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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 423 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 637 |
| AccII | CGCG | 5 cut(s) | 8, 458, 528, 584, 590 |
| AclWI | GGATC | 3 cut(s) | 224, 285, 298 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 53, 54, 234, 311, 391, 637 |
| AgsI | TTSAA | 2 cut(s) | 274, 376 |
| AleI | CACNNNNGTG | 1 cut(s) | 618 |
| AluBI | AGCT | 4 cut(s) | 44, 126, 198, 596 |
| AluI | AGCT | 4 cut(s) | 44, 126, 198, 596 |
| Alw21I | GWGCWC | 1 cut(s) | 128 |
| Alw26I | GTCTC | 2 cut(s) | 309, 431 |
| AlwI | GGATC | 3 cut(s) | 224, 285, 298 |
| Ama87I | CYCGRG | 2 cut(s) | 160, 659 |
| AoxI | GGCC | 2 cut(s) | 468, 622 |
| ApeKI | GCWGC | 1 cut(s) | 578 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 80, 112 |
| AscI | GGCGCGCC | 1 cut(s) | 456 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 417 |
| AspLEI | GCGC | 4 cut(s) | 10, 458, 460, 592 |
| AspS9I | GGNCC | 2 cut(s) | 225, 434 |
| AsuC2I | CCSGG | 2 cut(s) | 391, 453 |
| AsuHPI | GGTGA | 1 cut(s) | 502 |
| AvaI | CYCGRG | 2 cut(s) | 160, 659 |
| AvaII | GGWCC | 2 cut(s) | 225, 434 |
| BamHI | GGATCC | 1 cut(s) | 290 |
| BanII | GRGCYC | 2 cut(s) | 128, 167 |
| BauI | CACGAG | 1 cut(s) | 497 |
| BbsI | GAAGAC | 1 cut(s) | 262 |
| Bbv12I | GWGCWC | 1 cut(s) | 128 |
| BbvI | GCAGC | 1 cut(s) | 590 |
| BccI | CCATC | 1 cut(s) | 47 |
| BceAI | ACGGC | 1 cut(s) | 408 |
| BcnI | CCSGG | 2 cut(s) | 391, 453 |
| BcoDI | GTCTC | 2 cut(s) | 309, 431 |
| BfaI | CTAG | 4 cut(s) | 179, 195, 408, 597 |
| BisI | GCNGC | 4 cut(s) | 187, 341, 579, 582 |
| BlsI | GCNGC | 4 cut(s) | 188, 342, 580, 583 |
| Bme1390I | CCNGG | 2 cut(s) | 391, 453 |
| Bme18I | GGWCC | 2 cut(s) | 225, 434 |
| BmeT110I | CYCGRG | 2 cut(s) | 160, 659 |
| BmgT120I | GGNCC | 2 cut(s) | 225, 434 |
| BmiI | GGNNCC | 2 cut(s) | 292, 436 |
| BmrFI | CCNGG | 2 cut(s) | 391, 453 |
| BmsI | GCATC | 1 cut(s) | 394 |
| BpiI | GAAGAC | 1 cut(s) | 262 |
| BpuMI | CCSGG | 2 cut(s) | 391, 453 |
| BsaJI | CCNNGG | 5 cut(s) | 63, 221, 233, 390, 430 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 344, 374 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 53, 54, 234, 311, 391, 637 |
| Bse1I | ACTGG | 1 cut(s) | 355 |
| Bse3DI | GCAATG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 5 cut(s) | 63, 221, 233, 390, 430 |
| BseGI | GGATG | 2 cut(s) | 123, 441 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 53, 54, 234, 311, 391, 637 |
| BseMI | GCAATG | 1 cut(s) | 83 |
| BseNI | ACTGG | 1 cut(s) | 355 |
| BsePI | GCGCGC | 1 cut(s) | 456 |
| BseRI | GAGGAG | 1 cut(s) | 286 |
| BseXI | GCAGC | 1 cut(s) | 590 |
| Bsh1236I | CGCG | 5 cut(s) | 8, 458, 528, 584, 590 |
| Bsh1285I | CGRYCG | 2 cut(s) | 262, 588 |
| BshFI | GGCC | 2 cut(s) | 470, 624 |
| BsiEI | CGRYCG | 2 cut(s) | 262, 588 |
| BsiHKAI | GWGCWC | 1 cut(s) | 128 |
| BsiHKCI | CYCGRG | 2 cut(s) | 160, 659 |
| BsiSI | CCGG | 2 cut(s) | 390, 453 |
