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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 435 |
| Acc36I | ACCTGC | 1 cut(s) | 70 |
| Acc65I | GGTACC | 1 cut(s) | 7 |
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccBSI | CCGCTC | 2 cut(s) | 406, 699 |
| AccI | GTMKAC | 1 cut(s) | 1014 |
| AccII | CGCG | 8 cut(s) | 213, 253, 473, 495, 636, 734, 827, 908 |
| AclWI | GGATC | 1 cut(s) | 14 |
| AcuI | CTGAAG | 1 cut(s) | 99 |
| AfaI | GTAC | 2 cut(s) | 9, 808 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 83, 223, 462, 463, 652, 988 |
| AflIII | ACRYGT | 2 cut(s) | 732, 825 |
| AgsI | TTSAA | 8 cut(s) | 530, 563, 605, 713, 741, 772, 803, 813 |
| AjnI | CCWGG | 4 cut(s) | 166, 232, 440, 1052 |
| AluBI | AGCT | 5 cut(s) | 314, 385, 449, 559, 658 |
| AluI | AGCT | 5 cut(s) | 314, 385, 449, 559, 658 |
| Alw21I | GWGCWC | 1 cut(s) | 316 |
| Alw26I | GTCTC | 2 cut(s) | 618, 876 |
| AlwI | GGATC | 1 cut(s) | 14 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 923 |
| ApeKI | GCWGC | 5 cut(s) | 152, 155, 262, 641, 665 |
| AseI | ATTAAT | 1 cut(s) | 411 |
| Asp718I | GGTACC | 1 cut(s) | 7 |
| AspLEI | GCGC | 3 cut(s) | 253, 436, 475 |
| AspS9I | GGNCC | 8 cut(s) | 121, 170, 226, 454, 466, 513, 553, 1024 |
| AsuC2I | CCSGG | 2 cut(s) | 464, 951 |
| AsuHPI | GGTGA | 5 cut(s) | 50, 61, 106, 361, 559 |
| AsuNHI | GCTAGC | 1 cut(s) | 658 |
| AvaII | GGWCC | 1 cut(s) | 170 |
| AxyI | CCTNAGG | 1 cut(s) | 138 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BanII | GRGCYC | 2 cut(s) | 281, 316 |
| BauI | CACGAG | 1 cut(s) | 341 |
| BbsI | GAAGAC | 1 cut(s) | 720 |
| Bbv12I | GWGCWC | 1 cut(s) | 316 |
| BbvI | GCAGC | 5 cut(s) | 139, 142, 249, 653, 677 |
| BccI | CCATC | 6 cut(s) | 251, 322, 359, 524, 788, 828 |
| BceAI | ACGGC | 1 cut(s) | 567 |
| BciT130I | CCWGG | 4 cut(s) | 168, 234, 442, 1054 |
| BcnI | CCSGG | 2 cut(s) | 464, 951 |
| BcoDI | GTCTC | 2 cut(s) | 618, 876 |
| BfaI | CTAG | 5 cut(s) | 593, 659, 675, 764, 1035 |
| BfmI | CTRYAG | 1 cut(s) | 389 |
| BfuAI | ACCTGC | 1 cut(s) | 70 |
| BisI | GCNGC | 9 cut(s) | 153, 156, 159, 263, 597, 642, 663, 666, 909 |
| BlsI | GCNGC | 9 cut(s) | 154, 157, 160, 264, 598, 643, 664, 667, 910 |
| BmcAI | AGTACT | 1 cut(s) | 808 |
| Bme1390I | CCNGG | 6 cut(s) | 168, 234, 442, 464, 951, 1054 |
| Bme18I | GGWCC | 1 cut(s) | 170 |
| BmgT120I | GGNCC | 8 cut(s) | 121, 170, 226, 454, 466, 513, 553, 1024 |
| BmiI | GGNNCC | 7 cut(s) | 9, 60, 123, 228, 467, 573, 1025 |
