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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 89, 586 |
| AccII | CGCG | 5 cut(s) | 64, 177, 308, 401, 501 |
| AciI | CCGC | 8 cut(s) | 84, 151, 175, 182, 269, 306, 499, 540 |
| AclWI | GGATC | 3 cut(s) | 230, 672, 685 |
| AcoI | YGGCCR | 3 cut(s) | 366, 450, 564 |
| AcsI | RAATTY | 1 cut(s) | 522 |
| AcyI | GRCGYC | 1 cut(s) | 98 |
| AfaI | GTAC | 1 cut(s) | 246 |
| AflII | CTTAAG | 1 cut(s) | 656 |
| AgsI | TTSAA | 3 cut(s) | 279, 515, 595 |
| AluBI | AGCT | 2 cut(s) | 322, 356 |
| AluI | AGCT | 2 cut(s) | 322, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 341 |
| Alw26I | GTCTC | 2 cut(s) | 27, 701 |
| Alw44I | GTGCAC | 1 cut(s) | 337 |
| AlwI | GGATC | 3 cut(s) | 230, 672, 685 |
| Ama87I | CYCGRG | 2 cut(s) | 154, 461 |
| AoxI | GGCC | 3 cut(s) | 366, 450, 564 |
| ApaLI | GTGCAC | 1 cut(s) | 337 |
| ApeKI | GCWGC | 3 cut(s) | 319, 322, 405 |
| ApoI | RAATTY | 1 cut(s) | 522 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 43, 75 |
| AspLEI | GCGC | 2 cut(s) | 233, 268 |
| AsuC2I | CCSGG | 1 cut(s) | 563 |
| AsuHPI | GGTGA | 2 cut(s) | 248, 498 |
| AvaI | CYCGRG | 2 cut(s) | 154, 461 |
| BaeGI | GKGCMC | 1 cut(s) | 341 |
| BalI | TGGCCA | 1 cut(s) | 452 |
| BamHI | GGATCC | 1 cut(s) | 677 |
| BanII | GRGCYC | 2 cut(s) | 174, 212 |
| Bbv12I | GWGCWC | 1 cut(s) | 341 |
| BbvI | GCAGC | 3 cut(s) | 309, 331, 417 |
| BccI | CCATC | 3 cut(s) | 76, 233, 545 |
| BceAI | ACGGC | 2 cut(s) | 319, 657 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 97, 131 |
| BciVI | GTATCC | 1 cut(s) | 98 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcnI | CCSGG | 1 cut(s) | 563 |
| BcoDI | GTCTC | 2 cut(s) | 27, 701 |
| BfaI | CTAG | 2 cut(s) | 629, 711 |
| BfoI | RGCGCY | 1 cut(s) | 269 |
| BfrI | CTTAAG | 1 cut(s) | 656 |
| BfuAI | ACCTGC | 2 cut(s) | 89, 586 |
| BfuI | GTATCC | 1 cut(s) | 98 |
| BisI | GCNGC | 4 cut(s) | 269, 320, 323, 406 |
| BlsI | GCNGC | 4 cut(s) | 270, 321, 324, 407 |
| Bme1390I | CCNGG | 1 cut(s) | 563 |
| BmeT110I | CYCGRG | 2 cut(s) | 154, 461 |
| BmiI | GGNNCC | 3 cut(s) | 651, 663, 679 |
| BmrFI | CCNGG | 1 cut(s) | 563 |
| BpuEI | CTTGAG | 1 cut(s) | 569 |
| BpuMI | CCSGG | 1 cut(s) | 563 |
| BsaHI | GRCGYC | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 2 cut(s) | 363, 673 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 271, 301 |
| Bse118I | RCCGGY | 2 cut(s) | 159, 233 |
| BseDI | CCNNGG | 2 cut(s) | 363, 673 |
| BseGI | GGATG | 3 cut(s) | 54, 354, 556 |
| BseRI | GAGGAG | 2 cut(s) | 654, 662 |
| BseSI | GKGCMC | 1 cut(s) | 341 |
| BseX3I | CGGCCG | 1 cut(s) | 564 |
| BseXI | GCAGC | 3 cut(s) | 309, 331, 417 |
| Bsh1236I | CGCG | 5 cut(s) | 64, 177, 308, 401, 501 |
| Bsh1285I | CGRYCG | 2 cut(s) | 489, 567 |
