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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 972 |
| Acc36I | ACCTGC | 3 cut(s) | 631, 748, 1132 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1249 |
| AccBSI | CCGCTC | 1 cut(s) | 285 |
| AccII | CGCG | 6 cut(s) | 64, 130, 297, 1038, 1124, 1161 |
| AccIII | TCCGGA | 1 cut(s) | 535 |
| AclI | AACGTT | 1 cut(s) | 864 |
| AclWI | GGATC | 2 cut(s) | 236, 692 |
| AcoI | YGGCCR | 2 cut(s) | 136, 162 |
| AcsI | RAATTY | 1 cut(s) | 1061 |
| AcuI | CTGAAG | 4 cut(s) | 39, 363, 558, 699 |
| AcvI | CACGTG | 1 cut(s) | 1343 |
| AdeI | CACNNNGTG | 1 cut(s) | 665 |
| AfaI | GTAC | 2 cut(s) | 195, 567 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 82, 134, 167, 310, 311, 602, 1207, 1249 |
| AgsI | TTSAA | 2 cut(s) | 47, 617 |
| AjnI | CCWGG | 8 cut(s) | 35, 81, 133, 305, 601, 747, 928, 1146 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1177, 1209 |
| AluBI | AGCT | 9 cut(s) | 68, 260, 269, 767, 1010, 1058, 1081, 1370, 1386 |
| AluI | AGCT | 9 cut(s) | 68, 260, 269, 767, 1010, 1058, 1081, 1370, 1386 |
| Alw21I | GWGCWC | 3 cut(s) | 70, 127, 1012 |
| Alw26I | GTCTC | 2 cut(s) | 602, 1326 |
| Alw44I | GTGCAC | 1 cut(s) | 123 |
| AlwI | GGATC | 2 cut(s) | 236, 692 |
| Ama87I | CYCGRG | 1 cut(s) | 875 |
| Aor13HI | TCCGGA | 1 cut(s) | 535 |
| AoxI | GGCC | 9 cut(s) | 32, 38, 78, 136, 162, 350, 1162, 1239, 1260 |
| ApaLI | GTGCAC | 1 cut(s) | 123 |
| ApoI | RAATTY | 1 cut(s) | 1061 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 438 |
| AspLEI | GCGC | 7 cut(s) | 64, 132, 279, 299, 415, 580, 1000 |
| AsuC2I | CCSGG | 3 cut(s) | 77, 161, 993 |
| AsuHPI | GGTGA | 7 cut(s) | 498, 617, 728, 1042, 1121, 1181, 1267 |
| AsuNHI | GCTAGC | 2 cut(s) | 386, 1382 |
| AvaI | CYCGRG | 1 cut(s) | 875 |
| AvaII | GGWCC | 7 cut(s) | 52, 289, 427, 974, 1144, 1197, 1210 |
| AxyI | CCTNAGG | 2 cut(s) | 549, 816 |
| BaeGI | GKGCMC | 2 cut(s) | 127, 423 |
| BanII | GRGCYC | 3 cut(s) | 70, 711, 1012 |
| BbrPI | CACGTG | 1 cut(s) | 1343 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 3 cut(s) | 70, 127, 1012 |
| BccI | CCATC | 4 cut(s) | 260, 361, 812, 1018 |
| BceAI | ACGGC | 1 cut(s) | 1275 |
| BciT130I | CCWGG | 8 cut(s) | 37, 83, 135, 307, 603, 749, 930, 1148 |
| BcnI | CCSGG | 3 cut(s) | 77, 161, 993 |
| BcoDI | GTCTC | 2 cut(s) | 602, 1326 |
| BfaI | CTAG | 6 cut(s) | 30, 387, 755, 1137, 1383, 1394 |
| BfmI | CTRYAG | 3 cut(s) | 207, 264, 639 |
| BfoI | RGCGCY | 1 cut(s) | 416 |