| BslFI | GGGAC | 2 cut(s) | 196, 420 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 53, 54, 234, 311, 391, 637 |
| BsmAI | GTCTC | 2 cut(s) | 309, 431 |
| BsmBI | CGTCTC | 2 cut(s) | 309, 431 |
| BsmFI | GGGAC | 2 cut(s) | 196, 420 |
| BsnI | GGCC | 2 cut(s) | 470, 624 |
| BsoBI | CYCGRG | 2 cut(s) | 160, 659 |
| Bsp1286I | GDGCHC | 2 cut(s) | 128, 167 |
| Bsp143I | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| Bsp19I | CCATGG | 1 cut(s) | 233 |
| BspANI | GGCC | 2 cut(s) | 470, 624 |
| BspFNI | CGCG | 5 cut(s) | 8, 458, 528, 584, 590 |
| BspLI | GGNNCC | 2 cut(s) | 292, 436 |
| BspPI | GGATC | 3 cut(s) | 224, 285, 298 |
| BspQI | GCTCTTC | 2 cut(s) | 133, 510 |
| BsrDI | GCAATG | 1 cut(s) | 83 |
| BsrI | ACTGG | 1 cut(s) | 355 |
| BssECI | CCNNGG | 5 cut(s) | 63, 221, 233, 390, 430 |
| BssHII | GCGCGC | 1 cut(s) | 456 |
| BssMI | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| BssSI | CACGAG | 1 cut(s) | 497 |
| BssT1I | CCWWGG | 2 cut(s) | 233, 430 |
| Bst2BI | CACGAG | 1 cut(s) | 497 |
| Bst4CI | ACNGT | 1 cut(s) | 347 |
| Bst6I | CTCTTC | 2 cut(s) | 133, 510 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 200, 458, 504, 594, 603 |
| BstDEI | CTNAG | 1 cut(s) | 472 |
| BstDSI | CCRYGG | 1 cut(s) | 233 |
| BstF5I | GGATG | 2 cut(s) | 123, 441 |
| BstFNI | CGCG | 5 cut(s) | 8, 458, 528, 584, 590 |
| BstHHI | GCGC | 4 cut(s) | 10, 458, 460, 592 |
| BstKTI | GATC | 6 cut(s) | 19, 184, 232, 262, 293, 553 |
| BstMAI | GTCTC | 2 cut(s) | 309, 431 |
| BstMBI | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| BstMCI | CGRYCG | 2 cut(s) | 262, 588 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 195, 457, 578, 587, 598, 602 |
| BstNSI | RCATGY | 1 cut(s) | 506 |
| BstSCI | CCNGG | 2 cut(s) | 389, 451 |
| BstUI | CGCG | 5 cut(s) | 8, 458, 528, 584, 590 |
| BstV1I | GCAGC | 1 cut(s) | 590 |
| BstV2I | GAAGAC | 1 cut(s) | 262 |
| BstX2I | RGATCY | 1 cut(s) | 290 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 620 |
| BstYI | RGATCY | 1 cut(s) | 290 |
| BsuRI | GGCC | 2 cut(s) | 470, 624 |
| BtgI | CCRYGG | 1 cut(s) | 233 |
| BtsCI | GGATG | 2 cut(s) | 123, 441 |
| BtsIMutI | CAGTG | 1 cut(s) | 343 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 200, 458, 504, 594, 603 |
| CfoI | GCGC | 4 cut(s) | 10, 458, 460, 592 |
| Cfr13I | GGNCC | 2 cut(s) | 225, 434 |
| CpoI | CGGWCCG | 1 cut(s) | 225 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 376, 411 |
| CspI | CGGWCCG | 1 cut(s) | 225 |
| CviAII | CATG | 2 cut(s) | 234, 503 |
| DdeI | CTNAG | 1 cut(s) | 472 |
| DpnI | GATC | 6 cut(s) | 18, 183, 231, 261, 292, 552 |
| DpnII | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 423 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 423 |
| Eam1104I | CTCTTC | 2 cut(s) | 133, 510 |
| EarI | CTCTTC | 2 cut(s) | 133, 510 |
| EciI | GGCGGA | 2 cut(s) | 289, 327 |
| Ecl136II | GAGCTC | 1 cut(s) | 126 |
| Eco130I | CCWWGG | 2 cut(s) | 233, 430 |
| Eco147I | AGGCCT | 1 cut(s) | 470 |
