Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 368 |
| AccB1I | GGYRCC | 2 cut(s) | 83, 269 |
| AccI | GTMKAC | 1 cut(s) | 220 |
| AccII | CGCG | 2 cut(s) | 355, 420 |
| AciI | CCGC | 4 cut(s) | 88, 167, 420, 687 |
| AcoI | YGGCCR | 2 cut(s) | 183, 302 |
| AfaI | GTAC | 2 cut(s) | 733, 757 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 114, 294, 551 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AluBI | AGCT | 1 cut(s) | 264 |
| AluI | AGCT | 1 cut(s) | 264 |
| Alw21I | GWGCWC | 1 cut(s) | 675 |
| Alw26I | GTCTC | 2 cut(s) | 9, 101 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 264 |
| AoxI | GGCC | 4 cut(s) | 116, 158, 183, 302 |
| ApeKI | GCWGC | 2 cut(s) | 374, 443 |
| AspLEI | GCGC | 2 cut(s) | 166, 355 |
| AsuHPI | GGTGA | 4 cut(s) | 502, 526, 580, 586 |
| BaeGI | GKGCMC | 3 cut(s) | 88, 274, 300 |
| BanI | GGYRCC | 2 cut(s) | 83, 269 |
| BbsI | GAAGAC | 1 cut(s) | 404 |
| Bbv12I | GWGCWC | 1 cut(s) | 675 |
| BbvI | GCAGC | 2 cut(s) | 386, 430 |
| BccI | CCATC | 5 cut(s) | 116, 539, 545, 554, 642 |
| BceAI | ACGGC | 1 cut(s) | 289 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BcoDI | GTCTC | 2 cut(s) | 9, 101 |
| BfoI | RGCGCY | 1 cut(s) | 167 |
| BfuAI | ACCTGC | 1 cut(s) | 368 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BisI | GCNGC | 4 cut(s) | 167, 375, 421, 444 |
| BlsI | GCNGC | 4 cut(s) | 168, 376, 422, 445 |
| BmiI | GGNNCC | 4 cut(s) | 73, 85, 271, 637 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BpiI | GAAGAC | 1 cut(s) | 404 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 549 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 603 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 620, 650 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 66, 67, 114, 294, 551 |
| Bse118I | RCCGGY | 1 cut(s) | 536 |
| Bse1I | ACTGG | 4 cut(s) | 230, 305, 522, 757 |
| Bse3DI | GCAATG | 1 cut(s) | 628 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseCI | ATCGAT | 2 cut(s) | 27, 549 |
| BseDI | CCNNGG | 1 cut(s) | 603 |
| BseGI | GGATG | 3 cut(s) | 104, 108, 178 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 114, 294, 551 |
| BseMI | GCAATG | 1 cut(s) | 628 |
| BseMII | CTCAG | 1 cut(s) | 150 |
| BseNI | ACTGG | 4 cut(s) | 230, 305, 522, 757 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BseSI | GKGCMC | 3 cut(s) | 88, 274, 300 |
| BseX3I | CGGCCG | 1 cut(s) | 183 |
| BseXI | GCAGC | 2 cut(s) | 386, 430 |
| BseYI | CCCAGC | 2 cut(s) | 264, 319 |
| Bsh1236I | CGCG | 2 cut(s) | 355, 420 |
| Bsh1285I | CGRYCG | 2 cut(s) | 186, 684 |
| BshFI | GGCC | 4 cut(s) | 118, 160, 185, 304 |
| BshNI | GGYRCC | 2 cut(s) | 83, 269 |
| BshVI | ATCGAT | 2 cut(s) | 27, 549 |
| BsiEI | CGRYCG | 2 cut(s) | 186, 684 |
| BsiHKAI | GWGCWC | 1 cut(s) | 675 |
| BsiSI | CCGG | 2 cut(s) | 182, 537 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 114, 294, 551 |
| BsmAI | GTCTC | 2 cut(s) | 9, 101 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| BsnI | GGCC | 4 cut(s) | 118, 160, 185, 304 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 274, 300, 675 |
| Bsp143I | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| Bsp19I | CCATGG | 1 cut(s) | 603 |
| BspACI | CCGC | 4 cut(s) | 88, 167, 420, 687 |
| BspANI | GGCC | 4 cut(s) | 118, 160, 185, 304 |
| BspCNI | CTCAG | 1 cut(s) | 149 |
| BspDI | ATCGAT | 2 cut(s) | 27, 549 |
| BspFNI | CGCG | 2 cut(s) | 355, 420 |
| BspLI | GGNNCC | 4 cut(s) | 73, 85, 271, 637 |
