Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2076 |
| AatII | GACGTC | 1 cut(s) | 1770 |
| Acc36I | ACCTGC | 4 cut(s) | 290, 1437, 1846, 2236 |
| AccB1I | GGYRCC | 3 cut(s) | 71, 677, 746 |
| AccI | GTMKAC | 1 cut(s) | 510 |
| AccIII | TCCGGA | 1 cut(s) | 803 |
| AclI | AACGTT | 1 cut(s) | 798 |
| AclWI | GGATC | 9 cut(s) | 826, 839, 1124, 1262, 1646, 1659, 2216, 2337, 2345 |
| AcoI | YGGCCR | 6 cut(s) | 221, 712, 1021, 1047, 1353, 2229 |
| AcsI | RAATTY | 2 cut(s) | 641, 2165 |
| AcuI | CTGAAG | 7 cut(s) | 394, 924, 1107, 1245, 1461, 1986, 2178 |
| AcyI | GRCGYC | 3 cut(s) | 747, 909, 1767 |
| AfaI | GTAC | 8 cut(s) | 203, 767, 1080, 1218, 1881, 2016, 2133, 2149 |
| AfeI | AGCGCT | 1 cut(s) | 547 |
| AgeI | ACCGGT | 1 cut(s) | 736 |
| AgsI | TTSAA | 4 cut(s) | 46, 626, 1160, 2174 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 737 |
| AjnI | CCWGG | 9 cut(s) | 65, 680, 966, 1018, 1331, 1845, 2032, 2073, 2490 |
| Alw21I | GWGCWC | 6 cut(s) | 88, 241, 891, 955, 2116, 2565 |
| Alw26I | GTCTC | 4 cut(s) | 95, 1741, 1789, 2487 |
| Alw44I | GTGCAC | 1 cut(s) | 237 |
| AlwI | GGATC | 9 cut(s) | 826, 839, 1124, 1262, 1646, 1659, 2216, 2337, 2345 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2491 |
| Ama87I | CYCGRG | 2 cut(s) | 273, 881 |
| Aor13HI | TCCGGA | 1 cut(s) | 803 |
| Aor51HI | AGCGCT | 1 cut(s) | 547 |
| ApaI | GGGCCC | 2 cut(s) | 274, 1751 |
| ApaLI | GTGCAC | 1 cut(s) | 237 |
| ApoI | RAATTY | 2 cut(s) | 641, 2165 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 398, 430 |
| AsiGI | ACCGGT | 1 cut(s) | 736 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1536, 2511 |
| AsuC2I | CCSGG | 4 cut(s) | 151, 590, 962, 2097 |
| AsuHPI | GGTGA | 6 cut(s) | 104, 134, 298, 1035, 1677, 2129 |
| AsuNHI | GCTAGC | 1 cut(s) | 2543 |
| AvaI | CYCGRG | 2 cut(s) | 273, 881 |
| AvaII | GGWCC | 8 cut(s) | 63, 529, 684, 806, 1526, 2078, 2358, 2371 |
| BaeGI | GKGCMC | 4 cut(s) | 74, 241, 274, 1751 |
| BalI | TGGCCA | 1 cut(s) | 223 |
| BamHI | GGATCC | 2 cut(s) | 831, 1651 |
| BanI | GGYRCC | 3 cut(s) | 71, 677, 746 |
| BanII | GRGCYC | 5 cut(s) | 274, 955, 1751, 1809, 2116 |
| BbsI | GAAGAC | 2 cut(s) | 912, 1148 |
| Bbv12I | GWGCWC | 6 cut(s) | 88, 241, 891, 955, 2116, 2565 |
| BbvCI | CCTCAGC | 3 cut(s) | 1098, 1236, 1776 |
| BceAI | ACGGC | 8 cut(s) | 69, 466, 714, 727, 843, 1299, 2436, 2481 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 61, 72, 95, 2552, 2586 |
| BciT130I | CCWGG | 9 cut(s) | 67, 682, 968, 1020, 1333, 1847, 2034, 2075, 2492 |
