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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1374, 1676 |
| Acc36I | ACCTGC | 2 cut(s) | 1150, 1534 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1708 |
| AccI | GTMKAC | 1 cut(s) | 1251 |
| AclI | AACGTT | 2 cut(s) | 102, 337 |
| AcoI | YGGCCR | 5 cut(s) | 16, 189, 424, 466, 492 |
| AcsI | RAATTY | 1 cut(s) | 1463 |
| AcuI | CTGAAG | 3 cut(s) | 552, 564, 765 |
| AcvI | CACGTG | 1 cut(s) | 1802 |
| AcyI | GRCGYC | 1 cut(s) | 1254 |
| AfaI | GTAC | 4 cut(s) | 233, 525, 1314, 1447 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 47, 282, 464, 938, 1004, 1081, 1163, 1708 |
| AgeI | ACCGGT | 3 cut(s) | 40, 275, 1192 |
| AgsI | TTSAA | 2 cut(s) | 1457, 1667 |
| AjnI | CCWGG | 7 cut(s) | 505, 749, 1003, 1330, 1371, 1674, 1841 |
| AluBI | AGCT | 9 cut(s) | 536, 542, 599, 785, 1016, 1052, 1412, 1483, 1553 |
| AluI | AGCT | 9 cut(s) | 536, 542, 599, 785, 1016, 1052, 1412, 1483, 1553 |
| Alw21I | GWGCWC | 1 cut(s) | 1414 |
| Alw26I | GTCTC | 2 cut(s) | 1045, 1785 |
| Ama87I | CYCGRG | 1 cut(s) | 810 |
| ApaI | GGGCCC | 3 cut(s) | 55, 290, 833 |
| ApoI | RAATTY | 1 cut(s) | 1463 |
| AsiGI | ACCGGT | 3 cut(s) | 40, 275, 1192 |
| AspLEI | GCGC | 8 cut(s) | 457, 462, 817, 982, 1030, 1169, 1186, 1827 |
| AsuC2I | CCSGG | 3 cut(s) | 939, 1188, 1395 |
| AsuHPI | GGTGA | 2 cut(s) | 1019, 1130 |
| AvaI | CYCGRG | 1 cut(s) | 810 |
| AvaII | GGWCC | 4 cut(s) | 1190, 1376, 1546, 1678 |
| AxyI | CCTNAGG | 1 cut(s) | 1218 |
| BaeGI | GKGCMC | 5 cut(s) | 55, 290, 833, 944, 1400 |
| BalI | TGGCCA | 1 cut(s) | 468 |
| BamHI | GGATCC | 3 cut(s) | 135, 370, 955 |
| BanII | GRGCYC | 8 cut(s) | 33, 55, 268, 290, 833, 1026, 1113, 1414 |
| BauI | CACGAG | 1 cut(s) | 221 |
| BbrPI | CACGTG | 1 cut(s) | 1802 |
| Bbv12I | GWGCWC | 1 cut(s) | 1414 |
| BccI | CCATC | 5 cut(s) | 204, 439, 857, 1420, 1457 |
| BceAI | ACGGC | 5 cut(s) | 31, 1241, 1734, 1793, 1817 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 198, 232, 1241, 1275 |
| BciT130I | CCWGG | 7 cut(s) | 507, 751, 1005, 1332, 1373, 1676, 1843 |
| BcnI | CCSGG | 3 cut(s) | 939, 1188, 1395 |
| BcoDI | GTCTC | 2 cut(s) | 1045, 1785 |
| BfaI | CTAG | 2 cut(s) | 789, 1601 |
| BfmI | CTRYAG | 3 cut(s) | 537, 594, 1077 |
| BfoI | RGCGCY | 3 cut(s) | 818, 1170, 1187 |
| BfuAI | ACCTGC | 2 cut(s) | 1150, 1534 |
| BlpI | GCTNAGC | 2 cut(s) | 871, 1107 |
| BmcAI | AGTACT | 2 cut(s) | 233, 525 |
| Bme18I | GGWCC | 4 cut(s) | 1190, 1376, 1546, 1678 |
| BmeT110I | CYCGRG | 1 cut(s) | 810 |
| BmrI | ACTGGG | 1 cut(s) | 698 |
| BmsI | GCATC | 5 cut(s) | 72, 94, 307, 329, 995 |