| BspMI | ACCTGC | 1 cut(s) | 368 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 269 |
| BsrDI | GCAATG | 1 cut(s) | 628 |
| BsrFI | RCCGGY | 1 cut(s) | 536 |
| BsrI | ACTGG | 4 cut(s) | 230, 305, 522, 757 |
| BssAI | RCCGGY | 1 cut(s) | 536 |
| BssECI | CCNNGG | 1 cut(s) | 603 |
| BssMI | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| BssT1I | CCWWGG | 1 cut(s) | 603 |
| Bst4CI | ACNGT | 2 cut(s) | 632, 665 |
| BstC8I | GCNNGC | 5 cut(s) | 88, 162, 209, 557, 746 |
| BstDEI | CTNAG | 2 cut(s) | 136, 700 |
| BstDSI | CCRYGG | 1 cut(s) | 603 |
| BstF5I | GGATG | 3 cut(s) | 104, 108, 178 |
| BstFNI | CGCG | 2 cut(s) | 355, 420 |
| BstH2I | RGCGCY | 1 cut(s) | 167 |
| BstHHI | GCGC | 2 cut(s) | 166, 355 |
| BstKTI | GATC | 5 cut(s) | 31, 142, 361, 400, 684 |
| BstMAI | GTCTC | 2 cut(s) | 9, 101 |
| BstMBI | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| BstMCI | CGRYCG | 2 cut(s) | 186, 684 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 166, 182, 371 |
| BstSLI | GKGCMC | 3 cut(s) | 88, 274, 300 |
| BstUI | CGCG | 2 cut(s) | 355, 420 |
| BstV1I | GCAGC | 2 cut(s) | 386, 430 |
| BstV2I | GAAGAC | 1 cut(s) | 404 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| BstZI | CGGCCG | 1 cut(s) | 183 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 549 |
| BsuRI | GGCC | 4 cut(s) | 118, 160, 185, 304 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 549 |
| BtgI | CCRYGG | 1 cut(s) | 603 |
| BtsCI | GGATG | 3 cut(s) | 104, 108, 178 |
| BtsIMutI | CAGTG | 3 cut(s) | 298, 637, 750 |
| BveI | ACCTGC | 1 cut(s) | 368 |
| Cac8I | GCNNGC | 5 cut(s) | 88, 162, 209, 557, 746 |
| CaiI | CAGNNNCTG | 1 cut(s) | 264 |
| CfoI | GCGC | 2 cut(s) | 166, 355 |
| Cfr10I | RCCGGY | 1 cut(s) | 536 |
| ClaI | ATCGAT | 2 cut(s) | 27, 549 |
| Csp6I | GTAC | 2 cut(s) | 732, 756 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 633, 668 |
| CviAII | CATG | 4 cut(s) | 146, 569, 604, 614 |
| CviQI | GTAC | 2 cut(s) | 732, 756 |
| DdeI | CTNAG | 2 cut(s) | 136, 700 |
| DpnI | GATC | 5 cut(s) | 30, 141, 360, 399, 683 |
| DpnII | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| EaeI | YGGCCR | 2 cut(s) | 183, 302 |
| EagI | CGGCCG | 1 cut(s) | 183 |
| EciI | GGCGGA | 1 cut(s) | 702 |
| EclXI | CGGCCG | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 1 cut(s) | 603 |
| Eco147I | AGGCCT | 1 cut(s) | 118 |
| Eco52I | CGGCCG | 1 cut(s) | 183 |
| EcoT14I | CCWWGG | 1 cut(s) | 603 |
| ErhI | CCWWGG | 1 cut(s) | 603 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 4 cut(s) | 149, 572, 607, 617 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 710, 742 |
| FatI | CATG | 4 cut(s) | 145, 568, 603, 613 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FblI | GTMKAC | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 4 cut(s) | 167, 375, 421, 444 |
| FokI | GGATG | 3 cut(s) | 91, 95, 185 |
| Fsp4HI | GCNGC | 4 cut(s) | 167, 375, 421, 444 |
| GlaI | GCGC | 2 cut(s) | 165, 354 |
| GluI | GCNGC | 4 cut(s) | 167, 375, 421, 444 |
| GsaI | CCCAGC | 2 cut(s) | 268, 323 |
| HaeII | RGCGCY | 1 cut(s) | 167 |
| HaeIII | GGCC | 4 cut(s) | 118, 160, 185, 304 |
| HapII | CCGG | 2 cut(s) | 182, 537 |
| HhaI | GCGC | 2 cut(s) | 166, 355 |
| Hin1II | CATG | 4 cut(s) | 149, 572, 607, 617 |
| Hin6I | GCGC | 2 cut(s) | 164, 353 |
| HinP1I | GCGC | 2 cut(s) | 164, 353 |
| HincII | GTYRAC | 1 cut(s) | 221 |
| HindII | GTYRAC | 1 cut(s) | 221 |
| HinfI | GANTC | 3 cut(s) | 244, 581, 690 |
| HpaII | CCGG | 2 cut(s) | 182, 537 |