| BcnI | CCSGG | 4 cut(s) | 151, 590, 962, 2097 |
| BcoDI | GTCTC | 4 cut(s) | 95, 1741, 1789, 2487 |
| BfaI | CTAG | 6 cut(s) | 98, 281, 2052, 2303, 2471, 2544 |
| BfmI | CTRYAG | 4 cut(s) | 297, 1230, 1290, 2063 |
| BfoI | RGCGCY | 4 cut(s) | 549, 750, 1679, 2471 |
| BfuAI | ACCTGC | 4 cut(s) | 290, 1437, 1846, 2236 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2429 |
| BglII | AGATCT | 1 cut(s) | 277 |
| BlpI | GCTNAGC | 2 cut(s) | 1567, 1803 |
| BmcAI | AGTACT | 2 cut(s) | 1080, 1218 |
| Bme18I | GGWCC | 8 cut(s) | 63, 529, 684, 806, 1526, 2078, 2358, 2371 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 737 |
| BmeT110I | CYCGRG | 2 cut(s) | 273, 881 |
| BmsI | GCATC | 5 cut(s) | 178, 768, 790, 1939, 2571 |
| BmtI | GCTAGC | 1 cut(s) | 2547 |
| BoxI | GACNNNNGTC | 1 cut(s) | 527 |
| BpiI | GAAGAC | 2 cut(s) | 912, 1148 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 418, 450, 1091, 1123, 1769, 1801 |
| BpmI | CTGGAG | 2 cut(s) | 981, 2016 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1098, 1236, 1776, 1980 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1567, 1803 |
| BpuEI | CTTGAG | 5 cut(s) | 1473, 1698, 1899, 2100, 2481 |
| BpuMI | CCSGG | 4 cut(s) | 151, 590, 962, 2097 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 471 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1128, 1695 |
| BsaHI | GRCGYC | 3 cut(s) | 747, 909, 1767 |
| BsaI | GGTCTC | 2 cut(s) | 95, 1789 |
| BsaWI | WCCGGW | 3 cut(s) | 605, 736, 803 |
| Bse118I | RCCGGY | 5 cut(s) | 736, 971, 1045, 1359, 1672 |
| Bse1I | ACTGG | 7 cut(s) | 75, 463, 679, 1066, 1204, 1727, 2433 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1128, 1695 |
| BseAI | TCCGGA | 1 cut(s) | 803 |
| BseBI | CCWGG | 9 cut(s) | 67, 682, 968, 1020, 1333, 1847, 2034, 2075, 2492 |
| BseCI | ATCGAT | 2 cut(s) | 27, 471 |
| BseGI | GGATG | 4 cut(s) | 224, 444, 781, 2563 |
| BseJI | GATNNNNATC | 2 cut(s) | 1128, 1695 |
| BseNI | ACTGG | 7 cut(s) | 75, 463, 679, 1066, 1204, 1727, 2433 |
| BsePI | GCGCGC | 2 cut(s) | 2501, 2527 |
| BseRI | GAGGAG | 6 cut(s) | 649, 945, 1793, 1965, 2019, 2453 |
| BseSI | GKGCMC | 4 cut(s) | 74, 241, 274, 1751 |
| BseX3I | CGGCCG | 3 cut(s) | 712, 1047, 2229 |
| BseYI | CCCAGC | 2 cut(s) | 160, 1463 |
| BsgI | GTGCAG | 2 cut(s) | 637, 1604 |
| Bsh1285I | CGRYCG | 8 cut(s) | 606, 715, 1050, 1360, 1659, 1905, 2232, 2311 |
| BshNI | GGYRCC | 3 cut(s) | 71, 677, 746 |
| BshTI | ACCGGT | 1 cut(s) | 736 |
| BshVI | ATCGAT | 2 cut(s) | 27, 471 |
