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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 93, 222, 465 |
| AciI | CCGC | 3 cut(s) | 316, 425, 470 |
| AclWI | GGATC | 1 cut(s) | 326 |
| AcuI | CTGAAG | 1 cut(s) | 341 |
| AfaI | GTAC | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 243, 244, 481 |
| AgsI | TTSAA | 1 cut(s) | 26 |
| AjnI | CCWGG | 1 cut(s) | 131 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 513, 545 |
| AluBI | AGCT | 3 cut(s) | 29, 455, 461 |
| AluI | AGCT | 3 cut(s) | 29, 455, 461 |
| Alw26I | GTCTC | 3 cut(s) | 164, 303, 447 |
| AlwI | GGATC | 1 cut(s) | 326 |
| AoxI | GGCC | 5 cut(s) | 247, 360, 381, 426, 547 |
| ApeKI | GCWGC | 4 cut(s) | 35, 38, 41, 172 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 513, 545 |
| AspS9I | GGNCC | 5 cut(s) | 247, 339, 361, 382, 472 |
| AsuC2I | CCSGG | 1 cut(s) | 385 |
| AsuHPI | GGTGA | 1 cut(s) | 115 |
| AvaII | GGWCC | 2 cut(s) | 339, 472 |
| BanII | GRGCYC | 1 cut(s) | 196 |
| BbvI | GCAGC | 4 cut(s) | 22, 25, 28, 159 |
| BccI | CCATC | 2 cut(s) | 131, 153 |
| BceAI | ACGGC | 1 cut(s) | 396 |
| BciT130I | CCWGG | 1 cut(s) | 133 |
| BcnI | CCSGG | 1 cut(s) | 385 |
| BcoDI | GTCTC | 3 cut(s) | 164, 303, 447 |
| BfaI | CTAG | 4 cut(s) | 72, 86, 422, 452 |
| BglII | AGATCT | 1 cut(s) | 352 |
| BisI | GCNGC | 5 cut(s) | 36, 39, 42, 173, 426 |
| BlsI | GCNGC | 5 cut(s) | 37, 40, 43, 174, 427 |
| Bme1390I | CCNGG | 2 cut(s) | 133, 385 |
| Bme18I | GGWCC | 2 cut(s) | 339, 472 |
| BmgT120I | GGNCC | 5 cut(s) | 247, 339, 361, 382, 472 |
| BmiI | GGNNCC | 5 cut(s) | 6, 18, 248, 341, 402 |
| BmrFI | CCNGG | 2 cut(s) | 133, 385 |
| BmsI | GCATC | 2 cut(s) | 191, 490 |
| BpmI | CTGGAG | 1 cut(s) | 431 |
| BpuEI | CTTGAG | 4 cut(s) | 119, 226, 410, 441 |
| BpuMI | CCSGG | 1 cut(s) | 385 |
| BsaJI | CCNNGG | 1 cut(s) | 132 |
| BsaWI | WCCGGW | 1 cut(s) | 336 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 243, 244, 481 |
| Bse1I | ACTGG | 1 cut(s) | 504 |
| Bse3DI | GCAATG | 1 cut(s) | 492 |
| BseBI | CCWGG | 1 cut(s) | 133 |
| BseDI | CCNNGG | 1 cut(s) | 132 |
| BseGI | GGATG | 2 cut(s) | 142, 182 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 243, 244, 481 |
| BseMI | GCAATG | 1 cut(s) | 492 |
| BseMII | CTCAG | 1 cut(s) | 458 |
| BseNI | ACTGG | 1 cut(s) | 504 |
| BseRI | GAGGAG | 1 cut(s) | 259 |
| BseXI | GCAGC | 4 cut(s) | 22, 25, 28, 159 |
| Bsh1236I | CGCG | 3 cut(s) | 93, 222, 465 |
| BshFI | GGCC | 5 cut(s) | 249, 362, 383, 428, 549 |
| BsiSI | CCGG | 2 cut(s) | 337, 385 |
| BslFI | GGGAC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 243, 244, 481 |
| BsmAI | GTCTC | 3 cut(s) | 164, 303, 447 |
| BsmFI | GGGAC | 1 cut(s) | 325 |
| BsnI | GGCC | 5 cut(s) | 249, 362, 383, 428, 549 |
| Bsp1286I | GDGCHC | 1 cut(s) | 196 |
| Bsp143I | GATC | 2 cut(s) | 318, 352 |
| Bsp68I | TCGCGA | 2 cut(s) | 222, 465 |
| BspACI | CCGC | 3 cut(s) | 316, 425, 470 |
| BspANI | GGCC | 5 cut(s) | 249, 362, 383, 428, 549 |
| BspCNI | CTCAG | 1 cut(s) | 457 |
| BspFNI | CGCG | 3 cut(s) | 93, 222, 465 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 5 cut(s) | 6, 18, 248, 341, 402 |