| BmuI | ACTGGG | 1 cut(s) | 698 |
| BpmI | CTGGAG | 3 cut(s) | 1316, 1658, 1825 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 871, 1107 |
| BpuEI | CTTGAG | 4 cut(s) | 971, 1002, 1398, 1779 |
| BpuMI | CCSGG | 3 cut(s) | 939, 1188, 1395 |
| Bsa29I | ATCGAT | 1 cut(s) | 1509 |
| BsaAI | YACGTR | 1 cut(s) | 1802 |
| BsaBI | GATNNNNATC | 1 cut(s) | 999 |
| BsaHI | GRCGYC | 1 cut(s) | 1254 |
| BsaJI | CCNNGG | 8 cut(s) | 463, 635, 749, 825, 1330, 1331, 1372, 1695 |
| BsaWI | WCCGGW | 3 cut(s) | 40, 275, 1192 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 47, 282, 464, 938, 1004, 1081, 1163, 1708 |
| Bse118I | RCCGGY | 6 cut(s) | 40, 187, 275, 422, 1030, 1192 |
| Bse1I | ACTGG | 3 cut(s) | 480, 495, 704 |
| Bse21I | CCTNAGG | 1 cut(s) | 1218 |
| Bse3DI | GCAATG | 2 cut(s) | 1125, 1827 |
| Bse8I | GATNNNNATC | 1 cut(s) | 999 |
| BseBI | CCWGG | 7 cut(s) | 507, 751, 1005, 1332, 1373, 1676, 1843 |
| BseCI | ATCGAT | 1 cut(s) | 1509 |
| BseDI | CCNNGG | 8 cut(s) | 463, 635, 749, 825, 1330, 1331, 1372, 1695 |
| BseGI | GGATG | 2 cut(s) | 85, 320 |
| BseJI | GATNNNNATC | 1 cut(s) | 999 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 47, 282, 464, 938, 1004, 1081, 1163, 1708 |
| BseMI | GCAATG | 2 cut(s) | 1125, 1827 |
| BseMII | CTCAG | 6 cut(s) | 243, 1056, 1098, 1232, 1757, 1796 |
| BseNI | ACTGG | 3 cut(s) | 480, 495, 704 |
| BseRI | GAGGAG | 1 cut(s) | 1097 |
| BseSI | GKGCMC | 5 cut(s) | 55, 290, 833, 944, 1400 |
| BseX3I | CGGCCG | 3 cut(s) | 16, 189, 424 |
| BseYI | CCCAGC | 1 cut(s) | 767 |
| BsgI | GTGCAG | 3 cut(s) | 908, 951, 1485 |
| Bsh1285I | CGRYCG | 8 cut(s) | 19, 192, 427, 963, 1197, 1524, 1530, 1609 |
| BshTI | ACCGGT | 3 cut(s) | 40, 275, 1192 |
| BshVI | ATCGAT | 1 cut(s) | 1509 |
| BsiEI | CGRYCG | 8 cut(s) | 19, 192, 427, 963, 1197, 1524, 1530, 1609 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1414 |
| BsiHKCI | CYCGRG | 1 cut(s) | 810 |
| BslFI | GGGAC | 5 cut(s) | 732, 1058, 1203, 1236, 1367 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 47, 282, 464, 938, 1004, 1081, 1163, 1708 |
| BsmAI | GTCTC | 2 cut(s) | 1045, 1785 |
| BsmFI | GGGAC | 5 cut(s) | 732, 1058, 1203, 1236, 1367 |
| BsoBI | CYCGRG | 1 cut(s) | 810 |
| Bsp120I | GGGCCC | 3 cut(s) | 51, 286, 829 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 871, 1107 |
| Bsp68I | TCGCGA | 1 cut(s) | 1593 |
| BspCNI | CTCAG | 6 cut(s) | 244, 1055, 1099, 1231, 1756, 1795 |
| BspDI | ATCGAT | 1 cut(s) | 1509 |
| BspMAI | CTGCAG | 2 cut(s) | 541, 1081 |
| BspMI | ACCTGC | 2 cut(s) | 1150, 1534 |
| BspQI | GCTCTTC | 1 cut(s) | 784 |