| BmrFI | CCNGG | 6 cut(s) | 168, 234, 442, 464, 951, 1054 |
| BmsI | GCATC | 2 cut(s) | 475, 661 |
| BmtI | GCTAGC | 1 cut(s) | 662 |
| BpiI | GAAGAC | 1 cut(s) | 720 |
| BpmI | CTGGAG | 1 cut(s) | 216 |
| Bpu10I | CCTNAGC | 5 cut(s) | 180, 275, 315, 402, 450 |
| BpuEI | CTTGAG | 1 cut(s) | 612 |
| BpuMI | CCSGG | 2 cut(s) | 464, 951 |
| BsaJI | CCNNGG | 3 cut(s) | 463, 1008, 1052 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 78, 108 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 83, 223, 462, 463, 652, 988 |
| Bse1I | ACTGG | 1 cut(s) | 32 |
| Bse21I | CCTNAGG | 1 cut(s) | 138 |
| Bse3DI | GCAATG | 1 cut(s) | 173 |
| BseBI | CCWGG | 4 cut(s) | 168, 234, 442, 1054 |
| BseDI | CCNNGG | 3 cut(s) | 463, 1008, 1052 |
| BseGI | GGATG | 3 cut(s) | 262, 516, 997 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 83, 223, 462, 463, 652, 988 |
| BseMI | GCAATG | 1 cut(s) | 173 |
| BseMII | CTCAG | 9 cut(s) | 152, 171, 266, 329, 348, 393, 464, 887, 915 |
| BseNI | ACTGG | 1 cut(s) | 32 |
| BseXI | GCAGC | 5 cut(s) | 139, 142, 249, 653, 677 |
| BseYI | CCCAGC | 1 cut(s) | 555 |
| Bsh1236I | CGCG | 8 cut(s) | 213, 253, 473, 495, 636, 734, 827, 908 |
| Bsh1285I | CGRYCG | 1 cut(s) | 426 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BsiEI | CGRYCG | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 316 |
| BsiSI | CCGG | 3 cut(s) | 113, 463, 950 |
| BslFI | GGGAC | 1 cut(s) | 920 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 83, 223, 462, 463, 652, 988 |
| BsmAI | GTCTC | 2 cut(s) | 618, 876 |
| BsmFI | GGGAC | 1 cut(s) | 920 |
| BsmI | GAATGC | 2 cut(s) | 103, 767 |
| Bsp1286I | GDGCHC | 2 cut(s) | 281, 316 |
| Bsp143I | GATC | 2 cut(s) | 19, 508 |
| Bsp68I | TCGCGA | 1 cut(s) | 495 |
| BspCNI | CTCAG | 9 cut(s) | 151, 172, 267, 328, 349, 394, 463, 886, 916 |
| BspFNI | CGCG | 8 cut(s) | 213, 253, 473, 495, 636, 734, 827, 908 |
| BspLI | GGNNCC | 7 cut(s) | 9, 60, 123, 228, 467, 573, 1025 |
| BspMI | ACCTGC | 1 cut(s) | 70 |
| BspOI | GCTAGC | 1 cut(s) | 662 |
| BspPI | GGATC | 1 cut(s) | 14 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BsrBI | CCGCTC | 2 cut(s) | 406, 699 |
| BsrDI | GCAATG | 1 cut(s) | 173 |
| BsrI | ACTGG | 1 cut(s) | 32 |
| BssECI | CCNNGG | 3 cut(s) | 463, 1008, 1052 |
| BssMI | GATC | 2 cut(s) | 19, 508 |
| BssSI | CACGAG | 1 cut(s) | 341 |
| Bst2BI | CACGAG | 1 cut(s) | 341 |
| Bst2UI | CCWGG | 4 cut(s) | 168, 234, 442, 1054 |