| BsiEI | CGRYCG | 8 cut(s) | 606, 715, 1050, 1360, 1659, 1905, 2232, 2311 |
| BsiHKAI | GWGCWC | 6 cut(s) | 88, 241, 891, 955, 2116, 2565 |
| BsiHKCI | CYCGRG | 2 cut(s) | 273, 881 |
| BslFI | GGGAC | 3 cut(s) | 1539, 1754, 2069 |
| BsmAI | GTCTC | 4 cut(s) | 95, 1741, 1789, 2487 |
| BsmFI | GGGAC | 3 cut(s) | 1539, 1754, 2069 |
| BsmI | GAATGC | 3 cut(s) | 90, 298, 1627 |
| Bso31I | GGTCTC | 2 cut(s) | 95, 1789 |
| BsoBI | CYCGRG | 2 cut(s) | 273, 881 |
| Bsp120I | GGGCCC | 2 cut(s) | 270, 1747 |
| Bsp13I | TCCGGA | 1 cut(s) | 803 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1567, 1803 |
| Bsp19I | CCATGG | 1 cut(s) | 525 |
| Bsp68I | TCGCGA | 2 cut(s) | 261, 1507 |
| BspDI | ATCGAT | 2 cut(s) | 27, 471 |
| BspEI | TCCGGA | 1 cut(s) | 803 |
| BspMAI | CTGCAG | 2 cut(s) | 301, 2067 |
| BspMI | ACCTGC | 4 cut(s) | 290, 1437, 1846, 2236 |
| BspOI | GCTAGC | 1 cut(s) | 2547 |
| BspPI | GGATC | 9 cut(s) | 826, 839, 1124, 1262, 1646, 1659, 2216, 2337, 2345 |
| BspQI | GCTCTTC | 1 cut(s) | 1480 |
| BspT107I | GGYRCC | 3 cut(s) | 71, 677, 746 |
| BspTNI | GGTCTC | 2 cut(s) | 95, 1789 |
| BsrFI | RCCGGY | 5 cut(s) | 736, 971, 1045, 1359, 1672 |
| BsrI | ACTGG | 7 cut(s) | 75, 463, 679, 1066, 1204, 1727, 2433 |
| BssAI | RCCGGY | 5 cut(s) | 736, 971, 1045, 1359, 1672 |
| BssHII | GCGCGC | 2 cut(s) | 2501, 2527 |
| BssNI | GRCGYC | 3 cut(s) | 747, 909, 1767 |
| BssT1I | CCWWGG | 1 cut(s) | 525 |
| Bst2UI | CCWGG | 9 cut(s) | 67, 682, 968, 1020, 1333, 1847, 2034, 2075, 2492 |
| Bst4CI | ACNGT | 2 cut(s) | 1279, 2416 |
| Bst6I | CTCTTC | 3 cut(s) | 1114, 1480, 1611 |
| BstACI | GRCGYC | 3 cut(s) | 747, 909, 1767 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1220 |
| BstDSI | CCRYGG | 1 cut(s) | 525 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 999, 1917 |
| BstF5I | GGATG | 4 cut(s) | 224, 444, 781, 2563 |
| BstH2I | RGCGCY | 4 cut(s) | 549, 750, 1679, 2471 |
| BstMAI | GTCTC | 4 cut(s) | 95, 1741, 1789, 2487 |
| BstMCI | CGRYCG | 8 cut(s) | 606, 715, 1050, 1360, 1659, 1905, 2232, 2311 |
| BstNI | CCWGG | 9 cut(s) | 67, 682, 968, 1020, 1333, 1847, 2034, 2075, 2492 |
| BstNSI | RCATGY | 1 cut(s) | 763 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 527 |
| BstSFI | CTRYAG | 4 cut(s) | 297, 1230, 1290, 2063 |
| BstSLI | GKGCMC | 4 cut(s) | 74, 241, 274, 1751 |
| BstV2I | GAAGAC | 2 cut(s) | 912, 1148 |
| BstX2I | RGATCY | 5 cut(s) | 277, 831, 1651, 2329, 2337 |
| BstYI | RGATCY | 5 cut(s) | 277, 831, 1651, 2329, 2337 |