| BsrDI | GCAATG | 2 cut(s) | 1125, 1827 |
| BsrFI | RCCGGY | 6 cut(s) | 40, 187, 275, 422, 1030, 1192 |
| BsrI | ACTGG | 3 cut(s) | 480, 495, 704 |
| BssAI | RCCGGY | 6 cut(s) | 40, 187, 275, 422, 1030, 1192 |
| BssECI | CCNNGG | 8 cut(s) | 463, 635, 749, 825, 1330, 1331, 1372, 1695 |
| BssNI | GRCGYC | 1 cut(s) | 1254 |
| BssSI | CACGAG | 1 cut(s) | 221 |
| BssT1I | CCWWGG | 3 cut(s) | 463, 635, 1695 |
| Bst2BI | CACGAG | 1 cut(s) | 221 |
| Bst2UI | CCWGG | 7 cut(s) | 507, 751, 1005, 1332, 1373, 1676, 1843 |
| Bst4CI | ACNGT | 1 cut(s) | 583 |
| Bst6I | CTCTTC | 1 cut(s) | 784 |
| BstACI | GRCGYC | 1 cut(s) | 1254 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 527 |
| BstBAI | YACGTR | 1 cut(s) | 1802 |
| BstDEI | CTNAG | 8 cut(s) | 252, 871, 1042, 1107, 1218, 1743, 1768, 1782 |
| BstDSI | CCRYGG | 1 cut(s) | 825 |
| BstF5I | GGATG | 2 cut(s) | 85, 320 |
| BstH2I | RGCGCY | 3 cut(s) | 818, 1170, 1187 |
| BstHHI | GCGC | 8 cut(s) | 457, 462, 817, 982, 1030, 1169, 1186, 1827 |
| BstMAI | GTCTC | 2 cut(s) | 1045, 1785 |
| BstMCI | CGRYCG | 8 cut(s) | 19, 192, 427, 963, 1197, 1524, 1530, 1609 |
| BstNI | CCWGG | 7 cut(s) | 507, 751, 1005, 1332, 1373, 1676, 1843 |
| BstNSI | RCATGY | 3 cut(s) | 67, 302, 767 |
| BstSFI | CTRYAG | 3 cut(s) | 537, 594, 1077 |
| BstSLI | GKGCMC | 5 cut(s) | 55, 290, 833, 944, 1400 |
| BstX2I | RGATCY | 5 cut(s) | 135, 370, 955, 1627, 1635 |
| BstYI | RGATCY | 5 cut(s) | 135, 370, 955, 1627, 1635 |
| BstZI | CGGCCG | 3 cut(s) | 16, 189, 424 |
| Bsu15I | ATCGAT | 1 cut(s) | 1509 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1218 |
| BsuTUI | ATCGAT | 1 cut(s) | 1509 |
| BtgI | CCRYGG | 1 cut(s) | 825 |
| BtgZI | GCGATG | 2 cut(s) | 972, 1790 |
| BtsCI | GGATG | 2 cut(s) | 85, 320 |
| BtsIMutI | CAGTG | 3 cut(s) | 487, 488, 858 |
| BtuMI | TCGCGA | 1 cut(s) | 1593 |
| BveI | ACCTGC | 2 cut(s) | 1150, 1534 |
| CfoI | GCGC | 8 cut(s) | 457, 462, 817, 982, 1030, 1169, 1186, 1827 |
| Cfr10I | RCCGGY | 6 cut(s) | 40, 187, 275, 422, 1030, 1192 |
| Cfr42I | CCGCGG | 1 cut(s) | 828 |
| ClaI | ATCGAT | 1 cut(s) | 1509 |
| CseI | GACGC | 2 cut(s) | 1262, 1609 |
| Csp6I | GTAC | 4 cut(s) | 232, 524, 1313, 1446 |
| CspAI | ACCGGT | 3 cut(s) | 40, 275, 1192 |
| CviAII | CATG | 4 cut(s) | 64, 299, 626, 764 |
| CviQI | GTAC | 4 cut(s) | 232, 524, 1313, 1446 |
| DdeI | CTNAG | 8 cut(s) | 252, 871, 1042, 1107, 1218, 1743, 1768, 1782 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1374, 1676 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1374, 1676 |
| EaeI | YGGCCR | 5 cut(s) | 16, 189, 424, 466, 492 |
| EagI | CGGCCG | 3 cut(s) | 16, 189, 424 |
