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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 227 |
| AccB1I | GGYRCC | 1 cut(s) | 37 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 667 |
| AccII | CGCG | 6 cut(s) | 294, 329, 372, 488, 577, 620 |
| AccIII | TCCGGA | 1 cut(s) | 65 |
| AclWI | GGATC | 2 cut(s) | 448, 588 |
| AcoI | YGGCCR | 4 cut(s) | 254, 378, 388, 609 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 20, 21, 34, 106, 174, 376, 648, 649, 667 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 536, 568 |
| AluBI | AGCT | 6 cut(s) | 121, 280, 500, 548, 571, 635 |
| AluI | AGCT | 6 cut(s) | 121, 280, 500, 548, 571, 635 |
| Alw26I | GTCTC | 4 cut(s) | 63, 389, 675, 708 |
| AlwI | GGATC | 2 cut(s) | 448, 588 |
| Ama87I | CYCGRG | 3 cut(s) | 425, 636, 678 |
| Aor13HI | TCCGGA | 1 cut(s) | 65 |
| ApaI | GGGCCC | 1 cut(s) | 643 |
| ApeKI | GCWGC | 2 cut(s) | 121, 571 |
| AscI | GGCGCGCC | 1 cut(s) | 486 |
| AspLEI | GCGC | 3 cut(s) | 228, 488, 490 |
| AspS9I | GGNCC | 5 cut(s) | 113, 465, 639, 640, 652 |
| AsuC2I | CCSGG | 2 cut(s) | 137, 301 |
| AsuHPI | GGTGA | 4 cut(s) | 89, 217, 421, 704 |
| AvaI | CYCGRG | 3 cut(s) | 425, 636, 678 |
| AvaII | GGWCC | 1 cut(s) | 113 |
| BaeGI | GKGCMC | 2 cut(s) | 42, 643 |
| BalI | TGGCCA | 2 cut(s) | 380, 611 |
| BanI | GGYRCC | 1 cut(s) | 37 |
| BanII | GRGCYC | 2 cut(s) | 426, 643 |
| BauI | CACGAG | 1 cut(s) | 235 |
| BbsI | GAAGAC | 2 cut(s) | 358, 441 |
| BbvI | GCAGC | 2 cut(s) | 108, 558 |
| BccI | CCATC | 6 cut(s) | 140, 176, 208, 265, 500, 661 |
| BceAI | ACGGC | 3 cut(s) | 175, 375, 479 |
| BciVI | GTATCC | 1 cut(s) | 519 |
| BcnI | CCSGG | 2 cut(s) | 137, 301 |
| BcoDI | GTCTC | 4 cut(s) | 63, 389, 675, 708 |
| BfaI | CTAG | 2 cut(s) | 308, 557 |
| BfuI | GTATCC | 1 cut(s) | 519 |
| BisI | GCNGC | 6 cut(s) | 11, 122, 254, 330, 572, 575 |
| BlsI | GCNGC | 6 cut(s) | 12, 123, 255, 331, 573, 576 |
| Bme1390I | CCNGG | 2 cut(s) | 137, 301 |
| Bme18I | GGWCC | 1 cut(s) | 113 |
| BmeT110I | CYCGRG | 3 cut(s) | 425, 636, 678 |
| BmgT120I | GGNCC | 5 cut(s) | 113, 465, 639, 640, 652 |
| BmiI | GGNNCC | 8 cut(s) | 26, 39, 114, 423, 467, 554, 641, 653 |
| BmrFI | CCNGG | 2 cut(s) | 137, 301 |
| BmrI | ACTGGG | 1 cut(s) | 29 |
| BmsI | GCATC | 2 cut(s) | 41, 59 |
| BmuI | ACTGGG | 1 cut(s) | 29 |
| BpiI | GAAGAC | 2 cut(s) | 358, 441 |
| BpuMI | CCSGG | 2 cut(s) | 137, 301 |
| BsaBI | GATNNNNATC | 1 cut(s) | 452 |