| BstZI | CGGCCG | 3 cut(s) | 712, 1047, 2229 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 471 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 471 |
| BtgI | CCRYGG | 1 cut(s) | 525 |
| BtgZI | GCGATG | 2 cut(s) | 178, 1945 |
| BtsCI | GGATG | 4 cut(s) | 224, 444, 781, 2563 |
| BtsIMutI | CAGTG | 4 cut(s) | 456, 672, 1554, 2154 |
| BtuMI | TCGCGA | 2 cut(s) | 261, 1507 |
| BveI | ACCTGC | 4 cut(s) | 290, 1437, 1846, 2236 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2491 |
| CciNI | GCGGCCGC | 1 cut(s) | 2229 |
| Cfr10I | RCCGGY | 5 cut(s) | 736, 971, 1045, 1359, 1672 |
| ClaI | ATCGAT | 2 cut(s) | 27, 471 |
| CseI | GACGC | 5 cut(s) | 917, 1646, 1671, 2311, 2549 |
| Csp6I | GTAC | 8 cut(s) | 202, 766, 1079, 1217, 1880, 2015, 2132, 2148 |
| CspAI | ACCGGT | 1 cut(s) | 736 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1503, 1538 |
| CviAII | CATG | 8 cut(s) | 199, 491, 526, 760, 1322, 1646, 1822, 1925 |
| CviQI | GTAC | 8 cut(s) | 202, 766, 1079, 1217, 1880, 2015, 2132, 2148 |
| DinI | GGCGCC | 1 cut(s) | 748 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2076 |
| DriI | GACNNNNNGTC | 1 cut(s) | 737 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2076 |
| EaeI | YGGCCR | 6 cut(s) | 221, 712, 1021, 1047, 1353, 2229 |
| EagI | CGGCCG | 3 cut(s) | 712, 1047, 2229 |
| Eam1104I | CTCTTC | 3 cut(s) | 1114, 1480, 1611 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 737 |
| EarI | CTCTTC | 3 cut(s) | 1114, 1480, 1611 |
| EciI | GGCGGA | 1 cut(s) | 845 |
| Ecl136II | GAGCTC | 2 cut(s) | 953, 2114 |
| EclXI | CGGCCG | 3 cut(s) | 712, 1047, 2229 |
| Eco130I | CCWWGG | 1 cut(s) | 525 |
| Eco147I | AGGCCT | 1 cut(s) | 919 |
| Eco24I | GRGCYC | 5 cut(s) | 274, 955, 1751, 1809, 2116 |
| Eco31I | GGTCTC | 2 cut(s) | 95, 1789 |
| Eco32I | GATATC | 2 cut(s) | 868, 1957 |
| Eco47I | GGWCC | 8 cut(s) | 63, 529, 684, 806, 1526, 2078, 2358, 2371 |
| Eco47III | AGCGCT | 1 cut(s) | 547 |
| Eco52I | CGGCCG | 3 cut(s) | 712, 1047, 2229 |
| Eco53kI | GAGCTC | 2 cut(s) | 953, 2114 |
| Eco57I | CTGAAG | 7 cut(s) | 394, 924, 1107, 1245, 1461, 1986, 2178 |
| Eco88I | CYCGRG | 2 cut(s) | 273, 881 |
| EcoICRI | GAGCTC | 2 cut(s) | 953, 2114 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 999, 1917 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1526, 1747, 1748, 2078, 2371 |
| EcoRII | CCWGG | 9 cut(s) | 65, 680, 966, 1018, 1331, 1845, 2032, 2073, 2490 |
| EcoRV | GATATC | 2 cut(s) | 868, 1957 |
| EcoT14I | CCWWGG | 1 cut(s) | 525 |
| EcoT22I | ATGCAT | 1 cut(s) | 783 |
| EcoT38I | GRGCYC | 5 cut(s) | 274, 955, 1751, 1809, 2116 |