| BfuAI | ACCTGC | 3 cut(s) | 631, 748, 1132 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1313 |
| BlpI | GCTNAGC | 1 cut(s) | 705 |
| BmcAI | AGTACT | 1 cut(s) | 195 |
| Bme18I | GGWCC | 7 cut(s) | 52, 289, 427, 974, 1144, 1197, 1210 |
| BmeT110I | CYCGRG | 1 cut(s) | 875 |
| BmiI | GGNNCC | 5 cut(s) | 291, 429, 555, 1199, 1281 |
| BmrI | ACTGGG | 1 cut(s) | 1237 |
| BmsI | GCATC | 2 cut(s) | 99, 529 |
| BmtI | GCTAGC | 2 cut(s) | 390, 1386 |
| BmuI | ACTGGG | 1 cut(s) | 1237 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 1 cut(s) | 636 |
| Bpu10I | CCTNAGC | 3 cut(s) | 510, 1300, 1335 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 705 |
| BpuEI | CTTGAG | 3 cut(s) | 717, 996, 1289 |
| BpuMI | CCSGG | 3 cut(s) | 77, 161, 993 |
| BsaAI | YACGTR | 1 cut(s) | 1343 |
| BsaWI | WCCGGW | 1 cut(s) | 535 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 82, 134, 167, 310, 311, 602, 1207, 1249 |
| Bse118I | RCCGGY | 1 cut(s) | 58 |
| Bse1I | ACTGG | 5 cut(s) | 150, 330, 416, 653, 1243 |
| Bse21I | CCTNAGG | 2 cut(s) | 549, 816 |
| BseAI | TCCGGA | 1 cut(s) | 535 |
| BseBI | CCWGG | 8 cut(s) | 37, 83, 135, 307, 603, 749, 930, 1148 |
| BseGI | GGATG | 1 cut(s) | 544 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 82, 134, 167, 310, 311, 602, 1207, 1249 |
| BseMII | CTCAG | 7 cut(s) | 501, 540, 696, 830, 1298, 1337, 1349 |
| BseNI | ACTGG | 5 cut(s) | 150, 330, 416, 653, 1243 |
| BseRI | GAGGAG | 3 cut(s) | 60, 566, 861 |
| BseSI | GKGCMC | 2 cut(s) | 127, 423 |
| BseX3I | CGGCCG | 1 cut(s) | 162 |
| BseYI | CCCAGC | 1 cut(s) | 365 |
| BsgI | GTGCAG | 2 cut(s) | 506, 1151 |
| Bsh1236I | CGCG | 6 cut(s) | 64, 130, 297, 1038, 1124, 1161 |
| Bsh1285I | CGRYCG | 3 cut(s) | 59, 165, 1128 |
| BshFI | GGCC | 9 cut(s) | 34, 40, 80, 138, 164, 352, 1164, 1241, 1262 |
| BsiEI | CGRYCG | 3 cut(s) | 59, 165, 1128 |
| BsiHKAI | GWGCWC | 3 cut(s) | 70, 127, 1012 |
| BsiHKCI | CYCGRG | 1 cut(s) | 875 |
| BsiSI | CCGG | 7 cut(s) | 59, 77, 161, 168, 515, 536, 992 |
| BslFI | GGGAC | 2 cut(s) | 656, 965 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 82, 134, 167, 310, 311, 602, 1207, 1249 |
| BsmAI | GTCTC | 2 cut(s) | 602, 1326 |
| BsmFI | GGGAC | 2 cut(s) | 656, 965 |
| BsmI | GAATGC | 1 cut(s) | 781 |
| BsnI | GGCC | 9 cut(s) | 34, 40, 80, 138, 164, 352, 1164, 1241, 1262 |
| BsoBI | CYCGRG | 1 cut(s) | 875 |
| Bsp1286I | GDGCHC | 5 cut(s) | 70, 127, 423, 711, 1012 |
| Bsp13I | TCCGGA | 1 cut(s) | 535 |
| Bsp1407I | TGTACA | 1 cut(s) | 565 |
| Bsp143I | GATC | 3 cut(s) | 241, 489, 697 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 705 |