| BsaI | GGTCTC | 1 cut(s) | 63 |
| BsaJI | CCNNGG | 5 cut(s) | 284, 426, 457, 512, 575 |
| BsaWI | WCCGGW | 1 cut(s) | 65 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 20, 21, 34, 106, 174, 376, 648, 649, 667 |
| Bse118I | RCCGGY | 2 cut(s) | 174, 482 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse8I | GATNNNNATC | 1 cut(s) | 452 |
| BseAI | TCCGGA | 1 cut(s) | 65 |
| BseDI | CCNNGG | 5 cut(s) | 284, 426, 457, 512, 575 |
| BseGI | GGATG | 5 cut(s) | 50, 132, 168, 257, 702 |
| BseJI | GATNNNNATC | 1 cut(s) | 452 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 20, 21, 34, 106, 174, 376, 648, 649, 667 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BsePI | GCGCGC | 1 cut(s) | 486 |
| BseRI | GAGGAG | 2 cut(s) | 430, 664 |
| BseSI | GKGCMC | 2 cut(s) | 42, 643 |
| BseX3I | CGGCCG | 1 cut(s) | 388 |
| BseXI | GCAGC | 2 cut(s) | 108, 558 |
| Bsh1236I | CGCG | 6 cut(s) | 294, 329, 372, 488, 577, 620 |
| Bsh1285I | CGRYCG | 1 cut(s) | 391 |
| BshNI | GGYRCC | 1 cut(s) | 37 |
| BsiEI | CGRYCG | 1 cut(s) | 391 |
| BsiHKCI | CYCGRG | 3 cut(s) | 425, 636, 678 |
| BsiSI | CCGG | 5 cut(s) | 66, 137, 175, 301, 483 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 20, 21, 34, 106, 174, 376, 648, 649, 667 |
| BsmAI | GTCTC | 4 cut(s) | 63, 389, 675, 708 |
| BsmBI | CGTCTC | 1 cut(s) | 389 |
| Bso31I | GGTCTC | 1 cut(s) | 63 |
| BsoBI | CYCGRG | 3 cut(s) | 425, 636, 678 |
| Bsp120I | GGGCCC | 1 cut(s) | 639 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 426, 643 |
| Bsp13I | TCCGGA | 1 cut(s) | 65 |
| Bsp143I | GATC | 3 cut(s) | 351, 453, 580 |
| Bsp68I | TCGCGA | 1 cut(s) | 294 |
| BspEI | TCCGGA | 1 cut(s) | 65 |
| BspFNI | CGCG | 6 cut(s) | 294, 329, 372, 488, 577, 620 |
| BspLI | GGNNCC | 8 cut(s) | 26, 39, 114, 423, 467, 554, 641, 653 |
| BspPI | GGATC | 2 cut(s) | 448, 588 |
| BspT107I | GGYRCC | 1 cut(s) | 37 |
| BspTNI | GGTCTC | 1 cut(s) | 63 |
| BsrFI | RCCGGY | 2 cut(s) | 174, 482 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssAI | RCCGGY | 2 cut(s) | 174, 482 |
| BssECI | CCNNGG | 5 cut(s) | 284, 426, 457, 512, 575 |
| BssHII | GCGCGC | 1 cut(s) | 486 |
| BssMI | GATC | 3 cut(s) | 351, 453, 580 |
| BssSI | CACGAG | 1 cut(s) | 235 |
| Bst2BI | CACGAG | 1 cut(s) | 235 |
| Bst4CI | ACNGT | 2 cut(s) | 274, 385 |
| BstC8I | GCNNGC | 5 cut(s) | 42, 176, 488, 530, 534 |
| BstDEI | CTNAG | 1 cut(s) | 729 |