| Eco24I | GRGCYC | 2 cut(s) | 128, 167 |
| Eco47I | GGWCC | 2 cut(s) | 225, 434 |
| Eco53kI | GAGCTC | 1 cut(s) | 126 |
| Eco88I | CYCGRG | 2 cut(s) | 160, 659 |
| EcoICRI | GAGCTC | 1 cut(s) | 126 |
| EcoT14I | CCWWGG | 2 cut(s) | 233, 430 |
| EcoT38I | GRGCYC | 2 cut(s) | 128, 167 |
| ErhI | CCWWGG | 2 cut(s) | 233, 430 |
| Esp3I | CGTCTC | 2 cut(s) | 309, 431 |
| FaeI | CATG | 2 cut(s) | 237, 506 |
| FaiI | YATR | 4 cut(s) | 72, 235, 504, 533 |
| FaqI | GGGAC | 2 cut(s) | 196, 420 |
| FatI | CATG | 2 cut(s) | 233, 502 |
| FauI | CCCGC | 2 cut(s) | 221, 275 |
| Fnu4HI | GCNGC | 4 cut(s) | 187, 341, 579, 582 |
| FokI | GGATG | 2 cut(s) | 130, 428 |
| FriOI | GRGCYC | 2 cut(s) | 128, 167 |
| Fsp4HI | GCNGC | 4 cut(s) | 187, 341, 579, 582 |
| FspBI | CTAG | 4 cut(s) | 179, 195, 408, 597 |
| GlaI | GCGC | 4 cut(s) | 9, 457, 459, 591 |
| GluI | GCNGC | 4 cut(s) | 187, 341, 579, 582 |
| HaeIII | GGCC | 2 cut(s) | 470, 624 |
| HapII | CCGG | 2 cut(s) | 390, 453 |
| HhaI | GCGC | 4 cut(s) | 10, 458, 460, 592 |
| Hin1II | CATG | 2 cut(s) | 237, 506 |
| Hin6I | GCGC | 4 cut(s) | 8, 456, 458, 590 |
| HinP1I | GCGC | 4 cut(s) | 8, 456, 458, 590 |
| HincII | GTYRAC | 1 cut(s) | 99 |
| HindII | GTYRAC | 1 cut(s) | 99 |
| HpaII | CCGG | 2 cut(s) | 390, 453 |
| HphI | GGTGA | 1 cut(s) | 502 |
| Hpy166II | GTNNAC | 2 cut(s) | 84, 99 |
| Hpy188I | TCNGA | 2 cut(s) | 146, 225 |
| Hpy188III | TCNNGA | 6 cut(s) | 132, 160, 274, 437, 483, 497 |
| Hpy8I | GTNNAC | 2 cut(s) | 84, 99 |
| HpyAV | CCTTC | 2 cut(s) | 281, 407 |
| HpyCH4III | ACNGT | 1 cut(s) | 347 |
| HpyCH4IV | ACGT | 2 cut(s) | 318, 493 |
| HpyCH4V | TGCA | 2 cut(s) | 351, 572 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 195, 457, 578, 587, 598, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 472 |
| HpySE526I | ACGT | 2 cut(s) | 318, 493 |
| Hsp92II | CATG | 2 cut(s) | 237, 506 |
| HspAI | GCGC | 4 cut(s) | 8, 456, 458, 590 |
| Kzo9I | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| LguI | GCTCTTC | 2 cut(s) | 133, 510 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LpnPI | CCDG | 4 cut(s) | 292, 368, 403, 466 |
| Lsp1109I | GCAGC | 1 cut(s) | 590 |
| LweI | GCATC | 1 cut(s) | 394 |
| MaeI | CTAG | 4 cut(s) | 179, 195, 408, 597 |
| MaeII | ACGT | 2 cut(s) | 318, 493 |
| MaeIII | GTNAC | 2 cut(s) | 380, 494 |
| MalI | GATC | 6 cut(s) | 18, 183, 231, 261, 292, 552 |
| MboI | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| MboII | GAAGA | 7 cut(s) | 11, 120, 251, 254, 262, 527, 545 |
| MfeI | CAATTG | 1 cut(s) | 306 |
| MflI | RGATCY | 1 cut(s) | 290 |
| MhlI | GDGCHC | 2 cut(s) | 128, 167 |
| MluCI | AATT | 2 cut(s) | 306, 521 |
| MnlI | CCTC | 7 cut(s) | 58, 177, 231, 304, 307, 370, 376 |
| MroXI | GAANNNNTTC | 1 cut(s) | 417 |
| MseI | TTAA | 1 cut(s) | 567 |
| MslI | CAYNNNNRTG | 2 cut(s) | 501, 618 |
| MspA1I | CMGCKG | 1 cut(s) | 282 |
| MspI | CCGG | 2 cut(s) | 390, 453 |
| MspR9I | CCNGG | 2 cut(s) | 391, 453 |