| Bst4CI | ACNGT | 2 cut(s) | 427, 998 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 5 cut(s) | 420, 438, 447, 634, 660 |
| BstDSI | CCRYGG | 1 cut(s) | 1008 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 81 |
| BstF5I | GGATG | 3 cut(s) | 262, 516, 997 |
| BstFNI | CGCG | 8 cut(s) | 213, 253, 473, 495, 636, 734, 827, 908 |
| BstHHI | GCGC | 3 cut(s) | 253, 436, 475 |
| BstKTI | GATC | 2 cut(s) | 22, 511 |
| BstMAI | GTCTC | 2 cut(s) | 618, 876 |
| BstMBI | GATC | 2 cut(s) | 19, 508 |
| BstMCI | CGRYCG | 1 cut(s) | 426 |
| BstNI | CCWGG | 4 cut(s) | 168, 234, 442, 1054 |
| BstSCI | CCNGG | 6 cut(s) | 166, 232, 440, 462, 949, 1052 |
| BstSFI | CTRYAG | 1 cut(s) | 389 |
| BstUI | CGCG | 8 cut(s) | 213, 253, 473, 495, 636, 734, 827, 908 |
| BstV1I | GCAGC | 5 cut(s) | 139, 142, 249, 653, 677 |
| BstV2I | GAAGAC | 1 cut(s) | 720 |
| Bsu36I | CCTNAGG | 1 cut(s) | 138 |
| BtgI | CCRYGG | 1 cut(s) | 1008 |
| BtsCI | GGATG | 3 cut(s) | 262, 516, 997 |
| BtsIMutI | CAGTG | 1 cut(s) | 354 |
| BtuMI | TCGCGA | 1 cut(s) | 495 |
| BveI | ACCTGC | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 5 cut(s) | 420, 438, 447, 634, 660 |
| CaiI | CAGNNNCTG | 1 cut(s) | 923 |
| CfoI | GCGC | 3 cut(s) | 253, 436, 475 |
| Cfr13I | GGNCC | 8 cut(s) | 121, 170, 226, 454, 466, 513, 553, 1024 |
| CseI | GACGC | 1 cut(s) | 202 |
| Csp6I | GTAC | 2 cut(s) | 8, 807 |
| CviAII | CATG | 2 cut(s) | 46, 71 |
| CviQI | GTAC | 2 cut(s) | 8, 807 |
| DpnI | GATC | 2 cut(s) | 21, 510 |
| DpnII | GATC | 2 cut(s) | 19, 508 |
| Ecl136II | GAGCTC | 1 cut(s) | 314 |
| Eco24I | GRGCYC | 2 cut(s) | 281, 316 |
| Eco47I | GGWCC | 1 cut(s) | 170 |
| Eco53kI | GAGCTC | 1 cut(s) | 314 |
| Eco57I | CTGAAG | 1 cut(s) | 99 |
| Eco81I | CCTNAGG | 1 cut(s) | 138 |
| EcoICRI | GAGCTC | 1 cut(s) | 314 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 81 |
| EcoO109I | RGGNCCY | 1 cut(s) | 466 |
| EcoRII | CCWGG | 4 cut(s) | 166, 232, 440, 1052 |
| EcoT38I | GRGCYC | 2 cut(s) | 281, 316 |
| FaeI | CATG | 2 cut(s) | 49, 74 |
| FaiI | YATR | 8 cut(s) | 47, 72, 131, 242, 379, 381, 684, 847 |
| FaqI | GGGAC | 1 cut(s) | 920 |
| FatI | CATG | 2 cut(s) | 45, 70 |
| FauI | CCCGC | 4 cut(s) | 31, 157, 246, 641 |
| FblI | GTMKAC | 1 cut(s) | 1014 |
| Fnu4HI | GCNGC | 9 cut(s) | 153, 156, 159, 263, 597, 642, 663, 666, 909 |
| FokI | GGATG | 3 cut(s) | 269, 503, 1004 |
| FriOI | GRGCYC | 2 cut(s) | 281, 316 |
| Fsp4HI | GCNGC | 9 cut(s) | 153, 156, 159, 263, 597, 642, 663, 666, 909 |
| FspBI | CTAG | 5 cut(s) | 593, 659, 675, 764, 1035 |