| EgeI | GGCGCC | 1 cut(s) | 748 |
| EheI | GGCGCC | 1 cut(s) | 748 |
| ErhI | CCWWGG | 1 cut(s) | 525 |
| FaeI | CATG | 8 cut(s) | 202, 494, 529, 763, 1325, 1649, 1825, 1928 |
| FaqI | GGGAC | 3 cut(s) | 1539, 1754, 2069 |
| FatI | CATG | 8 cut(s) | 198, 490, 525, 759, 1321, 1645, 1821, 1924 |
| FauI | CCCGC | 5 cut(s) | 261, 879, 1304, 1729, 1816 |
| FauNDI | CATATG | 1 cut(s) | 1459 |
| FblI | GTMKAC | 1 cut(s) | 510 |
| FokI | GGATG | 4 cut(s) | 211, 431, 768, 2570 |
| FriOI | GRGCYC | 5 cut(s) | 274, 955, 1751, 1809, 2116 |
| FspBI | CTAG | 6 cut(s) | 98, 281, 2052, 2303, 2471, 2544 |
| GsaI | CCCAGC | 2 cut(s) | 164, 1467 |
| GsuI | CTGGAG | 2 cut(s) | 981, 2016 |
| HaeII | RGCGCY | 4 cut(s) | 549, 750, 1679, 2471 |
| HgaI | GACGC | 5 cut(s) | 917, 1646, 1671, 2311, 2549 |
| Hin1I | GRCGYC | 3 cut(s) | 747, 909, 1767 |
| Hin1II | CATG | 8 cut(s) | 202, 494, 529, 763, 1325, 1649, 1825, 1928 |
| HincII | GTYRAC | 1 cut(s) | 511 |
| HindII | GTYRAC | 1 cut(s) | 511 |
| HinfI | GANTC | 7 cut(s) | 256, 503, 1241, 1828, 2070, 2297, 2317 |
| HphI | GGTGA | 6 cut(s) | 104, 134, 298, 1035, 1677, 2129 |
| Hpy166II | GTNNAC | 3 cut(s) | 239, 511, 989 |
| Hpy8I | GTNNAC | 3 cut(s) | 239, 511, 989 |
| Hpy99I | CGWCG | 5 cut(s) | 778, 1268, 1446, 1910, 2543 |
| HpyCH4III | ACNGT | 2 cut(s) | 1279, 2416 |
| HpyCH4IV | ACGT | 3 cut(s) | 798, 1767, 2146 |
| HpySE526I | ACGT | 3 cut(s) | 798, 1767, 2146 |
| Hsp92I | GRCGYC | 3 cut(s) | 747, 909, 1767 |
| Hsp92II | CATG | 8 cut(s) | 202, 494, 529, 763, 1325, 1649, 1825, 1928 |
| KasI | GGCGCC | 1 cut(s) | 746 |
| Kpn2I | TCCGGA | 1 cut(s) | 803 |
| LguI | GCTCTTC | 1 cut(s) | 1480 |
| LmnI | GCTCC | 5 cut(s) | 10, 958, 1378, 2032, 2440 |
| LweI | GCATC | 5 cut(s) | 178, 768, 790, 1939, 2571 |
| MaeI | CTAG | 6 cut(s) | 98, 281, 2052, 2303, 2471, 2544 |
| MaeII | ACGT | 3 cut(s) | 798, 1767, 2146 |
| MaeIII | GTNAC | 5 cut(s) | 1279, 1683, 1763, 2410, 2416 |
| MflI | RGATCY | 5 cut(s) | 277, 831, 1651, 2329, 2337 |
| MlsI | TGGCCA | 1 cut(s) | 223 |
| MluCI | AATT | 9 cut(s) | 41, 217, 497, 612, 641, 981, 1392, 2165, 2405 |
| MluNI | TGGCCA | 1 cut(s) | 223 |
| Mly113I | GGCGCC | 1 cut(s) | 747 |
| MlyI | GAGTC | 3 cut(s) | 497, 2064, 2291 |
| MmeI | TCCRAC | 1 cut(s) | 420 |
| Mox20I | TGGCCA | 1 cut(s) | 223 |
| Mph1103I | ATGCAT | 1 cut(s) | 783 |
| MroI | TCCGGA | 1 cut(s) | 803 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1536, 2511 |
| MscI | TGGCCA | 1 cut(s) | 223 |
