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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 4 cut(s) | 15, 204, 290, 535 |
| AccIII | TCCGGA | 1 cut(s) | 436 |
| AciI | CCGC | 8 cut(s) | 55, 164, 221, 279, 494, 533, 557, 593 |
| AclWI | GGATC | 3 cut(s) | 65, 507, 520 |
| AcsI | RAATTY | 1 cut(s) | 444 |
| AcuI | CTGAAG | 1 cut(s) | 59 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 220, 571 |
| AgeI | ACCGGT | 1 cut(s) | 450 |
| AgsI | TTSAA | 5 cut(s) | 98, 297, 328, 359, 369 |
| AjnI | CCWGG | 1 cut(s) | 635 |
| AluBI | AGCT | 3 cut(s) | 194, 200, 230 |
| AluI | AGCT | 3 cut(s) | 194, 200, 230 |
| Alw26I | GTCTC | 3 cut(s) | 42, 430, 523 |
| AlwI | GGATC | 3 cut(s) | 65, 507, 520 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 506 |
| Aor13HI | TCCGGA | 1 cut(s) | 436 |
| AoxI | GGCC | 6 cut(s) | 120, 165, 384, 392, 562, 573 |
| ApoI | RAATTY | 1 cut(s) | 444 |
| AsiGI | ACCGGT | 1 cut(s) | 450 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuC2I | CCSGG | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 1 cut(s) | 440 |
| AsuII | TTCGAA | 1 cut(s) | 171 |
| BamHI | GGATCC | 1 cut(s) | 512 |
| BccI | CCATC | 2 cut(s) | 344, 434 |
| BceAI | ACGGC | 3 cut(s) | 135, 399, 507 |
| BciT130I | CCWGG | 1 cut(s) | 637 |
| BcnI | CCSGG | 1 cut(s) | 124 |
| BcoDI | GTCTC | 3 cut(s) | 42, 430, 523 |
| BfaI | CTAG | 3 cut(s) | 149, 161, 191 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 218 |
| BisI | GCNGC | 1 cut(s) | 165 |
| BlsI | GCNGC | 1 cut(s) | 166 |
| Bme1390I | CCNGG | 2 cut(s) | 124, 637 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 3 cut(s) | 141, 498, 514 |
| BmrFI | CCNGG | 2 cut(s) | 124, 637 |
| BmsI | GCATC | 1 cut(s) | 229 |
| Bpu14I | TTCGAA | 1 cut(s) | 171 |
| BpuEI | CTTGAG | 3 cut(s) | 149, 180, 386 |
| BpuMI | CCSGG | 1 cut(s) | 124 |
| BsaI | GGTCTC | 1 cut(s) | 430 |
| BsaJI | CCNNGG | 1 cut(s) | 635 |
| BsaWI | WCCGGW | 2 cut(s) | 436, 450 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 220, 571 |
| Bse118I | RCCGGY | 1 cut(s) | 450 |
| Bse1I | ACTGG | 2 cut(s) | 243, 408 |
| BseAI | TCCGGA | 1 cut(s) | 436 |
| BseBI | CCWGG | 1 cut(s) | 637 |
| BseDI | CCNNGG | 1 cut(s) | 635 |
| BseGI | GGATG | 1 cut(s) | 445 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 220, 571 |
| BseMII | CTCAG | 1 cut(s) | 498 |
| BseNI | ACTGG | 2 cut(s) | 243, 408 |
| BseRI | GAGGAG | 1 cut(s) | 511 |
| Bsh1236I | CGCG | 4 cut(s) | 15, 204, 290, 535 |
| Bsh1285I | CGRYCG | 1 cut(s) | 580 |
| BshFI | GGCC | 6 cut(s) | 122, 167, 386, 394, 564, 575 |
| BshTI | ACCGGT | 1 cut(s) | 450 |
| BsiEI | CGRYCG | 1 cut(s) | 580 |
| BsiSI | CCGG | 3 cut(s) | 124, 437, 451 |
| BslFI | GGGAC | 1 cut(s) | 64 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 220, 571 |
| BsmAI | GTCTC | 3 cut(s) | 42, 430, 523 |
| BsmBI | CGTCTC | 1 cut(s) | 523 |
| BsmFI | GGGAC | 1 cut(s) | 64 |
| BsmI | GAATGC | 1 cut(s) | 323 |
| BsnI | GGCC | 6 cut(s) | 122, 167, 386, 394, 564, 575 |
| Bso31I | GGTCTC | 1 cut(s) | 430 |
| Bsp119I | TTCGAA | 1 cut(s) | 171 |
| Bsp13I | TCCGGA | 1 cut(s) | 436 |
| Bsp143I | GATC | 3 cut(s) | 57, 315, 512 |
| Bsp68I | TCGCGA | 2 cut(s) | 15, 204 |