| FspI | TGCGCA | 1 cut(s) | 435 |
| GlaI | GCGC | 3 cut(s) | 252, 435, 474 |
| GluI | GCNGC | 9 cut(s) | 153, 156, 159, 263, 597, 642, 663, 666, 909 |
| GsaI | CCCAGC | 1 cut(s) | 559 |
| GsuI | CTGGAG | 1 cut(s) | 216 |
| HapII | CCGG | 3 cut(s) | 113, 463, 950 |
| HgaI | GACGC | 1 cut(s) | 202 |
| HhaI | GCGC | 3 cut(s) | 253, 436, 475 |
| Hin1II | CATG | 2 cut(s) | 49, 74 |
| Hin6I | GCGC | 3 cut(s) | 251, 434, 473 |
| HinP1I | GCGC | 3 cut(s) | 251, 434, 473 |
| HinfI | GANTC | 6 cut(s) | 52, 270, 394, 760, 851, 920 |
| HpaII | CCGG | 3 cut(s) | 113, 463, 950 |
| HphI | GGTGA | 5 cut(s) | 50, 61, 106, 361, 559 |
| Hpy166II | GTNNAC | 2 cut(s) | 369, 1015 |
| Hpy188I | TCNGA | 3 cut(s) | 691, 757, 925 |
| Hpy188III | TCNNGA | 9 cut(s) | 56, 77, 140, 192, 274, 317, 401, 494, 855 |
| Hpy8I | GTNNAC | 2 cut(s) | 369, 1015 |
| HpyAV | CCTTC | 5 cut(s) | 35, 83, 198, 949, 971 |
| HpyCH4III | ACNGT | 2 cut(s) | 427, 998 |
| HpyCH4V | TGCA | 1 cut(s) | 265 |
| Hsp92II | CATG | 2 cut(s) | 49, 74 |
| HspAI | GCGC | 3 cut(s) | 251, 434, 473 |
| KpnI | GGTACC | 1 cut(s) | 11 |
| Kzo9I | GATC | 2 cut(s) | 19, 508 |
| LmnI | GCTCC | 3 cut(s) | 79, 655, 904 |
| Lsp1109I | GCAGC | 5 cut(s) | 139, 142, 249, 653, 677 |
| LweI | GCATC | 2 cut(s) | 475, 661 |
| MaeI | CTAG | 5 cut(s) | 593, 659, 675, 764, 1035 |
| MaeIII | GTNAC | 1 cut(s) | 547 |
| MalI | GATC | 2 cut(s) | 21, 510 |
| MbiI | CCGCTC | 2 cut(s) | 406, 699 |
| MboI | GATC | 2 cut(s) | 19, 508 |
| MboII | GAAGA | 6 cut(s) | 389, 725, 739, 897, 993, 996 |
| MhlI | GDGCHC | 2 cut(s) | 281, 316 |
| MluCI | AATT | 5 cut(s) | 429, 685, 692, 741, 772 |
| MluI | ACGCGT | 2 cut(s) | 732, 825 |
| MlyI | GAGTC | 1 cut(s) | 264 |
| MseI | TTAA | 2 cut(s) | 411, 878 |
| MspA1I | CMGCKG | 2 cut(s) | 26, 152 |
| MspI | CCGG | 3 cut(s) | 113, 463, 950 |
| MspR9I | CCNGG | 6 cut(s) | 168, 234, 442, 464, 951, 1054 |
| Mva1269I | GAATGC | 2 cut(s) | 103, 767 |
| MvaI | CCWGG | 4 cut(s) | 168, 234, 442, 1054 |
| MvnI | CGCG | 8 cut(s) | 213, 253, 473, 495, 636, 734, 827, 908 |
| NciI | CCSGG | 2 cut(s) | 464, 951 |
| NdeII | GATC | 2 cut(s) | 19, 508 |
| NheI | GCTAGC | 1 cut(s) | 658 |
| NlaIII | CATG | 2 cut(s) | 49, 74 |
| NlaIV | GGNNCC | 7 cut(s) | 9, 60, 123, 228, 467, 573, 1025 |
| NmeAIII | GCCGAG | 1 cut(s) | 388 |
| NmuCI | GTSAC | 1 cut(s) | 547 |
| NruI | TCGCGA | 1 cut(s) | 495 |
| NsbI | TGCGCA | 1 cut(s) | 435 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 343, 939 |