| BstDSI | CCRYGG | 2 cut(s) | 457, 575 |
| BstF5I | GGATG | 5 cut(s) | 50, 132, 168, 257, 702 |
| BstFNI | CGCG | 6 cut(s) | 294, 329, 372, 488, 577, 620 |
| BstHHI | GCGC | 3 cut(s) | 228, 488, 490 |
| BstKTI | GATC | 3 cut(s) | 354, 456, 583 |
| BstMAI | GTCTC | 4 cut(s) | 63, 389, 675, 708 |
| BstMBI | GATC | 3 cut(s) | 351, 453, 580 |
| BstMCI | CGRYCG | 1 cut(s) | 391 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 617, 632 |
| BstSCI | CCNGG | 2 cut(s) | 135, 299 |
| BstSLI | GKGCMC | 2 cut(s) | 42, 643 |
| BstUI | CGCG | 6 cut(s) | 294, 329, 372, 488, 577, 620 |
| BstV1I | GCAGC | 2 cut(s) | 108, 558 |
| BstV2I | GAAGAC | 2 cut(s) | 358, 441 |
| BstX2I | RGATCY | 1 cut(s) | 580 |
| BstYI | RGATCY | 1 cut(s) | 580 |
| BstZI | CGGCCG | 1 cut(s) | 388 |
| BsuI | GTATCC | 1 cut(s) | 519 |
| BtgI | CCRYGG | 2 cut(s) | 457, 575 |
| BtsCI | GGATG | 5 cut(s) | 50, 132, 168, 257, 702 |
| BtsIMutI | CAGTG | 1 cut(s) | 17 |
| BtuMI | TCGCGA | 1 cut(s) | 294 |
| Cac8I | GCNNGC | 5 cut(s) | 42, 176, 488, 530, 534 |
| CfoI | GCGC | 3 cut(s) | 228, 488, 490 |
| Cfr10I | RCCGGY | 2 cut(s) | 174, 482 |
| Cfr13I | GGNCC | 5 cut(s) | 113, 465, 639, 640, 652 |
| Cfr42I | CCGCGG | 1 cut(s) | 578 |
| CseI | GACGC | 2 cut(s) | 152, 313 |
| CviAII | CATG | 2 cut(s) | 101, 613 |
| DdeI | CTNAG | 1 cut(s) | 729 |
| DpnI | GATC | 3 cut(s) | 353, 455, 582 |
| DpnII | GATC | 3 cut(s) | 351, 453, 580 |
| EaeI | YGGCCR | 4 cut(s) | 254, 378, 388, 609 |
| EagI | CGGCCG | 1 cut(s) | 388 |
| EciI | GGCGGA | 2 cut(s) | 161, 337 |
| EclXI | CGGCCG | 1 cut(s) | 388 |
| Eco24I | GRGCYC | 2 cut(s) | 426, 643 |
| Eco31I | GGTCTC | 1 cut(s) | 63 |
| Eco47I | GGWCC | 1 cut(s) | 113 |
| Eco52I | CGGCCG | 1 cut(s) | 388 |
| Eco88I | CYCGRG | 3 cut(s) | 425, 636, 678 |
| EcoO109I | RGGNCCY | 1 cut(s) | 652 |
| EcoT38I | GRGCYC | 2 cut(s) | 426, 643 |
| Esp3I | CGTCTC | 1 cut(s) | 389 |
| FaeI | CATG | 2 cut(s) | 104, 616 |
| FaiI | YATR | 5 cut(s) | 56, 102, 357, 563, 614 |
| FatI | CATG | 2 cut(s) | 100, 612 |
| FauI | CCCGC | 4 cut(s) | 49, 97, 103, 570 |
| Fnu4HI | GCNGC | 6 cut(s) | 11, 122, 254, 330, 572, 575 |
| FokI | GGATG | 5 cut(s) | 37, 119, 155, 244, 689 |
| FriOI | GRGCYC | 2 cut(s) | 426, 643 |
| Fsp4HI | GCNGC | 6 cut(s) | 11, 122, 254, 330, 572, 575 |
| FspAI | RTGCGCAY | 1 cut(s) | 227 |
| FspBI | CTAG | 2 cut(s) | 308, 557 |
| FspI | TGCGCA | 1 cut(s) | 227 |
| GlaI | GCGC | 3 cut(s) | 227, 487, 489 |