| BspANI | GGCC | 9 cut(s) | 34, 40, 80, 138, 164, 352, 1164, 1241, 1262 |
| BspCNI | CTCAG | 7 cut(s) | 502, 541, 697, 829, 1297, 1336, 1348 |
| BspEI | TCCGGA | 1 cut(s) | 535 |
| BspFNI | CGCG | 6 cut(s) | 64, 130, 297, 1038, 1124, 1161 |
| BspLI | GGNNCC | 5 cut(s) | 291, 429, 555, 1199, 1281 |
| BspMAI | CTGCAG | 2 cut(s) | 211, 643 |
| BspMI | ACCTGC | 3 cut(s) | 631, 748, 1132 |
| BspOI | GCTAGC | 2 cut(s) | 390, 1386 |
| BspPI | GGATC | 2 cut(s) | 236, 692 |
| BspQI | GCTCTTC | 2 cut(s) | 382, 930 |
| BsrBI | CCGCTC | 1 cut(s) | 285 |
| BsrFI | RCCGGY | 1 cut(s) | 58 |
| BsrGI | TGTACA | 1 cut(s) | 565 |
| BsrI | ACTGG | 5 cut(s) | 150, 330, 416, 653, 1243 |
| BssAI | RCCGGY | 1 cut(s) | 58 |
| BssMI | GATC | 3 cut(s) | 241, 489, 697 |
| BssT1I | CCWWGG | 2 cut(s) | 391, 970 |
| Bst2UI | CCWGG | 8 cut(s) | 37, 83, 135, 307, 603, 749, 930, 1148 |
| Bst4CI | ACNGT | 5 cut(s) | 460, 503, 613, 956, 1129 |
| Bst6I | CTCTTC | 4 cut(s) | 48, 382, 675, 930 |
| BstAUI | TGTACA | 1 cut(s) | 565 |
| BstBAI | YACGTR | 1 cut(s) | 1343 |
| BstDEI | CTNAG | 8 cut(s) | 510, 549, 705, 816, 1284, 1300, 1323, 1335 |
| BstDSI | CCRYGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 1 cut(s) | 544 |
| BstFNI | CGCG | 6 cut(s) | 64, 130, 297, 1038, 1124, 1161 |
| BstH2I | RGCGCY | 1 cut(s) | 416 |
| BstHHI | GCGC | 7 cut(s) | 64, 132, 279, 299, 415, 580, 1000 |
| BstKTI | GATC | 3 cut(s) | 244, 492, 700 |
| BstMAI | GTCTC | 2 cut(s) | 602, 1326 |
| BstMBI | GATC | 3 cut(s) | 241, 489, 697 |
| BstMCI | CGRYCG | 3 cut(s) | 59, 165, 1128 |
| BstNI | CCWGG | 8 cut(s) | 37, 83, 135, 307, 603, 749, 930, 1148 |
| BstNSI | RCATGY | 2 cut(s) | 365, 584 |
| BstSFI | CTRYAG | 3 cut(s) | 207, 264, 639 |
| BstSLI | GKGCMC | 2 cut(s) | 127, 423 |
| BstUI | CGCG | 6 cut(s) | 64, 130, 297, 1038, 1124, 1161 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BstZI | CGGCCG | 1 cut(s) | 162 |
| Bsu36I | CCTNAGG | 2 cut(s) | 549, 816 |
| BsuRI | GGCC | 9 cut(s) | 34, 40, 80, 138, 164, 352, 1164, 1241, 1262 |
| BtgI | CCRYGG | 1 cut(s) | 423 |
| BtgZI | GCGATG | 2 cut(s) | 238, 1331 |
| BtsCI | GGATG | 1 cut(s) | 544 |
| BtsIMutI | CAGTG | 3 cut(s) | 157, 323, 423 |
| BveI | ACCTGC | 3 cut(s) | 631, 748, 1132 |
| CfoI | GCGC | 7 cut(s) | 64, 132, 279, 299, 415, 580, 1000 |
| Cfr10I | RCCGGY | 1 cut(s) | 58 |
| CseI | GACGC | 2 cut(s) | 854, 1388 |
| Csp6I | GTAC | 2 cut(s) | 194, 566 |
| CviAII | CATG | 4 cut(s) | 362, 581, 724, 1421 |