| BshFI | GGCC | 3 cut(s) | 368, 452, 566 |
| BsiEI | CGRYCG | 2 cut(s) | 489, 567 |
| BsiHKAI | GWGCWC | 1 cut(s) | 341 |
| BsiHKCI | CYCGRG | 2 cut(s) | 154, 461 |
| BsiSI | CCGG | 3 cut(s) | 160, 234, 563 |
| BslFI | GGGAC | 1 cut(s) | 164 |
| BsmAI | GTCTC | 2 cut(s) | 27, 701 |
| BsmFI | GGGAC | 1 cut(s) | 164 |
| BsnI | GGCC | 3 cut(s) | 368, 452, 566 |
| BsoBI | CYCGRG | 2 cut(s) | 154, 461 |
| Bsp1286I | GDGCHC | 3 cut(s) | 174, 212, 341 |
| Bsp143I | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| Bsp68I | TCGCGA | 2 cut(s) | 64, 401 |
| BspACI | CCGC | 8 cut(s) | 84, 151, 175, 182, 269, 306, 499, 540 |
| BspANI | GGCC | 3 cut(s) | 368, 452, 566 |
| BspFNI | CGCG | 5 cut(s) | 64, 177, 308, 401, 501 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 3 cut(s) | 651, 663, 679 |
| BspMI | ACCTGC | 2 cut(s) | 89, 586 |
| BspPI | GGATC | 3 cut(s) | 230, 672, 685 |
| BspTI | CTTAAG | 1 cut(s) | 656 |
| BsrFI | RCCGGY | 2 cut(s) | 159, 233 |
| BssAI | RCCGGY | 2 cut(s) | 159, 233 |
| BssECI | CCNNGG | 2 cut(s) | 363, 673 |
| BssMI | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| BssNI | GRCGYC | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 3 cut(s) | 256, 366, 510 |
| BstACI | GRCGYC | 1 cut(s) | 98 |
| BstAFI | CTTAAG | 1 cut(s) | 656 |
| BstC8I | GCNNGC | 6 cut(s) | 161, 170, 208, 403, 725, 729 |
| BstDSI | CCRYGG | 2 cut(s) | 363, 673 |
| BstF5I | GGATG | 3 cut(s) | 54, 354, 556 |
| BstFNI | CGCG | 5 cut(s) | 64, 177, 308, 401, 501 |
| BstH2I | RGCGCY | 1 cut(s) | 269 |
| BstHHI | GCGC | 2 cut(s) | 233, 268 |
| BstKTI | GATC | 5 cut(s) | 6, 145, 225, 438, 680 |
| BstMAI | GTCTC | 2 cut(s) | 27, 701 |
| BstMBI | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| BstMCI | CGRYCG | 2 cut(s) | 489, 567 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 165, 169, 174, 331 |
| BstNSI | RCATGY | 1 cut(s) | 731 |
| BstSCI | CCNGG | 1 cut(s) | 561 |
| BstSLI | GKGCMC | 1 cut(s) | 341 |
| BstUI | CGCG | 5 cut(s) | 64, 177, 308, 401, 501 |
| BstV1I | GCAGC | 3 cut(s) | 309, 331, 417 |
| BstX2I | RGATCY | 1 cut(s) | 677 |
| BstYI | RGATCY | 1 cut(s) | 677 |
| BstZI | CGGCCG | 1 cut(s) | 564 |
| BsuI | GTATCC | 1 cut(s) | 98 |
| BsuRI | GGCC | 3 cut(s) | 368, 452, 566 |
| BtgI | CCRYGG | 2 cut(s) | 363, 673 |
| BtsCI | GGATG | 3 cut(s) | 54, 354, 556 |
| BtuMI | TCGCGA | 2 cut(s) | 64, 401 |
| BveI | ACCTGC | 2 cut(s) | 89, 586 |
| Cac8I | GCNNGC | 6 cut(s) | 161, 170, 208, 403, 725, 729 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 2 cut(s) | 233, 268 |
| Cfr10I | RCCGGY | 2 cut(s) | 159, 233 |
| CseI | GACGC | 2 cut(s) | 106, 166 |
| Csp6I | GTAC | 1 cut(s) | 245 |
| CviAII | CATG | 3 cut(s) | 439, 617, 728 |
| CviQI | GTAC | 1 cut(s) | 245 |
| DpnI | GATC | 5 cut(s) | 5, 144, 224, 437, 679 |