| BspPI | GGATC | 1 cut(s) | 326 |
| BsrDI | GCAATG | 1 cut(s) | 492 |
| BsrI | ACTGG | 1 cut(s) | 504 |
| BssECI | CCNNGG | 1 cut(s) | 132 |
| BssMI | GATC | 2 cut(s) | 318, 352 |
| Bst2UI | CCWGG | 1 cut(s) | 133 |
| Bst4CI | ACNGT | 1 cut(s) | 376 |
| BstC8I | GCNNGC | 3 cut(s) | 463, 489, 547 |
| BstDEI | CTNAG | 1 cut(s) | 444 |
| BstF5I | GGATG | 2 cut(s) | 142, 182 |
| BstFNI | CGCG | 3 cut(s) | 93, 222, 465 |
| BstKTI | GATC | 2 cut(s) | 321, 355 |
| BstMAI | GTCTC | 3 cut(s) | 164, 303, 447 |
| BstMBI | GATC | 2 cut(s) | 318, 352 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 35, 41, 467 |
| BstNI | CCWGG | 1 cut(s) | 133 |
| BstSCI | CCNGG | 2 cut(s) | 131, 383 |
| BstUI | CGCG | 3 cut(s) | 93, 222, 465 |
| BstV1I | GCAGC | 4 cut(s) | 22, 25, 28, 159 |
| BstX2I | RGATCY | 1 cut(s) | 352 |
| BstYI | RGATCY | 1 cut(s) | 352 |
| BsuRI | GGCC | 5 cut(s) | 249, 362, 383, 428, 549 |
| BtsCI | GGATG | 2 cut(s) | 142, 182 |
| BtuMI | TCGCGA | 2 cut(s) | 222, 465 |
| Cac8I | GCNNGC | 3 cut(s) | 463, 489, 547 |
| CciI | TCATGA | 1 cut(s) | 274 |
| Cfr13I | GGNCC | 5 cut(s) | 247, 339, 361, 382, 472 |
| CpoI | CGGWCCG | 1 cut(s) | 472 |
| CseI | GACGC | 1 cut(s) | 188 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CspI | CGGWCCG | 1 cut(s) | 472 |
| CviAII | CATG | 4 cut(s) | 233, 275, 395, 542 |
| CviQI | GTAC | 1 cut(s) | 95 |
| DdeI | CTNAG | 1 cut(s) | 444 |
| DpnI | GATC | 2 cut(s) | 320, 354 |
| DpnII | GATC | 2 cut(s) | 318, 352 |
| Eco24I | GRGCYC | 1 cut(s) | 196 |
| Eco32I | GATATC | 1 cut(s) | 166 |
| Eco47I | GGWCC | 2 cut(s) | 339, 472 |
| Eco57I | CTGAAG | 1 cut(s) | 341 |
| EcoO109I | RGGNCCY | 1 cut(s) | 247 |
| EcoRII | CCWGG | 1 cut(s) | 131 |
| EcoRV | GATATC | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 1 cut(s) | 196 |
| FaeI | CATG | 4 cut(s) | 236, 278, 398, 545 |
| FaiI | YATR | 6 cut(s) | 122, 234, 276, 293, 396, 543 |
| FaqI | GGGAC | 1 cut(s) | 325 |
| FatI | CATG | 4 cut(s) | 232, 274, 394, 541 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 39, 42, 173, 426 |
| FokI | GGATG | 2 cut(s) | 149, 169 |
| FriOI | GRGCYC | 1 cut(s) | 196 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 39, 42, 173, 426 |
| FspBI | CTAG | 4 cut(s) | 72, 86, 422, 452 |
| GluI | GCNGC | 5 cut(s) | 36, 39, 42, 173, 426 |
| GsuI | CTGGAG | 1 cut(s) | 431 |
| HaeIII | GGCC | 5 cut(s) | 249, 362, 383, 428, 549 |
| HapII | CCGG | 2 cut(s) | 337, 385 |
| HgaI | GACGC | 1 cut(s) | 188 |
| Hin1II | CATG | 4 cut(s) | 236, 278, 398, 545 |
| HinfI | GANTC | 4 cut(s) | 106, 141, 157, 266 |
| HpaII | CCGG | 2 cut(s) | 337, 385 |
| HphI | GGTGA | 1 cut(s) | 115 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 433, 447, 476 |
| Hpy188III | TCNNGA | 7 cut(s) | 23, 72, 161, 197, 221, 275, 464 |
| Hpy99I | CGWCG | 1 cut(s) | 222 |
| HpyAV | CCTTC | 1 cut(s) | 120 |
| HpyCH4III | ACNGT | 1 cut(s) | 376 |
| HpyCH4V | TGCA | 1 cut(s) | 545 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 35, 41, 467 |
| HpyF3I | CTNAG | 1 cut(s) | 444 |
| Hsp92II | CATG | 4 cut(s) | 236, 278, 398, 545 |
| Kzo9I | GATC | 2 cut(s) | 318, 352 |