| MseI | TTAA | 2 cut(s) | 1178, 2462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| Msp20I | TGGCCA | 1 cut(s) | 223 |
| MspA1I | CMGCKG | 7 cut(s) | 1052, 1097, 1481, 1811, 1946, 2105, 2228 |
| MteI | GCGCNGCGC | 2 cut(s) | 544, 1013 |
| Mva1269I | GAATGC | 3 cut(s) | 90, 298, 1627 |
| MvaI | CCWGG | 9 cut(s) | 67, 682, 968, 1020, 1333, 1847, 2034, 2075, 2492 |
| NarI | GGCGCC | 1 cut(s) | 747 |
| NciI | CCSGG | 4 cut(s) | 151, 590, 962, 2097 |
| NcoI | CCATGG | 1 cut(s) | 525 |
| NdeI | CATATG | 1 cut(s) | 1459 |
| NheI | GCTAGC | 1 cut(s) | 2543 |
| NlaIII | CATG | 8 cut(s) | 202, 494, 529, 763, 1325, 1649, 1825, 1928 |
| NmuCI | GTSAC | 4 cut(s) | 1683, 1763, 2410, 2416 |
| NotI | GCGGCCGC | 1 cut(s) | 2229 |
| NruI | TCGCGA | 2 cut(s) | 261, 1507 |
| NsiI | ATGCAT | 1 cut(s) | 783 |
| NspI | RCATGY | 1 cut(s) | 763 |
| PaeI | GCATGC | 1 cut(s) | 763 |
| PasI | CCCWGGG | 1 cut(s) | 1332 |
| PauI | GCGCGC | 2 cut(s) | 2501, 2527 |
| PceI | AGGCCT | 1 cut(s) | 919 |
| PciSI | GCTCTTC | 1 cut(s) | 1480 |
| PctI | GAATGC | 3 cut(s) | 90, 298, 1627 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1536, 2511 |
| PfeI | GAWTC | 4 cut(s) | 256, 1241, 1828, 2317 |
| PflFI | GACNNNGTC | 1 cut(s) | 506 |
| PinAI | ACCGGT | 1 cut(s) | 736 |
| Ple19I | CGATCG | 3 cut(s) | 1659, 1905, 2311 |
| PleI | GAGTC | 3 cut(s) | 497, 2064, 2291 |
| PluTI | GGCGCC | 1 cut(s) | 750 |
| PpsI | GAGTC | 3 cut(s) | 497, 2064, 2291 |
| PpuMI | RGGWCCY | 3 cut(s) | 1526, 2078, 2371 |
| PshAI | GACNNNNGTC | 1 cut(s) | 527 |
| Psp124BI | GAGCTC | 2 cut(s) | 955, 2116 |
| Psp1406I | AACGTT | 1 cut(s) | 798 |
| Psp5II | RGGWCCY | 3 cut(s) | 1526, 2078, 2371 |
| Psp6I | CCWGG | 9 cut(s) | 65, 680, 966, 1018, 1331, 1845, 2032, 2073, 2490 |
| PspFI | CCCAGC | 2 cut(s) | 160, 1463 |
| PspGI | CCWGG | 9 cut(s) | 65, 680, 966, 1018, 1331, 1845, 2032, 2073, 2490 |
| PspOMI | GGGCCC | 2 cut(s) | 270, 1747 |
| PspPPI | RGGWCCY | 3 cut(s) | 1526, 2078, 2371 |
| PstI | CTGCAG | 2 cut(s) | 301, 2067 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2491 |
| PsuI | RGATCY | 5 cut(s) | 277, 831, 1651, 2329, 2337 |
| PsyI | GACNNNGTC | 1 cut(s) | 506 |
| PteI | GCGCGC | 2 cut(s) | 2501, 2527 |
| PvuI | CGATCG | 3 cut(s) | 1659, 1905, 2311 |
| PvuII | CAGCTG | 3 cut(s) | 1097, 1481, 2105 |
| RruI | TCGCGA | 2 cut(s) | 261, 1507 |
| RsaI | GTAC | 8 cut(s) | 203, 767, 1080, 1218, 1881, 2016, 2133, 2149 |
| RsaNI | GTAC | 8 cut(s) | 202, 766, 1079, 1217, 1880, 2015, 2132, 2148 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SacI | GAGCTC | 2 cut(s) | 955, 2116 |