| Eam1104I | CTCTTC | 1 cut(s) | 784 |
| EarI | CTCTTC | 1 cut(s) | 784 |
| EciI | GGCGGA | 2 cut(s) | 149, 384 |
| Ecl136II | GAGCTC | 1 cut(s) | 1412 |
| EclXI | CGGCCG | 3 cut(s) | 16, 189, 424 |
| Eco130I | CCWWGG | 3 cut(s) | 463, 635, 1695 |
| Eco24I | GRGCYC | 8 cut(s) | 33, 55, 268, 290, 833, 1026, 1113, 1414 |
| Eco32I | GATATC | 2 cut(s) | 172, 407 |
| Eco47I | GGWCC | 4 cut(s) | 1190, 1376, 1546, 1678 |
| Eco52I | CGGCCG | 3 cut(s) | 16, 189, 424 |
| Eco53kI | GAGCTC | 1 cut(s) | 1412 |
| Eco57I | CTGAAG | 3 cut(s) | 552, 564, 765 |
| Eco72I | CACGTG | 1 cut(s) | 1802 |
| Eco81I | CCTNAGG | 1 cut(s) | 1218 |
| Eco88I | CYCGRG | 1 cut(s) | 810 |
| EcoICRI | GAGCTC | 1 cut(s) | 1412 |
| EcoO109I | RGGNCCY | 7 cut(s) | 51, 52, 286, 287, 753, 830, 1376 |
| EcoRII | CCWGG | 7 cut(s) | 505, 749, 1003, 1330, 1371, 1674, 1841 |
| EcoRV | GATATC | 2 cut(s) | 172, 407 |
| EcoT14I | CCWWGG | 3 cut(s) | 463, 635, 1695 |
| EcoT22I | ATGCAT | 2 cut(s) | 87, 322 |
| EcoT38I | GRGCYC | 8 cut(s) | 33, 55, 268, 290, 833, 1026, 1113, 1414 |
| ErhI | CCWWGG | 3 cut(s) | 463, 635, 1695 |
| FaeI | CATG | 4 cut(s) | 67, 302, 629, 767 |
| FaqI | GGGAC | 5 cut(s) | 732, 1058, 1203, 1236, 1367 |
| FatI | CATG | 4 cut(s) | 63, 298, 625, 763 |
| FauI | CCCGC | 8 cut(s) | 183, 192, 418, 427, 820, 832, 1033, 1120 |
| FblI | GTMKAC | 1 cut(s) | 1251 |
| FokI | GGATG | 2 cut(s) | 72, 307 |
| FriOI | GRGCYC | 8 cut(s) | 33, 55, 268, 290, 833, 1026, 1113, 1414 |
| FspBI | CTAG | 2 cut(s) | 789, 1601 |
| GlaI | GCGC | 8 cut(s) | 456, 461, 816, 981, 1029, 1168, 1185, 1826 |
| GsaI | CCCAGC | 1 cut(s) | 771 |
| GsuI | CTGGAG | 3 cut(s) | 1316, 1658, 1825 |
| HaeII | RGCGCY | 3 cut(s) | 818, 1170, 1187 |
| HgaI | GACGC | 2 cut(s) | 1262, 1609 |
| HhaI | GCGC | 8 cut(s) | 457, 462, 817, 982, 1030, 1169, 1186, 1827 |
| Hin1I | GRCGYC | 1 cut(s) | 1254 |
| Hin1II | CATG | 4 cut(s) | 67, 302, 629, 767 |
| Hin6I | GCGC | 8 cut(s) | 455, 460, 815, 980, 1028, 1167, 1184, 1825 |
| HinP1I | GCGC | 8 cut(s) | 455, 460, 815, 980, 1028, 1167, 1184, 1825 |
| HincII | GTYRAC | 1 cut(s) | 1252 |
| HindII | GTYRAC | 1 cut(s) | 1252 |
| HinfI | GANTC | 6 cut(s) | 548, 1132, 1368, 1595, 1615, 1657 |
| HphI | GGTGA | 2 cut(s) | 1019, 1130 |
| Hpy166II | GTNNAC | 1 cut(s) | 1252 |
| Hpy8I | GTNNAC | 1 cut(s) | 1252 |
| Hpy99I | CGWCG | 3 cut(s) | 572, 1214, 1256 |
| HpyCH4III | ACNGT | 1 cut(s) | 583 |
| HpyCH4IV | ACGT | 6 cut(s) | 102, 337, 1071, 1266, 1444, 1801 |
| HpyF3I | CTNAG | 8 cut(s) | 252, 871, 1042, 1107, 1218, 1743, 1768, 1782 |
| HpySE526I | ACGT | 6 cut(s) | 102, 337, 1071, 1266, 1444, 1801 |