| LmnI | GCTCC | 3 cut(s) | 16, 412, 484 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 25, 28, 159 |
| LweI | GCATC | 2 cut(s) | 191, 490 |
| MaeI | CTAG | 4 cut(s) | 72, 86, 422, 452 |
| MaeIII | GTNAC | 2 cut(s) | 103, 376 |
| MalI | GATC | 2 cut(s) | 320, 354 |
| MboI | GATC | 2 cut(s) | 318, 352 |
| MboII | GAAGA | 2 cut(s) | 206, 347 |
| MfeI | CAATTG | 1 cut(s) | 365 |
| MflI | RGATCY | 1 cut(s) | 352 |
| MhlI | GDGCHC | 1 cut(s) | 196 |
| MluCI | AATT | 1 cut(s) | 365 |
| MlyI | GAGTC | 4 cut(s) | 100, 135, 166, 260 |
| MmeI | TCCRAC | 1 cut(s) | 499 |
| MnlI | CCTC | 8 cut(s) | 30, 75, 94, 260, 280, 391, 439, 460 |
| MseI | TTAA | 1 cut(s) | 536 |
| MspI | CCGG | 2 cut(s) | 337, 385 |
| MspR9I | CCNGG | 2 cut(s) | 133, 385 |
| MunI | CAATTG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 133 |
| MvnI | CGCG | 3 cut(s) | 93, 222, 465 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 35, 41, 467 |
| NciI | CCSGG | 1 cut(s) | 385 |
| NdeII | GATC | 2 cut(s) | 318, 352 |
| NlaIII | CATG | 4 cut(s) | 236, 278, 398, 545 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 18, 248, 341, 402 |
| NmuCI | GTSAC | 2 cut(s) | 103, 376 |
| NruI | TCGCGA | 2 cut(s) | 222, 465 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PkrI | GCNGC | 5 cut(s) | 37, 40, 43, 174, 427 |
| PleI | GAGTC | 4 cut(s) | 100, 135, 165, 260 |
| PpsI | GAGTC | 4 cut(s) | 100, 135, 165, 260 |
| Psp6I | CCWGG | 1 cut(s) | 131 |
| PspGI | CCWGG | 1 cut(s) | 131 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 18, 248, 341, 402 |
| PspPI | GGNCC | 5 cut(s) | 247, 339, 361, 382, 472 |
| PsuI | RGATCY | 1 cut(s) | 352 |
| RruI | TCGCGA | 2 cut(s) | 222, 465 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| Rsr2I | CGGWCCG | 1 cut(s) | 472 |
| RsrII | CGGWCCG | 1 cut(s) | 472 |
| SaqAI | TTAA | 1 cut(s) | 536 |
| SatI | GCNGC | 5 cut(s) | 36, 39, 42, 173, 426 |
| Sau3AI | GATC | 2 cut(s) | 318, 352 |
| Sau96I | GGNCC | 5 cut(s) | 247, 339, 361, 382, 472 |
| SchI | GAGTC | 4 cut(s) | 100, 135, 166, 260 |
| ScrFI | CCNGG | 2 cut(s) | 133, 385 |
| SduI | GDGCHC | 1 cut(s) | 196 |
| SetI | ASST | 6 cut(s) | 31, 105, 453, 457, 463, 483 |
| SfaNI | GCATC | 2 cut(s) | 191, 490 |
| SinI | GGWCC | 2 cut(s) | 339, 472 |
| SmlI | CTYRAG | 4 cut(s) | 98, 205, 389, 456 |
| SmoI | CTYRAG | 4 cut(s) | 98, 205, 389, 456 |
| Sse9I | AATT | 1 cut(s) | 365 |
| SsiI | CCGC | 3 cut(s) | 316, 425, 470 |
| SspI | AATATT | 1 cut(s) | 438 |
| SspMI | CTAG | 4 cut(s) | 72, 86, 422, 452 |
| StyD4I | CCNGG | 2 cut(s) | 131, 383 |
| TaaI | ACNGT | 1 cut(s) | 376 |
| TaqI | TCGA | 1 cut(s) | 162 |
| TasI | AATT | 1 cut(s) | 365 |
| TauI | GCSGC | 1 cut(s) | 428 |
| Tru1I | TTAA | 1 cut(s) | 536 |
| Tru9I | TTAA | 1 cut(s) | 536 |
| TseFI | GTSAC | 2 cut(s) | 103, 376 |
| TseI | GCWGC | 4 cut(s) | 35, 38, 41, 172 |
| Tsp45I | GTSAC | 2 cut(s) | 103, 376 |
| TspDTI | ATGAA | 1 cut(s) | 141 |
| TspGWI | ACGGA | 2 cut(s) | 175, 521 |
| VpaK11BI | GGWCC | 2 cut(s) | 339, 472 |
| XbaI | TCTAGA | 1 cut(s) | 71 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 511 |
| XspI | CTAG | 4 cut(s) | 72, 86, 422, 452 |