| DpnII | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| EaeI | YGGCCR | 3 cut(s) | 366, 450, 564 |
| EagI | CGGCCG | 1 cut(s) | 564 |
| Eam1104I | CTCTTC | 3 cut(s) | 256, 366, 510 |
| EarI | CTCTTC | 3 cut(s) | 256, 366, 510 |
| EclXI | CGGCCG | 1 cut(s) | 564 |
| Eco24I | GRGCYC | 2 cut(s) | 174, 212 |
| Eco52I | CGGCCG | 1 cut(s) | 564 |
| Eco88I | CYCGRG | 2 cut(s) | 154, 461 |
| EcoT38I | GRGCYC | 2 cut(s) | 174, 212 |
| FaeI | CATG | 3 cut(s) | 442, 620, 731 |
| FaiI | YATR | 5 cut(s) | 95, 440, 618, 696, 729 |
| FaqI | GGGAC | 1 cut(s) | 164 |
| FatI | CATG | 3 cut(s) | 438, 616, 727 |
| FauI | CCCGC | 4 cut(s) | 182, 189, 506, 547 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 4 cut(s) | 269, 320, 323, 406 |
| FokI | GGATG | 3 cut(s) | 61, 361, 563 |
| FriOI | GRGCYC | 2 cut(s) | 174, 212 |
| Fsp4HI | GCNGC | 4 cut(s) | 269, 320, 323, 406 |
| FspBI | CTAG | 2 cut(s) | 629, 711 |
| GlaI | GCGC | 2 cut(s) | 232, 267 |
| GluI | GCNGC | 4 cut(s) | 269, 320, 323, 406 |
| HaeII | RGCGCY | 1 cut(s) | 269 |
| HaeIII | GGCC | 3 cut(s) | 368, 452, 566 |
| HapII | CCGG | 3 cut(s) | 160, 234, 563 |
| HgaI | GACGC | 2 cut(s) | 106, 166 |
| HhaI | GCGC | 2 cut(s) | 233, 268 |
| Hin1I | GRCGYC | 1 cut(s) | 98 |
| Hin1II | CATG | 3 cut(s) | 442, 620, 731 |
| Hin6I | GCGC | 2 cut(s) | 231, 266 |
| HinP1I | GCGC | 2 cut(s) | 231, 266 |
| HincII | GTYRAC | 1 cut(s) | 301 |
| HindII | GTYRAC | 1 cut(s) | 301 |
| HinfI | GANTC | 4 cut(s) | 275, 314, 503, 620 |
| HpaII | CCGG | 3 cut(s) | 160, 234, 563 |
| HphI | GGTGA | 2 cut(s) | 248, 498 |
| Hpy166II | GTNNAC | 2 cut(s) | 301, 339 |
| Hpy188I | TCNGA | 1 cut(s) | 430 |
| Hpy188III | TCNNGA | 5 cut(s) | 63, 400, 461, 532, 617 |
| Hpy8I | GTNNAC | 2 cut(s) | 301, 339 |
| Hpy99I | CGWCG | 1 cut(s) | 672 |
| HpyCH4V | TGCA | 2 cut(s) | 216, 339 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 165, 169, 174, 331 |
| Hsp92I | GRCGYC | 1 cut(s) | 98 |
| Hsp92II | CATG | 3 cut(s) | 442, 620, 731 |
| HspAI | GCGC | 2 cut(s) | 231, 266 |
| KroI | GCCGGC | 1 cut(s) | 159 |
| KroNI | GCCGGC | 1 cut(s) | 161 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| LmnI | GCTCC | 2 cut(s) | 649, 667 |
| LpnPI | CCDG | 8 cut(s) | 21, 94, 173, 247, 456, 533, 576, 591 |
| Lsp1109I | GCAGC | 3 cut(s) | 309, 331, 417 |
| MaeI | CTAG | 2 cut(s) | 629, 711 |
| MaeIII | GTNAC | 1 cut(s) | 504 |
| MalI | GATC | 5 cut(s) | 5, 144, 224, 437, 679 |
| MboI | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| MboII | GAAGA | 6 cut(s) | 63, 142, 148, 243, 383, 527 |
| MfeI | CAATTG | 1 cut(s) | 30 |
| MflI | RGATCY | 1 cut(s) | 677 |
| MhlI | GDGCHC | 3 cut(s) | 174, 212, 341 |
| MlsI | TGGCCA | 1 cut(s) | 452 |
| MluCI | AATT | 3 cut(s) | 30, 454, 522 |
| MluNI | TGGCCA | 1 cut(s) | 452 |
| MlyI | GAGTC | 1 cut(s) | 512 |