| GluI | GCNGC | 6 cut(s) | 11, 122, 254, 330, 572, 575 |
| HapII | CCGG | 5 cut(s) | 66, 137, 175, 301, 483 |
| HgaI | GACGC | 2 cut(s) | 152, 313 |
| HhaI | GCGC | 3 cut(s) | 228, 488, 490 |
| Hin1II | CATG | 2 cut(s) | 104, 616 |
| Hin6I | GCGC | 3 cut(s) | 226, 486, 488 |
| HinP1I | GCGC | 3 cut(s) | 226, 486, 488 |
| HindIII | AAGCTT | 1 cut(s) | 498 |
| HinfI | GANTC | 5 cut(s) | 87, 128, 198, 437, 671 |
| HpaII | CCGG | 5 cut(s) | 66, 137, 175, 301, 483 |
| HphI | GGTGA | 4 cut(s) | 89, 217, 421, 704 |
| Hpy188I | TCNGA | 2 cut(s) | 86, 513 |
| Hpy188III | TCNNGA | 5 cut(s) | 66, 293, 476, 678, 680 |
| Hpy99I | CGWCG | 2 cut(s) | 146, 389 |
| HpyAV | CCTTC | 1 cut(s) | 598 |
| HpyCH4III | ACNGT | 2 cut(s) | 274, 385 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 617, 632 |
| HpyF3I | CTNAG | 1 cut(s) | 729 |
| Hsp92II | CATG | 2 cut(s) | 104, 616 |
| HspAI | GCGC | 3 cut(s) | 226, 486, 488 |
| Kpn2I | TCCGGA | 1 cut(s) | 65 |
| KroI | GCCGGC | 1 cut(s) | 174 |
| KroNI | GCCGGC | 1 cut(s) | 176 |
| KspI | CCGCGG | 1 cut(s) | 578 |
| Kzo9I | GATC | 3 cut(s) | 351, 453, 580 |
| LmnI | GCTCC | 2 cut(s) | 277, 421 |
| LpnPI | CCDG | 6 cut(s) | 5, 79, 150, 188, 314, 496 |
| Lsp1109I | GCAGC | 2 cut(s) | 108, 558 |
| LweI | GCATC | 2 cut(s) | 41, 59 |
| MaeI | CTAG | 2 cut(s) | 308, 557 |
| MalI | GATC | 3 cut(s) | 353, 455, 582 |
| MboI | GATC | 3 cut(s) | 351, 453, 580 |
| MboII | GAAGA | 2 cut(s) | 358, 446 |
| MflI | RGATCY | 1 cut(s) | 580 |
| MhlI | GDGCHC | 3 cut(s) | 42, 426, 643 |
| MlsI | TGGCCA | 2 cut(s) | 380, 611 |
| MluNI | TGGCCA | 2 cut(s) | 380, 611 |
| MlyI | GAGTC | 4 cut(s) | 81, 192, 431, 665 |
| Mox20I | TGGCCA | 2 cut(s) | 380, 611 |
| MroI | TCCGGA | 1 cut(s) | 65 |
| MroNI | GCCGGC | 1 cut(s) | 174 |
| MscI | TGGCCA | 2 cut(s) | 380, 611 |
| MseI | TTAA | 1 cut(s) | 597 |
| MslI | CAYNNNNRTG | 1 cut(s) | 59 |
| Msp20I | TGGCCA | 2 cut(s) | 380, 611 |
| MspA1I | CMGCKG | 1 cut(s) | 577 |
| MspI | CCGG | 5 cut(s) | 66, 137, 175, 301, 483 |
| MspR9I | CCNGG | 2 cut(s) | 137, 301 |
| MvnI | CGCG | 6 cut(s) | 294, 329, 372, 488, 577, 620 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 617, 632 |
| NaeI | GCCGGC | 1 cut(s) | 176 |
| NciI | CCSGG | 2 cut(s) | 137, 301 |
| NdeII | GATC | 3 cut(s) | 351, 453, 580 |
| NgoMIV | GCCGGC | 1 cut(s) | 174 |
| NlaIII | CATG | 2 cut(s) | 104, 616 |
| NlaIV | GGNNCC | 8 cut(s) | 26, 39, 114, 423, 467, 554, 641, 653 |
