | 33, 752, 1284 |
| EciI | GGCGGA | 1 cut(s) | 500 |
| Ecl136II | GAGCTC | 4 cut(s) | 769, 866, 1850, 1921 |
| EclXI | CGGCCG | 2 cut(s) | 540, 960 |
| Eco130I | CCWWGG | 3 cut(s) | 1106, 2038, 2133 |
| Eco147I | AGGCCT | 1 cut(s) | 832 |
| Eco24I | GRGCYC | 9 cut(s) | 603, 652, 771, 868, 1424, 1554, 1852, 1923, 2181 |
| Eco31I | GGTCTC | 3 cut(s) | 95, 320, 1140 |
| Eco32I | GATATC | 1 cut(s) | 523 |
| Eco47I | GGWCC | 8 cut(s) | 63, 461, 587, 675, 1015, 1325, 1814, 2094 |
| Eco47III | AGCGCT | 1 cut(s) | 2052 |
| Eco52I | CGGCCG | 2 cut(s) | 540, 960 |
| Eco53kI | GAGCTC | 4 cut(s) | 769, 866, 1850, 1921 |
| Eco57I | CTGAAG | 4 cut(s) | 837, 1020, 1722, 1914 |
| Eco81I | CCTNAGG | 1 cut(s) | 1320 |
| EcoICRI | GAGCTC | 4 cut(s) | 769, 866, 1850, 1921 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 912, 1110, 1662 |
| EcoO109I | RGGNCCY | 4 cut(s) | 600, 1015, 1667, 1814 |
| EcoRII | CCWGG | 7 cut(s) | 65, 321, 879, 931, 1590, 1768, 1831 |
| EcoRV | GATATC | 1 cut(s) | 523 |
| EcoT14I | CCWWGG | 3 cut(s) | 1106, 2038, 2133 |
| EcoT22I | ATGCAT | 1 cut(s) | 438 |
| EcoT38I | GRGCYC | 9 cut(s) | 603, 652, 771, 868, 1424, 1554, 1852, 1923, 2181 |
| ErhI | CCWWGG | 3 cut(s) | 1106, 2038, 2133 |
| Esp3I | CGTCTC | 1 cut(s) | 1110 |
| FaeI | CATG | 2 cut(s) | 202, 2321 |
| FaqI | GGGAC | 3 cut(s) | 688, 1499, 1805 |
| FatI | CATG | 2 cut(s) | 198, 2317 |
| FauI | CCCGC | 8 cut(s) | 342, 534, 543, 1408, 1525, 1561, 1564, 2036 |
| FauNDI | CATATG | 1 cut(s) | 1915 |
| FbaI | TGATCA | 1 cut(s) | 2044 |
| FblI | GTMKAC | 2 cut(s) | 633, 669 |
| FokI | GGATG | 4 cut(s) | 292, 423, 1793, 2011 |
| FriOI | GRGCYC | 9 cut(s) | 603, 652, 771, 868, 1424, 1554, 1852, 1923, 2181 |
| FspBI | CTAG | 8 cut(s) | 98, 362, 554, 1754, 2039, 2123, 2280, 2291 |
| GsaI | CCCAGC | 1 cut(s) | 268 |
| GsuI | CTGGAG | 2 cut(s) | 1644, 1752 |
| HaeII | RGCGCY | 3 cut(s) | 87, 2054, 2207 |
| HgaI | GACGC | 4 cut(s) | 830, 917, 1319, 1344 |
| Hin1I | GRCGYC | 3 cut(s) | 663, 822, 1311 |
| Hin1II | CATG | 2 cut(s) | 202, 2321 |
| HincII | GTYRAC | 2 cut(s) | 634, 718 |
| HindII | GTYRAC | 2 cut(s) | 634, 718 |
| HindIII | AAGCTT | 1 cut(s) | 2330 |
| HinfI | GANTC | 5 cut(s) | 244, 472, 727, 1806, 2033 |
| HphI | GGTGA | 4 cut(s) | 104, 379, 1350, 2054 |
| Hpy166II | GTNNAC | 4 cut(s) | 634, 670, 718, 902 |
| Hpy8I | GTNNAC | 4 cut(s) | 634, 670, 718, 902 |
| Hpy99I | CGWCG | 6 cut(s) | 222, 433, 668, 1043, 1224, 1283 |
| HpyCH4III | ACNGT | 5 cut(s) | 950, 1054, 1490, 2152, 2248 |
| HpyCH4IV | ACGT | 3 cut(s) | 663, 1512, 1882 |
| HpyCH4V | TGCA | 9 cut(s) | 380, 436, 1258, 1622, 1801, 1927, 1970, 2009, 2321 |
| HpySE526I | ACGT | 3 cut(s) | 663, 1512, 1882 |
| Hsp92I | GRCGYC | 3 cut(s) | 663, 822, 1311 |