| Mox20I | TGGCCA | 1 cut(s) | 452 |
| MroNI | GCCGGC | 1 cut(s) | 159 |
| MscI | TGGCCA | 1 cut(s) | 452 |
| MseI | TTAA | 1 cut(s) | 657 |
| Msp20I | TGGCCA | 1 cut(s) | 452 |
| MspA1I | CMGCKG | 1 cut(s) | 322 |
| MspCI | CTTAAG | 1 cut(s) | 656 |
| MspI | CCGG | 3 cut(s) | 160, 234, 563 |
| MspR9I | CCNGG | 1 cut(s) | 563 |
| MunI | CAATTG | 1 cut(s) | 30 |
| MvnI | CGCG | 5 cut(s) | 64, 177, 308, 401, 501 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 165, 169, 174, 331 |
| NaeI | GCCGGC | 1 cut(s) | 161 |
| NciI | CCSGG | 1 cut(s) | 563 |
| NdeII | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| NgoMIV | GCCGGC | 1 cut(s) | 159 |
| NlaIII | CATG | 3 cut(s) | 442, 620, 731 |
| NlaIV | GGNNCC | 3 cut(s) | 651, 663, 679 |
| NmeAIII | GCCGAG | 1 cut(s) | 568 |
| NmuCI | GTSAC | 1 cut(s) | 504 |
| NruI | TCGCGA | 2 cut(s) | 64, 401 |
| NspI | RCATGY | 1 cut(s) | 731 |
| PaeI | GCATGC | 1 cut(s) | 731 |
| PaeR7I | CTCGAG | 1 cut(s) | 461 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 104 |
| PdiI | GCCGGC | 1 cut(s) | 161 |
| PfeI | GAWTC | 3 cut(s) | 275, 314, 620 |
| PkrI | GCNGC | 4 cut(s) | 270, 321, 324, 407 |
| PleI | GAGTC | 1 cut(s) | 511 |
| PpsI | GAGTC | 1 cut(s) | 511 |
| PspN4I | GGNNCC | 3 cut(s) | 651, 663, 679 |
| PsuI | RGATCY | 1 cut(s) | 677 |
| PvuII | CAGCTG | 1 cut(s) | 322 |
| RruI | TCGCGA | 2 cut(s) | 64, 401 |
| RsaI | GTAC | 1 cut(s) | 246 |
| RsaNI | GTAC | 1 cut(s) | 245 |
| SaqAI | TTAA | 1 cut(s) | 657 |
| SatI | GCNGC | 4 cut(s) | 269, 320, 323, 406 |
| Sau3AI | GATC | 5 cut(s) | 3, 142, 222, 435, 677 |
| SchI | GAGTC | 1 cut(s) | 512 |
| ScrFI | CCNGG | 1 cut(s) | 563 |
| SduI | GDGCHC | 3 cut(s) | 174, 212, 341 |
| Sfr274I | CTCGAG | 1 cut(s) | 461 |
| SgrAI | CRCCGGYG | 1 cut(s) | 233 |
| SlaI | CTCGAG | 1 cut(s) | 461 |
| SmlI | CTYRAG | 3 cut(s) | 461, 584, 656 |
| SmoI | CTYRAG | 3 cut(s) | 461, 584, 656 |
| SphI | GCATGC | 1 cut(s) | 731 |
| Sse9I | AATT | 3 cut(s) | 30, 454, 522 |
| SsiI | CCGC | 8 cut(s) | 84, 151, 175, 182, 269, 306, 499, 540 |
| SspMI | CTAG | 2 cut(s) | 629, 711 |
| StyD4I | CCNGG | 1 cut(s) | 561 |
| TaqI | TCGA | 3 cut(s) | 462, 531, 645 |
| TaqII | GACCGA | 1 cut(s) | 503 |
| TasI | AATT | 3 cut(s) | 30, 454, 522 |
| TauI | GCSGC | 1 cut(s) | 271 |
| TfiI | GAWTC | 3 cut(s) | 275, 314, 620 |
| Tru1I | TTAA | 1 cut(s) | 657 |
| Tru9I | TTAA | 1 cut(s) | 657 |
| TseFI | GTSAC | 1 cut(s) | 504 |
| TseI | GCWGC | 3 cut(s) | 319, 322, 405 |
| Tsp45I | GTSAC | 1 cut(s) | 504 |
| TspDTI | ATGAA | 2 cut(s) | 149, 633 |
| TspGWI | ACGGA | 1 cut(s) | 352 |
| Vha464I | CTTAAG | 1 cut(s) | 656 |
| VneI | GTGCAC | 1 cut(s) | 337 |
| XapI | RAATTY | 1 cut(s) | 522 |
| XceI | RCATGY | 1 cut(s) | 731 |
| XhoI | CTCGAG | 1 cut(s) | 461 |
| XspI | CTAG | 2 cut(s) | 629, 711 |