| NmeAIII | GCCGAG | 1 cut(s) | 298 |
| NruI | TCGCGA | 1 cut(s) | 294 |
| NsbI | TGCGCA | 1 cut(s) | 227 |
| PaeR7I | CTCGAG | 1 cut(s) | 678 |
| PalAI | GGCGCGCC | 1 cut(s) | 486 |
| PauI | GCGCGC | 1 cut(s) | 486 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 209, 529 |
| PdiI | GCCGGC | 1 cut(s) | 176 |
| PfeI | GAWTC | 1 cut(s) | 128 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 667 |
| PfoI | TCCNGGA | 1 cut(s) | 135 |
| PkrI | GCNGC | 6 cut(s) | 12, 123, 255, 331, 573, 576 |
| PleI | GAGTC | 4 cut(s) | 81, 192, 431, 665 |
| PpsI | GAGTC | 4 cut(s) | 81, 192, 431, 665 |
| PspN4I | GGNNCC | 8 cut(s) | 26, 39, 114, 423, 467, 554, 641, 653 |
| PspOMI | GGGCCC | 1 cut(s) | 639 |
| PspPI | GGNCC | 5 cut(s) | 113, 465, 639, 640, 652 |
| PsuI | RGATCY | 1 cut(s) | 580 |
| PteI | GCGCGC | 1 cut(s) | 486 |
| RruI | TCGCGA | 1 cut(s) | 294 |
| RseI | CAYNNNNRTG | 1 cut(s) | 59 |
| SacII | CCGCGG | 1 cut(s) | 578 |
| SaqAI | TTAA | 1 cut(s) | 597 |
| SatI | GCNGC | 6 cut(s) | 11, 122, 254, 330, 572, 575 |
| Sau3AI | GATC | 3 cut(s) | 351, 453, 580 |
| Sau96I | GGNCC | 5 cut(s) | 113, 465, 639, 640, 652 |
| SchI | GAGTC | 4 cut(s) | 81, 192, 431, 665 |
| ScrFI | CCNGG | 2 cut(s) | 137, 301 |
| SduI | GDGCHC | 3 cut(s) | 42, 426, 643 |
| SfaNI | GCATC | 2 cut(s) | 41, 59 |
| Sfr274I | CTCGAG | 1 cut(s) | 678 |
| Sfr303I | CCGCGG | 1 cut(s) | 578 |
| SgrAI | CRCCGGYG | 1 cut(s) | 482 |
| SgrBI | CCGCGG | 1 cut(s) | 578 |
| SgsI | GGCGCGCC | 1 cut(s) | 486 |
| SinI | GGWCC | 1 cut(s) | 113 |
| SlaI | CTCGAG | 1 cut(s) | 678 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 59 |
| SmlI | CTYRAG | 2 cut(s) | 678, 718 |
| SmoI | CTYRAG | 2 cut(s) | 678, 718 |
| SspMI | CTAG | 2 cut(s) | 308, 557 |
| StyD4I | CCNGG | 2 cut(s) | 135, 299 |
| TaaI | ACNGT | 2 cut(s) | 274, 385 |
| TaqI | TCGA | 5 cut(s) | 192, 212, 432, 443, 679 |
| TauI | GCSGC | 4 cut(s) | 13, 256, 332, 577 |
| TfiI | GAWTC | 1 cut(s) | 128 |
| Tru1I | TTAA | 1 cut(s) | 597 |
| Tru9I | TTAA | 1 cut(s) | 597 |
| TscAI | CASTG | 1 cut(s) | 24 |
| TseI | GCWGC | 2 cut(s) | 121, 571 |
| TspGWI | ACGGA | 3 cut(s) | 352, 474, 557 |
| TspRI | CASTG | 1 cut(s) | 24 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 667 |
| VpaK11BI | GGWCC | 1 cut(s) | 113 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 271, 499 |
| XhoI | CTCGAG | 1 cut(s) | 678 |
| XspI | CTAG | 2 cut(s) | 308, 557 |