| HphI | GGTGA | 4 cut(s) | 502, 526, 580, 586 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 152, 239 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 341, 460, 668 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| Hpy99I | CGWCG | 1 cut(s) | 222 |
| HpyAV | CCTTC | 2 cut(s) | 234, 601 |
| HpyCH4III | ACNGT | 2 cut(s) | 632, 665 |
| HpyCH4V | TGCA | 2 cut(s) | 717, 744 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 166, 182, 371 |
| HpyF3I | CTNAG | 2 cut(s) | 136, 700 |
| Hsp92II | CATG | 4 cut(s) | 149, 572, 607, 617 |
| HspAI | GCGC | 2 cut(s) | 164, 353 |
| Kzo9I | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| LmnI | GCTCC | 3 cut(s) | 129, 641, 670 |
| Lsp1109I | GCAGC | 2 cut(s) | 386, 430 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeIII | GTNAC | 1 cut(s) | 586 |
| MalI | GATC | 5 cut(s) | 30, 141, 360, 399, 683 |
| MboI | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| MboII | GAAGA | 5 cut(s) | 25, 28, 50, 404, 718 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 4 cut(s) | 88, 274, 300, 675 |
| MluCI | AATT | 4 cut(s) | 41, 54, 131, 575 |
| MlyI | GAGTC | 1 cut(s) | 238 |
| MmeI | TCCRAC | 1 cut(s) | 130 |
| MnlI | CCTC | 7 cut(s) | 28, 137, 245, 319, 478, 607, 748 |
| MseI | TTAA | 1 cut(s) | 155 |
| MspI | CCGG | 2 cut(s) | 182, 537 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvnI | CGCG | 2 cut(s) | 355, 420 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 166, 182, 371 |
| NcoI | CCATGG | 1 cut(s) | 603 |
| NdeII | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| NlaIII | CATG | 4 cut(s) | 149, 572, 607, 617 |
| NlaIV | GGNNCC | 4 cut(s) | 73, 85, 271, 637 |
| NmuCI | GTSAC | 1 cut(s) | 586 |
| PceI | AGGCCT | 1 cut(s) | 118 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 2 cut(s) | 581, 690 |
| PkrI | GCNGC | 4 cut(s) | 168, 376, 422, 445 |
| Ple19I | CGATCG | 1 cut(s) | 684 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| PspFI | CCCAGC | 2 cut(s) | 264, 319 |
| PspN4I | GGNNCC | 4 cut(s) | 73, 85, 271, 637 |
| PstNI | CAGNNNCTG | 1 cut(s) | 264 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| PvuI | CGATCG | 1 cut(s) | 684 |
| RsaI | GTAC | 2 cut(s) | 733, 757 |
| RsaNI | GTAC | 2 cut(s) | 732, 756 |
| SalI | GTCGAC | 1 cut(s) | 219 |
| SaqAI | TTAA | 1 cut(s) | 155 |
| SatI | GCNGC | 4 cut(s) | 167, 375, 421, 444 |
| Sau3AI | GATC | 5 cut(s) | 28, 139, 358, 397, 681 |
| SchI | GAGTC | 1 cut(s) | 238 |
| SduI | GDGCHC | 4 cut(s) | 88, 274, 300, 675 |
| SetI | ASST | 5 cut(s) | 266, 382, 470, 593, 599 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| Sse9I | AATT | 4 cut(s) | 41, 54, 131, 575 |
| SseBI | AGGCCT | 1 cut(s) | 118 |
| SsiI | CCGC | 4 cut(s) | 88, 167, 420, 687 |
| StuI | AGGCCT | 1 cut(s) | 118 |
| StyI | CCWWGG | 1 cut(s) | 603 |
| TaaI | ACNGT | 2 cut(s) | 632, 665 |
| TaqI | TCGA | 6 cut(s) | 27, 220, 340, 483, 549, 599 |
| TasI | AATT | 4 cut(s) | 41, 54, 131, 575 |
| TatI | WGTACW | 1 cut(s) | 731 |
| TauI | GCSGC | 2 cut(s) | 169, 423 |
| TfiI | GAWTC | 2 cut(s) | 581, 690 |
| Tru1I | TTAA | 1 cut(s) | 155 |
| Tru9I | TTAA | 1 cut(s) | 155 |
| TscAI | CASTG | 3 cut(s) | 305, 637, 757 |
| TseFI | GTSAC | 1 cut(s) | 586 |
| TseI | GCWGC | 2 cut(s) | 374, 443 |
| Tsp45I | GTSAC | 1 cut(s) | 586 |
| TspDTI | ATGAA | 1 cut(s) | 712 |
| TspGWI | ACGGA | 2 cut(s) | 206, 398 |
| TspRI | CASTG | 3 cut(s) | 305, 637, 757 |
| XmiI | GTMKAC | 1 cut(s) | 220 |