| Hsp92I | GRCGYC | 1 cut(s) | 1254 |
| Hsp92II | CATG | 4 cut(s) | 67, 302, 629, 767 |
| HspAI | GCGC | 8 cut(s) | 455, 460, 815, 980, 1028, 1167, 1184, 1825 |
| KroI | GCCGGC | 2 cut(s) | 187, 422 |
| KroNI | GCCGGC | 2 cut(s) | 189, 424 |
| KspI | CCGCGG | 1 cut(s) | 828 |
| LguI | GCTCTTC | 1 cut(s) | 784 |
| LmnI | GCTCC | 2 cut(s) | 1330, 1729 |
| LweI | GCATC | 5 cut(s) | 72, 94, 307, 329, 995 |
| MaeI | CTAG | 2 cut(s) | 789, 1601 |
| MaeII | ACGT | 6 cut(s) | 102, 337, 1071, 1266, 1444, 1801 |
| MaeIII | GTNAC | 3 cut(s) | 1067, 1714, 1834 |
| MfeI | CAATTG | 4 cut(s) | 197, 432, 1703, 1724 |
| MflI | RGATCY | 5 cut(s) | 135, 370, 955, 1627, 1635 |
| MlsI | TGGCCA | 1 cut(s) | 468 |
| MluCI | AATT | 6 cut(s) | 197, 432, 696, 1463, 1703, 1724 |
| MluNI | TGGCCA | 1 cut(s) | 468 |
| MlyI | GAGTC | 3 cut(s) | 1362, 1589, 1651 |
| MmeI | TCCRAC | 1 cut(s) | 1705 |
| Mox20I | TGGCCA | 1 cut(s) | 468 |
| Mph1103I | ATGCAT | 2 cut(s) | 87, 322 |
| MroNI | GCCGGC | 2 cut(s) | 187, 422 |
| MscI | TGGCCA | 1 cut(s) | 468 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1832 |
| Msp20I | TGGCCA | 1 cut(s) | 468 |
| MspA1I | CMGCKG | 5 cut(s) | 497, 542, 785, 827, 1115 |
| MteI | GCGCNGCGC | 1 cut(s) | 458 |
| MunI | CAATTG | 4 cut(s) | 197, 432, 1703, 1724 |
| MvaI | CCWGG | 7 cut(s) | 507, 751, 1005, 1332, 1373, 1676, 1843 |
| NaeI | GCCGGC | 2 cut(s) | 189, 424 |
| NciI | CCSGG | 3 cut(s) | 939, 1188, 1395 |
| NgoMIV | GCCGGC | 2 cut(s) | 187, 422 |
| NlaIII | CATG | 4 cut(s) | 67, 302, 629, 767 |
| NmuCI | GTSAC | 2 cut(s) | 1714, 1834 |
| NruI | TCGCGA | 1 cut(s) | 1593 |
| NsiI | ATGCAT | 2 cut(s) | 87, 322 |
| NspI | RCATGY | 3 cut(s) | 67, 302, 767 |
| PaeI | GCATGC | 2 cut(s) | 67, 302 |
| PaeR7I | CTCGAG | 1 cut(s) | 810 |
| PasI | CCCWGGG | 1 cut(s) | 1331 |
| PciSI | GCTCTTC | 1 cut(s) | 784 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 99, 334, 990 |
| PdiI | GCCGGC | 2 cut(s) | 189, 424 |
| PfeI | GAWTC | 3 cut(s) | 548, 1132, 1615 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1708 |
| PinAI | ACCGGT | 3 cut(s) | 40, 275, 1192 |
| Ple19I | CGATCG | 2 cut(s) | 963, 1609 |
| PleI | GAGTC | 3 cut(s) | 1362, 1589, 1651 |
| PmaCI | CACGTG | 1 cut(s) | 1802 |
| PmlI | CACGTG | 1 cut(s) | 1802 |
| PpsI | GAGTC | 3 cut(s) | 1362, 1589, 1651 |
| Ppu21I | YACGTR | 1 cut(s) | 1802 |
| PpuMI | RGGWCCY | 1 cut(s) | 1376 |
| Psp124BI | GAGCTC | 1 cut(s) | 1414 |
| Psp1406I | AACGTT | 2 cut(s) | 102, 337 |
| Psp5II | RGGWCCY | 1 cut(s) | 1376 |
| Psp6I | CCWGG | 7 cut(s) | 505, 749, 1003, 1330, 1371, 1674, 1841 |