| CviQI | GTAC | 2 cut(s) | 194, 566 |
| DdeI | CTNAG | 8 cut(s) | 510, 549, 705, 816, 1284, 1300, 1323, 1335 |
| DpnI | GATC | 3 cut(s) | 243, 491, 699 |
| DpnII | GATC | 3 cut(s) | 241, 489, 697 |
| DraIII | CACNNNGTG | 1 cut(s) | 665 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 972 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 972 |
| EaeI | YGGCCR | 2 cut(s) | 136, 162 |
| EagI | CGGCCG | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 4 cut(s) | 48, 382, 675, 930 |
| EarI | CTCTTC | 4 cut(s) | 48, 382, 675, 930 |
| Ecl136II | GAGCTC | 2 cut(s) | 68, 1010 |
| EclXI | CGGCCG | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 2 cut(s) | 391, 970 |
| Eco24I | GRGCYC | 3 cut(s) | 70, 711, 1012 |
| Eco47I | GGWCC | 7 cut(s) | 52, 289, 427, 974, 1144, 1197, 1210 |
| Eco52I | CGGCCG | 1 cut(s) | 162 |
| Eco53kI | GAGCTC | 2 cut(s) | 68, 1010 |
| Eco57I | CTGAAG | 4 cut(s) | 39, 363, 558, 699 |
| Eco72I | CACGTG | 1 cut(s) | 1343 |
| Eco81I | CCTNAGG | 2 cut(s) | 549, 816 |
| Eco88I | CYCGRG | 1 cut(s) | 875 |
| EcoICRI | GAGCTC | 2 cut(s) | 68, 1010 |
| EcoO109I | RGGNCCY | 2 cut(s) | 33, 1210 |
| EcoRII | CCWGG | 8 cut(s) | 35, 81, 133, 305, 601, 747, 928, 1146 |
| EcoT14I | CCWWGG | 2 cut(s) | 391, 970 |
| EcoT38I | GRGCYC | 3 cut(s) | 70, 711, 1012 |
| ErhI | CCWWGG | 2 cut(s) | 391, 970 |
| FaeI | CATG | 4 cut(s) | 365, 584, 727, 1424 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 909, 941 |
| FaqI | GGGAC | 2 cut(s) | 656, 965 |
| FatI | CATG | 4 cut(s) | 361, 580, 723, 1420 |
| FauI | CCCGC | 2 cut(s) | 718, 1417 |
| FokI | GGATG | 1 cut(s) | 551 |
| FriOI | GRGCYC | 3 cut(s) | 70, 711, 1012 |
| FspBI | CTAG | 6 cut(s) | 30, 387, 755, 1137, 1383, 1394 |
| GlaI | GCGC | 7 cut(s) | 63, 131, 278, 298, 414, 579, 999 |
| GsaI | CCCAGC | 1 cut(s) | 369 |
| GsuI | CTGGAG | 1 cut(s) | 636 |
| HaeII | RGCGCY | 1 cut(s) | 416 |
| HaeIII | GGCC | 9 cut(s) | 34, 40, 80, 138, 164, 352, 1164, 1241, 1262 |
| HapII | CCGG | 7 cut(s) | 59, 77, 161, 168, 515, 536, 992 |
| HgaI | GACGC | 2 cut(s) | 854, 1388 |
| HhaI | GCGC | 7 cut(s) | 64, 132, 279, 299, 415, 580, 1000 |
| Hin1II | CATG | 4 cut(s) | 365, 584, 727, 1424 |
| Hin6I | GCGC | 7 cut(s) | 62, 130, 277, 297, 413, 578, 998 |
| HinP1I | GCGC | 7 cut(s) | 62, 130, 277, 297, 413, 578, 998 |
| HinfI | GANTC | 5 cut(s) | 203, 218, 340, 467, 966 |
| HpaII | CCGG | 7 cut(s) | 59, 77, 161, 168, 515, 536, 992 |
| HphI | GGTGA | 7 cut(s) | 498, 617, 728, 1042, 1121, 1181, 1267 |
| Hpy166II | GTNNAC | 4 cut(s) | 104, 125, 427, 506 |