| BspACI | CCGC | 8 cut(s) | 55, 164, 221, 279, 494, 533, 557, 593 |
| BspANI | GGCC | 6 cut(s) | 122, 167, 386, 394, 564, 575 |
| BspCNI | CTCAG | 1 cut(s) | 499 |
| BspEI | TCCGGA | 1 cut(s) | 436 |
| BspFNI | CGCG | 4 cut(s) | 15, 204, 290, 535 |
| BspLI | GGNNCC | 3 cut(s) | 141, 498, 514 |
| BspPI | GGATC | 3 cut(s) | 65, 507, 520 |
| BspT104I | TTCGAA | 1 cut(s) | 171 |
| BspTNI | GGTCTC | 1 cut(s) | 430 |
| BsrFI | RCCGGY | 1 cut(s) | 450 |
| BsrI | ACTGG | 2 cut(s) | 243, 408 |
| BssAI | RCCGGY | 1 cut(s) | 450 |
| BssECI | CCNNGG | 1 cut(s) | 635 |
| BssMI | GATC | 3 cut(s) | 57, 315, 512 |
| Bst2UI | CCWGG | 1 cut(s) | 637 |
| Bst4CI | ACNGT | 3 cut(s) | 112, 235, 581 |
| BstBI | TTCGAA | 1 cut(s) | 171 |
| BstC8I | GCNNGC | 2 cut(s) | 202, 228 |
| BstDEI | CTNAG | 2 cut(s) | 23, 507 |
| BstF5I | GGATG | 1 cut(s) | 445 |
| BstFNI | CGCG | 4 cut(s) | 15, 204, 290, 535 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 3 cut(s) | 60, 318, 515 |
| BstMAI | GTCTC | 3 cut(s) | 42, 430, 523 |
| BstMBI | GATC | 3 cut(s) | 57, 315, 512 |
| BstMCI | CGRYCG | 1 cut(s) | 580 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 61, 218, 227, 287 |
| BstNI | CCWGG | 1 cut(s) | 637 |
| BstNSI | RCATGY | 1 cut(s) | 418 |
| BstSCI | CCNGG | 2 cut(s) | 122, 635 |
| BstUI | CGCG | 4 cut(s) | 15, 204, 290, 535 |
| BstX2I | RGATCY | 1 cut(s) | 512 |
| BstYI | RGATCY | 1 cut(s) | 512 |
| BsuRI | GGCC | 6 cut(s) | 122, 167, 386, 394, 564, 575 |
| BtsCI | GGATG | 1 cut(s) | 445 |
| BtsIMutI | CAGTG | 1 cut(s) | 415 |
| BtuMI | TCGCGA | 2 cut(s) | 15, 204 |
| Cac8I | GCNNGC | 2 cut(s) | 202, 228 |
| CaiI | CAGNNNCTG | 1 cut(s) | 506 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr10I | RCCGGY | 1 cut(s) | 450 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| CseI | GACGC | 1 cut(s) | 488 |
| CspAI | ACCGGT | 1 cut(s) | 450 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 391, 426 |
| CviAII | CATG | 3 cut(s) | 134, 390, 415 |
| DdeI | CTNAG | 2 cut(s) | 23, 507 |
| DpnI | GATC | 3 cut(s) | 59, 317, 514 |
| DpnII | GATC | 3 cut(s) | 57, 315, 512 |
| EciI | GGCGGA | 3 cut(s) | 236, 509, 572 |
| Eco31I | GGTCTC | 1 cut(s) | 430 |
| Eco57I | CTGAAG | 1 cut(s) | 59 |
| EcoRI | GAATTC | 1 cut(s) | 444 |
| EcoRII | CCWGG | 1 cut(s) | 635 |
| Esp3I | CGTCTC | 1 cut(s) | 523 |
| FaeI | CATG | 3 cut(s) | 137, 393, 418 |
| FaiI | YATR | 4 cut(s) | 135, 391, 416, 475 |
| FaqI | GGGAC | 1 cut(s) | 64 |
| FatI | CATG | 3 cut(s) | 133, 389, 414 |
| FauI | CCCGC | 1 cut(s) | 286 |
| Fnu4HI | GCNGC | 1 cut(s) | 165 |
| FokI | GGATG | 1 cut(s) | 452 |
| Fsp4HI | GCNGC | 1 cut(s) | 165 |
| FspBI | CTAG | 3 cut(s) | 149, 161, 191 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GluI | GCNGC | 1 cut(s) | 165 |
| HaeIII | GGCC | 6 cut(s) | 122, 167, 386, 394, 564, 575 |
| HapII | CCGG | 3 cut(s) | 124, 437, 451 |
| HgaI | GACGC | 1 cut(s) | 488 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin1II | CATG | 3 cut(s) | 137, 393, 418 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HinfI | GANTC | 2 cut(s) | 206, 503 |
| HpaII | CCGG | 3 cut(s) | 124, 437, 451 |
| HphI | GGTGA | 1 cut(s) | 440 |
| Hpy188I | TCNGA | 4 cut(s) | 313, 508, 526, 612 |