| Hsp92II | CATG | 2 cut(s) | 202, 2321 |
| Kpn2I | TCCGGA | 2 cut(s) | 458, 1306 |
| KroI | GCCGGC | 3 cut(s) | 538, 884, 958 |
| KroNI | GCCGGC | 3 cut(s) | 540, 886, 960 |
| Ksp22I | TGATCA | 1 cut(s) | 2044 |
| KspI | CCGCGG | 1 cut(s) | 1965 |
| LmnI | GCTCC | 5 cut(s) | 10, 871, 1768, 1926, 2176 |
| Lsp1109I | GCAGC | 8 cut(s) | 43, 364, 1048, 1813, 1828, 1954, 2254, 2257 |
| LweI | GCATC | 7 cut(s) | 178, 423, 445, 897, 1597, 2033, 2266 |
| MaeI | CTAG | 8 cut(s) | 98, 362, 554, 1754, 2039, 2123, 2280, 2291 |
| MaeII | ACGT | 3 cut(s) | 663, 1512, 1882 |
| MaeIII | GTNAC | 4 cut(s) | 1356, 1508, 2146, 2152 |
| MbiI | CCGCTC | 1 cut(s) | 1086 |
| MfeI | CAATTG | 1 cut(s) | 548 |
| MflI | RGATCY | 4 cut(s) | 358, 486, 2065, 2073 |
| MlsI | TGGCCA | 1 cut(s) | 304 |
| MluCI | AATT | 6 cut(s) | 298, 548, 581, 1167, 1901, 2141 |
| MluNI | TGGCCA | 1 cut(s) | 304 |
| MlyI | GAGTC | 4 cut(s) | 238, 721, 1800, 2027 |
| MmeI | TCCRAC | 2 cut(s) | 162, 1302 |
| Mox20I | TGGCCA | 1 cut(s) | 304 |
| Mph1103I | ATGCAT | 1 cut(s) | 438 |
| MroI | TCCGGA | 2 cut(s) | 458, 1306 |
| MroNI | GCCGGC | 3 cut(s) | 538, 884, 958 |
| MscI | TGGCCA | 1 cut(s) | 304 |
| MseI | TTAA | 2 cut(s) | 1947, 2198 |
| MslI | CAYNNNNRTG | 2 cut(s) | 197, 797 |
| Msp20I | TGGCCA | 1 cut(s) | 304 |
| MspA1I | CMGCKG | 7 cut(s) | 261, 965, 1010, 1520, 1556, 1682, 1964 |
| MunI | CAATTG | 1 cut(s) | 548 |
| Mva1269I | GAATGC | 2 cut(s) | 379, 1300 |
| MvaI | CCWGG | 7 cut(s) | 67, 323, 881, 933, 1592, 1770, 1833 |
| NaeI | GCCGGC | 3 cut(s) | 540, 886, 960 |
| NciI | CCSGG | 4 cut(s) | 61, 151, 161, 249 |
| NdeI | CATATG | 1 cut(s) | 1915 |
| NgoMIV | GCCGGC | 3 cut(s) | 538, 884, 958 |
| NheI | GCTAGC | 1 cut(s) | 2279 |
| NlaIII | CATG | 2 cut(s) | 202, 2321 |
| NmuCI | GTSAC | 3 cut(s) | 1356, 2146, 2152 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| NsiI | ATGCAT | 1 cut(s) | 438 |
| PauI | GCGCGC | 2 cut(s) | 2237, 2263 |
| PceI | AGGCCT | 1 cut(s) | 832 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 630, 639, 1879 |
| PctI | GAATGC | 2 cut(s) | 379, 1300 |
| PdiI | GCCGGC | 3 cut(s) | 540, 886, 960 |
| PfeI | GAWTC | 1 cut(s) | 472 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| Ple19I | CGATCG | 1 cut(s) | 1332 |
| PleI | GAGTC | 4 cut(s) | 238, 721, 1800, 2027 |
| PpsI | GAGTC | 4 cut(s) | 238, 721, 1800, 2027 |
| PpuMI | RGGWCCY | 2 cut(s) | 1015, 1814 |
| Psp124BI | GAGCTC | 4 cut(s) | 771, 868, 1852, 1923 |
| Psp5II | RGGWCCY | 2 cut(s) | 1015, 1814 |
| Psp6I | CCWGG | 7 cut(s) | 65, 321, 879, 931, 1590, 1768, 1831 |
| PspFI | CCCAGC | 1 cut(s) | 264 |
| PspGI | CCWGG | 7 cut(s) | 65, 321, 879, 931, 1590, 1768, 1831 |
| PspOMI | GGGCCC | 1 cut(s) | 599 |