| SalI | GTCGAC | 1 cut(s) | 509 |
| SapI | GCTCTTC | 1 cut(s) | 1480 |
| SaqAI | TTAA | 2 cut(s) | 1178, 2462 |
| ScaI | AGTACT | 2 cut(s) | 1080, 1218 |
| SchI | GAGTC | 3 cut(s) | 497, 2064, 2291 |
| SfaNI | GCATC | 5 cut(s) | 178, 768, 790, 1939, 2571 |
| SfcI | CTRYAG | 4 cut(s) | 297, 1230, 1290, 2063 |
| SfoI | GGCGCC | 1 cut(s) | 748 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1672 |
| SinI | GGWCC | 8 cut(s) | 63, 529, 684, 806, 1526, 2078, 2358, 2371 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| SmlI | CTYRAG | 5 cut(s) | 1488, 1713, 1914, 2115, 2496 |
| SmoI | CTYRAG | 5 cut(s) | 1488, 1713, 1914, 2115, 2496 |
| SphI | GCATGC | 1 cut(s) | 763 |
| Sse9I | AATT | 9 cut(s) | 41, 217, 497, 612, 641, 981, 1392, 2165, 2405 |
| SseBI | AGGCCT | 1 cut(s) | 919 |
| SspDI | GGCGCC | 1 cut(s) | 746 |
| SspI | AATATT | 1 cut(s) | 629 |
| SspMI | CTAG | 6 cut(s) | 98, 281, 2052, 2303, 2471, 2544 |
| SstI | GAGCTC | 2 cut(s) | 955, 2116 |
| StuI | AGGCCT | 1 cut(s) | 919 |
| StyI | CCWWGG | 1 cut(s) | 525 |
| TaaI | ACNGT | 2 cut(s) | 1279, 2416 |
| TaiI | ACGT | 3 cut(s) | 801, 1770, 2149 |
| TaqI | TCGA | 8 cut(s) | 27, 471, 510, 1908, 2019, 2311, 2391, 2515 |
| TasI | AATT | 9 cut(s) | 41, 217, 497, 612, 641, 981, 1392, 2165, 2405 |
| TatI | WGTACW | 2 cut(s) | 1078, 1216 |
| TauI | GCSGC | 9 cut(s) | 717, 1015, 1026, 1029, 1052, 1898, 1946, 2231, 2234 |
| TfiI | GAWTC | 4 cut(s) | 256, 1241, 1828, 2317 |
| Tru1I | TTAA | 2 cut(s) | 1178, 2462 |
| Tru9I | TTAA | 2 cut(s) | 1178, 2462 |
| TscAI | CASTG | 4 cut(s) | 463, 679, 1561, 2161 |
| TseFI | GTSAC | 4 cut(s) | 1683, 1763, 2410, 2416 |
| Tsp45I | GTSAC | 4 cut(s) | 1683, 1763, 2410, 2416 |
| TspDTI | ATGAA | 9 cut(s) | 83, 549, 634, 1359, 1623, 1830, 2061, 2178, 2229 |
| TspGWI | ACGGA | 1 cut(s) | 1628 |
| TspRI | CASTG | 4 cut(s) | 463, 679, 1561, 2161 |
| Tth111I | GACNNNGTC | 1 cut(s) | 506 |
| VneI | GTGCAC | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 8 cut(s) | 63, 529, 684, 806, 1526, 2078, 2358, 2371 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 999, 1917 |
| XapI | RAATTY | 2 cut(s) | 641, 2165 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XceI | RCATGY | 1 cut(s) | 763 |
| XmiI | GTMKAC | 1 cut(s) | 510 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1536, 2511 |
| XspI | CTAG | 6 cut(s) | 98, 281, 2052, 2303, 2471, 2544 |
| ZraI | GACGTC | 1 cut(s) | 1768 |
| ZrmI | AGTACT | 2 cut(s) | 1080, 1218 |
| Zsp2I | ATGCAT | 1 cut(s) | 783 |