| Hpy188I | TCNGA | 8 cut(s) | 19, 56, 232, 289, 358, 1287, 1326, 1355 |
| Hpy8I | GTNNAC | 4 cut(s) | 104, 125, 427, 506 |
| Hpy99I | CGWCG | 3 cut(s) | 242, 348, 812 |
| HpyAV | CCTTC | 8 cut(s) | 110, 181, 365, 449, 456, 542, 582, 1318 |
| HpyCH4III | ACNGT | 5 cut(s) | 460, 503, 613, 956, 1129 |
| HpyCH4IV | ACGT | 2 cut(s) | 864, 1342 |
| HpyF3I | CTNAG | 8 cut(s) | 510, 549, 705, 816, 1284, 1300, 1323, 1335 |
| HpySE526I | ACGT | 2 cut(s) | 864, 1342 |
| Hsp92II | CATG | 4 cut(s) | 365, 584, 727, 1424 |
| HspAI | GCGC | 7 cut(s) | 62, 130, 277, 297, 413, 578, 998 |
| Kpn2I | TCCGGA | 1 cut(s) | 535 |
| Kzo9I | GATC | 3 cut(s) | 241, 489, 697 |
| LguI | GCTCTTC | 2 cut(s) | 382, 930 |
| LmnI | GCTCC | 3 cut(s) | 73, 553, 764 |
| LweI | GCATC | 2 cut(s) | 99, 529 |
| MaeI | CTAG | 6 cut(s) | 30, 387, 755, 1137, 1383, 1394 |
| MaeII | ACGT | 2 cut(s) | 864, 1342 |
| MaeIII | GTNAC | 1 cut(s) | 1255 |
| MalI | GATC | 3 cut(s) | 243, 491, 699 |
| MbiI | CCGCTC | 1 cut(s) | 285 |
| MboI | GATC | 3 cut(s) | 241, 489, 697 |
| MhlI | GDGCHC | 5 cut(s) | 70, 127, 423, 711, 1012 |
| MluCI | AATT | 3 cut(s) | 96, 646, 1061 |
| MlyI | GAGTC | 1 cut(s) | 960 |
| MmeI | TCCRAC | 2 cut(s) | 79, 1378 |
| MroI | TCCGGA | 1 cut(s) | 535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 438 |
| MseI | TTAA | 1 cut(s) | 1431 |
| MslI | CAYNNNNRTG | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 2 cut(s) | 260, 713 |
| MspI | CCGG | 7 cut(s) | 59, 77, 161, 168, 515, 536, 992 |
| Mva1269I | GAATGC | 1 cut(s) | 781 |
| MvaI | CCWGG | 8 cut(s) | 37, 83, 135, 307, 603, 749, 930, 1148 |
| MvnI | CGCG | 6 cut(s) | 64, 130, 297, 1038, 1124, 1161 |
| NciI | CCSGG | 3 cut(s) | 77, 161, 993 |
| NdeII | GATC | 3 cut(s) | 241, 489, 697 |
| NheI | GCTAGC | 2 cut(s) | 386, 1382 |
| NlaIII | CATG | 4 cut(s) | 365, 584, 727, 1424 |
| NlaIV | GGNNCC | 5 cut(s) | 291, 429, 555, 1199, 1281 |
| NmuCI | GTSAC | 1 cut(s) | 1255 |
| NspI | RCATGY | 2 cut(s) | 365, 584 |
| PasI | CCCWGGG | 1 cut(s) | 306 |
| PciSI | GCTCTTC | 2 cut(s) | 382, 930 |
| PctI | GAATGC | 1 cut(s) | 781 |
| PdmI | GAANNNNTTC | 1 cut(s) | 438 |
| PfeI | GAWTC | 4 cut(s) | 203, 218, 340, 467 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1249 |
| PfoI | TCCNGGA | 1 cut(s) | 928 |
| PleI | GAGTC | 1 cut(s) | 960 |
| PmaCI | CACGTG | 1 cut(s) | 1343 |
| PmlI | CACGTG | 1 cut(s) | 1343 |
| PpsI | GAGTC | 1 cut(s) | 960 |
| Ppu21I | YACGTR | 1 cut(s) | 1343 |
| PpuMI | RGGWCCY | 1 cut(s) | 1210 |
| Psp124BI | GAGCTC | 2 cut(s) | 70, 1012 |