| PspPPI | RGGWCCY | 2 cut(s) | 1015, 1814 |
| PstI | CTGCAG | 2 cut(s) | 382, 1803 |
| PstNI | CAGNNNCTG | 1 cut(s) | 264 |
| PsuI | RGATCY | 4 cut(s) | 358, 486, 2065, 2073 |
| PteI | GCGCGC | 2 cut(s) | 2237, 2263 |
| PvuI | CGATCG | 1 cut(s) | 1332 |
| PvuII | CAGCTG | 1 cut(s) | 1010 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 5 cut(s) | 993, 1626, 1752, 1869, 1885 |
| RsaNI | GTAC | 5 cut(s) | 992, 1625, 1751, 1868, 1884 |
| RseI | CAYNNNNRTG | 2 cut(s) | 197, 797 |
| SacI | GAGCTC | 4 cut(s) | 771, 868, 1852, 1923 |
| SacII | CCGCGG | 1 cut(s) | 1965 |
| SalI | GTCGAC | 1 cut(s) | 632 |
| SaqAI | TTAA | 2 cut(s) | 1947, 2198 |
| ScaI | AGTACT | 1 cut(s) | 993 |
| SchI | GAGTC | 4 cut(s) | 238, 721, 1800, 2027 |
| SfaNI | GCATC | 7 cut(s) | 178, 423, 445, 897, 1597, 2033, 2266 |
| SfcI | CTRYAG | 4 cut(s) | 378, 1065, 1502, 1799 |
| Sfr303I | CCGCGG | 1 cut(s) | 1965 |
| SgrBI | CCGCGG | 1 cut(s) | 1965 |
| SinI | GGWCC | 8 cut(s) | 63, 461, 587, 675, 1015, 1325, 1814, 2094 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 197, 797 |
| SmlI | CTYRAG | 3 cut(s) | 909, 1851, 2232 |
| SmoI | CTYRAG | 3 cut(s) | 909, 1851, 2232 |
| SpeI | ACTAGT | 1 cut(s) | 2122 |
| Sse9I | AATT | 6 cut(s) | 298, 548, 581, 1167, 1901, 2141 |
| SseBI | AGGCCT | 1 cut(s) | 832 |
| SspMI | CTAG | 8 cut(s) | 98, 362, 554, 1754, 2039, 2123, 2280, 2291 |
| SstI | GAGCTC | 4 cut(s) | 771, 868, 1852, 1923 |
| StuI | AGGCCT | 1 cut(s) | 832 |
| StyI | CCWWGG | 3 cut(s) | 1106, 2038, 2133 |
| TaaI | ACNGT | 5 cut(s) | 950, 1054, 1490, 2152, 2248 |
| TaiI | ACGT | 3 cut(s) | 666, 1515, 1885 |
| TaqII | GACCGA | 3 cut(s) | 575, 692, 1149 |
| TasI | AATT | 6 cut(s) | 298, 548, 581, 1167, 1901, 2141 |
| TatI | WGTACW | 1 cut(s) | 991 |
| TfiI | GAWTC | 1 cut(s) | 472 |
| Tru1I | TTAA | 2 cut(s) | 1947, 2198 |
| Tru9I | TTAA | 2 cut(s) | 1947, 2198 |
| TscAI | CASTG | 4 cut(s) | 322, 955, 1234, 1897 |
| TseFI | GTSAC | 3 cut(s) | 1356, 2146, 2152 |
| TseI | GCWGC | 8 cut(s) | 56, 377, 1061, 1801, 1841, 1967, 2267, 2270 |
| Tsp45I | GTSAC | 3 cut(s) | 1356, 2146, 2152 |
| TspDTI | ATGAA | 5 cut(s) | 83, 1463, 1575, 1797, 1914 |
| TspGWI | ACGGA | 2 cut(s) | 887, 1301 |
| TspRI | CASTG | 4 cut(s) | 322, 955, 1234, 1897 |
| VpaK11BI | GGWCC | 8 cut(s) | 63, 461, 587, 675, 1015, 1325, 1814, 2094 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 912, 1110, 1662 |
| XapI | RAATTY | 2 cut(s) | 581, 1901 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XmaJI | CCTAGG | 1 cut(s) | 2038 |
| XmiI | GTMKAC | 2 cut(s) | 633, 669 |
| XspI | CTAG | 8 cut(s) | 98, 362, 554, 1754, 2039, 2123, 2280, 2291 |
| ZraI | GACGTC | 1 cut(s) | 664 |
| ZrmI | AGTACT | 1 cut(s) | 993 |
| Zsp2I | ATGCAT | 1 cut(s) | 438 |