| Hpy188III | TCNNGA | 4 cut(s) | 14, 203, 429, 437 |
| Hpy99I | CGWCG | 1 cut(s) | 482 |
| HpyAV | CCTTC | 4 cut(s) | 178, 313, 375, 554 |
| HpyCH4III | ACNGT | 3 cut(s) | 112, 235, 581 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 61, 218, 227, 287 |
| HpyF3I | CTNAG | 2 cut(s) | 23, 507 |
| Hsp92II | CATG | 3 cut(s) | 137, 393, 418 |
| HspAI | GCGC | 1 cut(s) | 290 |
| Kpn2I | TCCGGA | 1 cut(s) | 436 |
| Kzo9I | GATC | 3 cut(s) | 57, 315, 512 |
| LmnI | GCTCC | 3 cut(s) | 223, 487, 539 |
| LweI | GCATC | 1 cut(s) | 229 |
| MaeI | CTAG | 3 cut(s) | 149, 161, 191 |
| MaeIII | GTNAC | 1 cut(s) | 115 |
| MalI | GATC | 3 cut(s) | 59, 317, 514 |
| MboI | GATC | 3 cut(s) | 57, 315, 512 |
| MboII | GAAGA | 3 cut(s) | 65, 576, 579 |
| MfeI | CAATTG | 1 cut(s) | 104 |
| MflI | RGATCY | 1 cut(s) | 512 |
| MluCI | AATT | 3 cut(s) | 104, 328, 444 |
| MnlI | CCTC | 8 cut(s) | 19, 130, 397, 502, 532, 539, 565, 633 |
| MroI | TCCGGA | 1 cut(s) | 436 |
| MspI | CCGG | 3 cut(s) | 124, 437, 451 |
| MspR9I | CCNGG | 2 cut(s) | 124, 637 |
| MunI | CAATTG | 1 cut(s) | 104 |
| Mva1269I | GAATGC | 1 cut(s) | 323 |
| MvaI | CCWGG | 1 cut(s) | 637 |
| MvnI | CGCG | 4 cut(s) | 15, 204, 290, 535 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 61, 218, 227, 287 |
| NciI | CCSGG | 1 cut(s) | 124 |
| NdeII | GATC | 3 cut(s) | 57, 315, 512 |
| NlaIII | CATG | 3 cut(s) | 137, 393, 418 |
| NlaIV | GGNNCC | 3 cut(s) | 141, 498, 514 |
| NmuCI | GTSAC | 1 cut(s) | 115 |
| NruI | TCGCGA | 2 cut(s) | 15, 204 |
| NspI | RCATGY | 1 cut(s) | 418 |
| NspV | TTCGAA | 1 cut(s) | 171 |
| PctI | GAATGC | 1 cut(s) | 323 |
| PfeI | GAWTC | 2 cut(s) | 206, 503 |
| PinAI | ACCGGT | 1 cut(s) | 450 |
| PkrI | GCNGC | 1 cut(s) | 166 |
| Psp6I | CCWGG | 1 cut(s) | 635 |
| PspGI | CCWGG | 1 cut(s) | 635 |
| PspN4I | GGNNCC | 3 cut(s) | 141, 498, 514 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PstNI | CAGNNNCTG | 1 cut(s) | 506 |
| PsuI | RGATCY | 1 cut(s) | 512 |
| RruI | TCGCGA | 2 cut(s) | 15, 204 |
| SatI | GCNGC | 1 cut(s) | 165 |
| Sau3AI | GATC | 3 cut(s) | 57, 315, 512 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 124, 637 |
| SetI | ASST | 6 cut(s) | 11, 192, 196, 202, 232, 644 |
| SfaNI | GCATC | 1 cut(s) | 229 |
| SfuI | TTCGAA | 1 cut(s) | 171 |
| SmlI | CTYRAG | 3 cut(s) | 128, 195, 401 |
| SmoI | CTYRAG | 3 cut(s) | 128, 195, 401 |
| Sse9I | AATT | 3 cut(s) | 104, 328, 444 |
| SsiI | CCGC | 8 cut(s) | 55, 164, 221, 279, 494, 533, 557, 593 |
| SspMI | CTAG | 3 cut(s) | 149, 161, 191 |
| StyD4I | CCNGG | 2 cut(s) | 122, 635 |
| TaaI | ACNGT | 3 cut(s) | 112, 235, 581 |
| TaqI | TCGA | 2 cut(s) | 171, 237 |
| TaqII | GACCGA | 1 cut(s) | 480 |
| TasI | AATT | 3 cut(s) | 104, 328, 444 |
| TauI | GCSGC | 1 cut(s) | 167 |
| TfiI | GAWTC | 2 cut(s) | 206, 503 |
| TscAI | CASTG | 1 cut(s) | 415 |
| TseFI | GTSAC | 1 cut(s) | 115 |
| Tsp45I | GTSAC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 1 cut(s) | 295 |
| TspGWI | ACGGA | 2 cut(s) | 505, 615 |
| TspRI | CASTG | 1 cut(s) | 415 |
| XapI | RAATTY | 1 cut(s) | 444 |
| XceI | RCATGY | 1 cut(s) | 418 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 250 |
| XspI | CTAG | 3 cut(s) | 149, 161, 191 |