| PctI | GAATGC | 2 cut(s) | 103, 767 |
| PfeI | GAWTC | 5 cut(s) | 52, 394, 760, 851, 920 |
| PfoI | TCCNGGA | 1 cut(s) | 232 |
| PkrI | GCNGC | 9 cut(s) | 154, 157, 160, 264, 598, 643, 664, 667, 910 |
| PleI | GAGTC | 1 cut(s) | 264 |
| PpsI | GAGTC | 1 cut(s) | 264 |
| PshBI | ATTAAT | 1 cut(s) | 411 |
| Psp124BI | GAGCTC | 1 cut(s) | 316 |
| Psp6I | CCWGG | 4 cut(s) | 166, 232, 440, 1052 |
| PspFI | CCCAGC | 1 cut(s) | 555 |
| PspGI | CCWGG | 4 cut(s) | 166, 232, 440, 1052 |
| PspN4I | GGNNCC | 7 cut(s) | 9, 60, 123, 228, 467, 573, 1025 |
| PspPI | GGNCC | 8 cut(s) | 121, 170, 226, 454, 466, 513, 553, 1024 |
| PstNI | CAGNNNCTG | 1 cut(s) | 923 |
| RruI | TCGCGA | 1 cut(s) | 495 |
| RsaI | GTAC | 2 cut(s) | 9, 808 |
| RsaNI | GTAC | 2 cut(s) | 8, 807 |
| SacI | GAGCTC | 1 cut(s) | 316 |
| SaqAI | TTAA | 2 cut(s) | 411, 878 |
| SatI | GCNGC | 9 cut(s) | 153, 156, 159, 263, 597, 642, 663, 666, 909 |
| Sau3AI | GATC | 2 cut(s) | 19, 508 |
| Sau96I | GGNCC | 8 cut(s) | 121, 170, 226, 454, 466, 513, 553, 1024 |
| ScaI | AGTACT | 1 cut(s) | 808 |
| SchI | GAGTC | 1 cut(s) | 264 |
| ScrFI | CCNGG | 6 cut(s) | 168, 234, 442, 464, 951, 1054 |
| SduI | GDGCHC | 2 cut(s) | 281, 316 |
| SfaNI | GCATC | 2 cut(s) | 475, 661 |
| SfcI | CTRYAG | 1 cut(s) | 389 |
| SinI | GGWCC | 1 cut(s) | 170 |
| SmlI | CTYRAG | 1 cut(s) | 627 |
| SmoI | CTYRAG | 1 cut(s) | 627 |
| Sse9I | AATT | 5 cut(s) | 429, 685, 692, 741, 772 |
| SspMI | CTAG | 5 cut(s) | 593, 659, 675, 764, 1035 |
| SstI | GAGCTC | 1 cut(s) | 316 |
| StyD4I | CCNGG | 6 cut(s) | 166, 232, 440, 462, 949, 1052 |
| TaaI | ACNGT | 2 cut(s) | 427, 998 |
| TaqI | TCGA | 3 cut(s) | 219, 522, 942 |
| TasI | AATT | 5 cut(s) | 429, 685, 692, 741, 772 |
| TatI | WGTACW | 1 cut(s) | 806 |
| TauI | GCSGC | 4 cut(s) | 161, 599, 665, 911 |
| TfiI | GAWTC | 5 cut(s) | 52, 394, 760, 851, 920 |
| Tru1I | TTAA | 2 cut(s) | 411, 878 |
| Tru9I | TTAA | 2 cut(s) | 411, 878 |
| TscAI | CASTG | 1 cut(s) | 361 |
| TseFI | GTSAC | 1 cut(s) | 547 |
| TseI | GCWGC | 5 cut(s) | 152, 155, 262, 641, 665 |
| Tsp45I | GTSAC | 1 cut(s) | 547 |
| TspDTI | ATGAA | 3 cut(s) | 261, 671, 739 |
| TspGWI | ACGGA | 1 cut(s) | 997 |
| TspRI | CASTG | 1 cut(s) | 361 |
| VpaK11BI | GGWCC | 1 cut(s) | 170 |
| VspI | ATTAAT | 1 cut(s) | 411 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 81 |
| XmiI | GTMKAC | 1 cut(s) | 1014 |
| XspI | CTAG | 5 cut(s) | 593, 659, 675, 764, 1035 |
| ZrmI | AGTACT | 1 cut(s) | 808 |