| Psp1406I | AACGTT | 1 cut(s) | 864 |
| Psp5II | RGGWCCY | 1 cut(s) | 1210 |
| Psp6I | CCWGG | 8 cut(s) | 35, 81, 133, 305, 601, 747, 928, 1146 |
| PspCI | CACGTG | 1 cut(s) | 1343 |
| PspFI | CCCAGC | 1 cut(s) | 365 |
| PspGI | CCWGG | 8 cut(s) | 35, 81, 133, 305, 601, 747, 928, 1146 |
| PspN4I | GGNNCC | 5 cut(s) | 291, 429, 555, 1199, 1281 |
| PspPPI | RGGWCCY | 1 cut(s) | 1210 |
| PstI | CTGCAG | 2 cut(s) | 211, 643 |
| PvuII | CAGCTG | 1 cut(s) | 260 |
| RsaI | GTAC | 2 cut(s) | 195, 567 |
| RsaNI | GTAC | 2 cut(s) | 194, 566 |
| RseI | CAYNNNNRTG | 1 cut(s) | 482 |
| SacI | GAGCTC | 2 cut(s) | 70, 1012 |
| SapI | GCTCTTC | 2 cut(s) | 382, 930 |
| SaqAI | TTAA | 1 cut(s) | 1431 |
| Sau3AI | GATC | 3 cut(s) | 241, 489, 697 |
| ScaI | AGTACT | 1 cut(s) | 195 |
| SchI | GAGTC | 1 cut(s) | 960 |
| SduI | GDGCHC | 5 cut(s) | 70, 127, 423, 711, 1012 |
| SfaNI | GCATC | 2 cut(s) | 99, 529 |
| SfcI | CTRYAG | 3 cut(s) | 207, 264, 639 |
| SinI | GGWCC | 7 cut(s) | 52, 289, 427, 974, 1144, 1197, 1210 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 482 |
| SmlI | CTYRAG | 3 cut(s) | 732, 1011, 1268 |
| SmoI | CTYRAG | 3 cut(s) | 732, 1011, 1268 |
| Sse9I | AATT | 3 cut(s) | 96, 646, 1061 |
| SspI | AATATT | 1 cut(s) | 1019 |
| SspMI | CTAG | 6 cut(s) | 30, 387, 755, 1137, 1383, 1394 |
| SstI | GAGCTC | 2 cut(s) | 70, 1012 |
| StyI | CCWWGG | 2 cut(s) | 391, 970 |
| TaaI | ACNGT | 5 cut(s) | 460, 503, 613, 956, 1129 |
| TaiI | ACGT | 2 cut(s) | 867, 1345 |
| TaqI | TCGA | 4 cut(s) | 810, 915, 1068, 1311 |
| TaqII | GACCGA | 1 cut(s) | 348 |
| TasI | AATT | 3 cut(s) | 96, 646, 1061 |
| TatI | WGTACW | 2 cut(s) | 193, 565 |
| TauI | GCSGC | 7 cut(s) | 141, 144, 167, 285, 836, 1038, 1164 |
| TfiI | GAWTC | 4 cut(s) | 203, 218, 340, 467 |
| Tru1I | TTAA | 1 cut(s) | 1431 |
| Tru9I | TTAA | 1 cut(s) | 1431 |
| TscAI | CASTG | 3 cut(s) | 157, 330, 423 |
| TseFI | GTSAC | 1 cut(s) | 1255 |
| Tsp45I | GTSAC | 1 cut(s) | 1255 |
| TspDTI | ATGAA | 3 cut(s) | 333, 788, 1413 |
| TspGWI | ACGGA | 1 cut(s) | 1117 |
| TspRI | CASTG | 3 cut(s) | 157, 330, 423 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1249 |
| VneI | GTGCAC | 1 cut(s) | 123 |
| VpaK11BI | GGWCC | 7 cut(s) | 52, 289, 427, 974, 1144, 1197, 1210 |
| XapI | RAATTY | 1 cut(s) | 1061 |
| XbaI | TCTAGA | 2 cut(s) | 754, 1393 |
| XceI | RCATGY | 2 cut(s) | 365, 584 |
| XmnI | GAANNNNTTC | 1 cut(s) | 438 |
| XspI | CTAG | 6 cut(s) | 30, 387, 755, 1137, 1383, 1394 |
| ZrmI | AGTACT | 1 cut(s) | 195 |