| MunI | CAATTG | 1 cut(s) | 306 |
| MvnI | CGCG | 5 cut(s) | 8, 458, 528, 584, 590 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 195, 457, 578, 587, 598, 602 |
| NciI | CCSGG | 2 cut(s) | 391, 453 |
| NcoI | CCATGG | 1 cut(s) | 233 |
| NdeII | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| NlaIII | CATG | 2 cut(s) | 237, 506 |
| NlaIV | GGNNCC | 2 cut(s) | 292, 436 |
| NmeAIII | GCCGAG | 1 cut(s) | 88 |
| NmuCI | GTSAC | 2 cut(s) | 380, 494 |
| NspI | RCATGY | 1 cut(s) | 506 |
| OliI | CACNNNNGTG | 1 cut(s) | 618 |
| PaeI | GCATGC | 1 cut(s) | 506 |
| PalAI | GGCGCGCC | 1 cut(s) | 456 |
| PauI | GCGCGC | 1 cut(s) | 456 |
| PceI | AGGCCT | 1 cut(s) | 470 |
| PciSI | GCTCTTC | 2 cut(s) | 133, 510 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 12, 92 |
| PdmI | GAANNNNTTC | 1 cut(s) | 417 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 637 |
| PkrI | GCNGC | 4 cut(s) | 188, 342, 580, 583 |
| Ple19I | CGATCG | 1 cut(s) | 262 |
| Psp124BI | GAGCTC | 1 cut(s) | 128 |
| PspN4I | GGNNCC | 2 cut(s) | 292, 436 |
| PspPI | GGNCC | 2 cut(s) | 225, 434 |
| PsuI | RGATCY | 1 cut(s) | 290 |
| PteI | GCGCGC | 1 cut(s) | 456 |
| PvuI | CGATCG | 1 cut(s) | 262 |
| RseI | CAYNNNNRTG | 2 cut(s) | 501, 618 |
| Rsr2I | CGGWCCG | 1 cut(s) | 225 |
| RsrII | CGGWCCG | 1 cut(s) | 225 |
| SacI | GAGCTC | 1 cut(s) | 128 |
| SapI | GCTCTTC | 2 cut(s) | 133, 510 |
| SaqAI | TTAA | 1 cut(s) | 567 |
| SatI | GCNGC | 4 cut(s) | 187, 341, 579, 582 |
| Sau3AI | GATC | 6 cut(s) | 16, 181, 229, 259, 290, 550 |
| Sau96I | GGNCC | 2 cut(s) | 225, 434 |
| ScrFI | CCNGG | 2 cut(s) | 391, 453 |
| SduI | GDGCHC | 2 cut(s) | 128, 167 |
| SetI | ASST | 8 cut(s) | 46, 128, 200, 223, 321, 368, 496, 598 |
| SfaNI | GCATC | 1 cut(s) | 394 |
| SgsI | GGCGCGCC | 1 cut(s) | 456 |
| SinI | GGWCC | 2 cut(s) | 225, 434 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 501, 618 |
| SphI | GCATGC | 1 cut(s) | 506 |
| Sse9I | AATT | 2 cut(s) | 306, 521 |
| SseBI | AGGCCT | 1 cut(s) | 470 |
| SspMI | CTAG | 4 cut(s) | 179, 195, 408, 597 |
| SstI | GAGCTC | 1 cut(s) | 128 |
| StuI | AGGCCT | 1 cut(s) | 470 |
| StyD4I | CCNGG | 2 cut(s) | 389, 451 |
| StyI | CCWWGG | 2 cut(s) | 233, 430 |
| TaaI | ACNGT | 1 cut(s) | 347 |
| TaiI | ACGT | 2 cut(s) | 321, 496 |
| TaqI | TCGA | 2 cut(s) | 15, 482 |
| TaqII | GACCGA | 2 cut(s) | 242, 256 |
| TasI | AATT | 2 cut(s) | 306, 521 |
| TauI | GCSGC | 3 cut(s) | 189, 343, 584 |
| Tru1I | TTAA | 1 cut(s) | 567 |
| Tru9I | TTAA | 1 cut(s) | 567 |
| TscAI | CASTG | 1 cut(s) | 350 |
| TseFI | GTSAC | 2 cut(s) | 380, 494 |
| TseI | GCWGC | 1 cut(s) | 578 |
| Tsp45I | GTSAC | 2 cut(s) | 380, 494 |
| TspDTI | ATGAA | 1 cut(s) | 261 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 1 cut(s) | 350 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 637 |
| VpaK11BI | GGWCC | 2 cut(s) | 225, 434 |
| XceI | RCATGY | 1 cut(s) | 506 |
| XmnI | GAANNNNTTC | 1 cut(s) | 417 |
| XspI | CTAG | 4 cut(s) | 179, 195, 408, 597 |