| PspCI | CACGTG | 1 cut(s) | 1802 |
| PspFI | CCCAGC | 1 cut(s) | 767 |
| PspGI | CCWGG | 7 cut(s) | 505, 749, 1003, 1330, 1371, 1674, 1841 |
| PspOMI | GGGCCC | 3 cut(s) | 51, 286, 829 |
| PspPPI | RGGWCCY | 1 cut(s) | 1376 |
| PstI | CTGCAG | 2 cut(s) | 541, 1081 |
| PsuI | RGATCY | 5 cut(s) | 135, 370, 955, 1627, 1635 |
| PvuI | CGATCG | 2 cut(s) | 963, 1609 |
| PvuII | CAGCTG | 2 cut(s) | 542, 785 |
| RruI | TCGCGA | 1 cut(s) | 1593 |
| RsaI | GTAC | 4 cut(s) | 233, 525, 1314, 1447 |
| RsaNI | GTAC | 4 cut(s) | 232, 524, 1313, 1446 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1832 |
| SacI | GAGCTC | 1 cut(s) | 1414 |
| SacII | CCGCGG | 1 cut(s) | 828 |
| SalI | GTCGAC | 1 cut(s) | 1250 |
| SapI | GCTCTTC | 1 cut(s) | 784 |
| ScaI | AGTACT | 2 cut(s) | 233, 525 |
| SchI | GAGTC | 3 cut(s) | 1362, 1589, 1651 |
| SfaNI | GCATC | 5 cut(s) | 72, 94, 307, 329, 995 |
| SfcI | CTRYAG | 3 cut(s) | 537, 594, 1077 |
| Sfr274I | CTCGAG | 1 cut(s) | 810 |
| Sfr303I | CCGCGG | 1 cut(s) | 828 |
| SgrBI | CCGCGG | 1 cut(s) | 828 |
| SinI | GGWCC | 4 cut(s) | 1190, 1376, 1546, 1678 |
| SlaI | CTCGAG | 1 cut(s) | 810 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1832 |
| SmlI | CTYRAG | 5 cut(s) | 810, 950, 1017, 1413, 1794 |
| SmoI | CTYRAG | 5 cut(s) | 810, 950, 1017, 1413, 1794 |
| SphI | GCATGC | 2 cut(s) | 67, 302 |
| Sse9I | AATT | 6 cut(s) | 197, 432, 696, 1463, 1703, 1724 |
| SspMI | CTAG | 2 cut(s) | 789, 1601 |
| SstI | GAGCTC | 1 cut(s) | 1414 |
| StyI | CCWWGG | 3 cut(s) | 463, 635, 1695 |
| TaaI | ACNGT | 1 cut(s) | 583 |
| TaiI | ACGT | 6 cut(s) | 105, 340, 1074, 1269, 1447, 1804 |
| TaqII | GACCGA | 1 cut(s) | 678 |
| TasI | AATT | 6 cut(s) | 197, 432, 696, 1463, 1703, 1724 |
| TatI | WGTACW | 2 cut(s) | 231, 523 |
| TauI | GCSGC | 9 cut(s) | 21, 165, 400, 460, 497, 593, 1406, 1440, 1566 |
| TfiI | GAWTC | 3 cut(s) | 548, 1132, 1615 |
| TscAI | CASTG | 3 cut(s) | 487, 495, 865 |
| TseFI | GTSAC | 2 cut(s) | 1714, 1834 |
| Tsp45I | GTSAC | 2 cut(s) | 1714, 1834 |
| TspDTI | ATGAA | 6 cut(s) | 140, 375, 663, 927, 1359, 1527 |
| TspGWI | ACGGA | 3 cut(s) | 932, 1519, 1648 |
| TspRI | CASTG | 3 cut(s) | 487, 495, 865 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1708 |
| VpaK11BI | GGWCC | 4 cut(s) | 1190, 1376, 1546, 1678 |
| XapI | RAATTY | 1 cut(s) | 1463 |
| XceI | RCATGY | 3 cut(s) | 67, 302, 767 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 487, 1702 |
| XhoI | CTCGAG | 1 cut(s) | 810 |
| XmiI | GTMKAC | 1 cut(s) | 1251 |
| XspI | CTAG | 2 cut(s) | 789, 1601 |
| ZrmI | AGTACT | 2 cut(s) | 233, 525 |
| Zsp2I | ATGCAT | 2 cut(s) | 87, 322 |