Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 308 |
| Acc65I | GGTACC | 1 cut(s) | 83 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccBSI | CCGCTC | 1 cut(s) | 379 |
| AccII | CGCG | 6 cut(s) | 279, 286, 358, 360, 383, 620 |
| AciI | CCGC | 9 cut(s) | 286, 356, 360, 363, 377, 383, 408, 627, 720 |
| AcoI | YGGCCR | 3 cut(s) | 183, 239, 717 |
| AcsI | RAATTY | 1 cut(s) | 659 |
| AcyI | GRCGYC | 1 cut(s) | 189 |
| AfaI | GTAC | 3 cut(s) | 85, 647, 697 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 66, 67, 156, 231, 262, 362, 491, 715 |
| AgeI | ACCGGT | 1 cut(s) | 741 |
| AjnI | CCWGG | 2 cut(s) | 639, 708 |
| AluBI | AGCT | 1 cut(s) | 43 |
| AluI | AGCT | 1 cut(s) | 43 |
| Ama87I | CYCGRG | 1 cut(s) | 733 |
| AoxI | GGCC | 8 cut(s) | 158, 183, 205, 239, 264, 384, 546, 717 |
| ApeKI | GCWGC | 2 cut(s) | 314, 561 |
| ApoI | RAATTY | 1 cut(s) | 659 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 416, 448 |
| AsiGI | ACCGGT | 1 cut(s) | 741 |
| Asp718I | GGTACC | 1 cut(s) | 83 |
| AspLEI | GCGC | 2 cut(s) | 360, 566 |
| AspS9I | GGNCC | 2 cut(s) | 158, 547 |
| AsuC2I | CCSGG | 1 cut(s) | 608 |
| AsuHPI | GGTGA | 4 cut(s) | 316, 442, 466, 526 |
| AvaI | CYCGRG | 1 cut(s) | 733 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 67, 100 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 2 cut(s) | 501, 734 |
| BbvI | GCAGC | 2 cut(s) | 326, 573 |
| BccI | CCATC | 8 cut(s) | 116, 120, 200, 257, 357, 479, 485, 582 |
| BceAI | ACGGC | 3 cut(s) | 220, 226, 732 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BciT130I | CCWGG | 2 cut(s) | 641, 710 |
| BcnI | CCSGG | 1 cut(s) | 608 |
| BfoI | RGCGCY | 1 cut(s) | 567 |
| BfuAI | ACCTGC | 1 cut(s) | 308 |
| BglII | AGATCT | 1 cut(s) | 295 |
| BisI | GCNGC | 7 cut(s) | 315, 361, 364, 377, 384, 562, 720 |
| BlsI | GCNGC | 7 cut(s) | 316, 362, 365, 378, 385, 563, 721 |
| BmcAI | AGTACT | 1 cut(s) | 647 |
| Bme1390I | CCNGG | 3 cut(s) | 608, 641, 710 |
| BmeT110I | CYCGRG | 1 cut(s) | 733 |
| BmgT120I | GGNCC | 2 cut(s) | 158, 547 |
| BmiI | GGNNCC | 4 cut(s) | 73, 85, 159, 577 |
| BmrFI | CCNGG | 3 cut(s) | 608, 641, 710 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 163, 456 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 1 cut(s) | 662 |
| BpuMI | CCSGG | 1 cut(s) | 608 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 1 cut(s) | 543 |
| BsaWI | WCCGGW | 2 cut(s) | 149, 741 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 66, 67, 156, 231, 262, 362, 491, 715 |
| Bse118I | RCCGGY | 3 cut(s) | 476, 623, 741 |
| Bse1I | ACTGG | 3 cut(s) | 159, 653, 697 |
| BseBI | CCWGG | 2 cut(s) | 641, 710 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 1 cut(s) | 543 |
| BseGI | GGATG | 1 cut(s) | 108 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 66, 67, 156, 231, 262, 362, 491, 715 |
| BseNI | ACTGG | 3 cut(s) | 159, 653, 697 |
| BseRI | GAGGAG | 2 cut(s) | 50, 53 |
| BseX3I | CGGCCG | 2 cut(s) | 183, 717 |
| BseXI | GCAGC | 2 cut(s) | 326, 573 |
| BseYI | CCCAGC | 1 cut(s) | 256 |
| BsgI | GTGCAG | 1 cut(s) | 655 |
| Bsh1236I | CGCG | 6 cut(s) | 279, 286, 358, 360, 383, 620 |
| Bsh1285I | CGRYCG | 4 cut(s) | 186, 559, 624, 720 |
| BshFI | GGCC | 8 cut(s) | 160, 185, 207, 241, 266, 386, 548, 719 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BshTI | ACCGGT | 1 cut(s) | 741 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 4 cut(s) | 186, 559, 624, 720 |
| BsiHKCI | CYCGRG | 1 cut(s) | 733 |
| BsiSI | CCGG | 6 cut(s) | 150, 182, 477, 607, 624, 742 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 66, 67, 156, 231, 262, 362, 491, 715 |
| BsmI | GAATGC | 1 cut(s) | 316 |
| BsnI | GGCC | 8 cut(s) | 160, 185, 207, 241, 266, 386, 548, 719 |
| BsoBI | CYCGRG | 1 cut(s) | 733 |
| Bsp1286I | GDGCHC | 2 cut(s) | 501, 734 |
| Bsp143I | GATC | 3 cut(s) | 28, 295, 337 |
| Bsp19I | CCATGG | 1 cut(s) | 543 |
| Bsp68I | TCGCGA | 1 cut(s) | 279 |
| BspACI | CCGC | 9 cut(s) | 286, 356, 360, 363, 377, 383, 408, 627, 720 |
| BspANI | GGCC | 8 cut(s) | 160, 185, 207, 241, 266, 386, 548, 719 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 6 cut(s) | 279, 286, 358, 360, 383, 620 |
| BspLI | GGNNCC | 4 cut(s) | 73, 85, 159, 577 |
| BspMI | ACCTGC | 1 cut(s) | 308 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BsrBI | CCGCTC | 1 cut(s) | 379 |
| BsrFI | RCCGGY | 3 cut(s) | 476, 623, 741 |
| BsrI | ACTGG | 3 cut(s) | 159, 653, 697 |
| BssAI | RCCGGY | 3 cut(s) | 476, 623, 741 |
| BssECI | CCNNGG | 1 cut(s) | 543 |
| BssMI | GATC | 3 cut(s) | 28, 295, 337 |
| BssNI | GRCGYC | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 1 cut(s) | 543 |
| Bst2UI | CCWGG | 2 cut(s) | 641, 710 |
| Bst4CI | ACNGT | 2 cut(s) | 557, 572 |
| BstACI | GRCGYC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 7 cut(s) | 162, 288, 374, 381, 482, 594, 686 |
| BstDSI | CCRYGG | 1 cut(s) | 543 |
| BstF5I | GGATG | 1 cut(s) | 108 |
| BstFNI | CGCG | 6 cut(s) | 279, 286, 358, 360, 383, 620 |
| BstH2I | RGCGCY | 1 cut(s) | 567 |
| BstHHI | GCGC | 2 cut(s) | 360, 566 |
| BstKTI | GATC | 3 cut(s) | 31, 298, 340 |
| BstMBI | GATC | 3 cut(s) | 28, 295, 337 |
| BstMCI | CGRYCG | 4 cut(s) | 186, 559, 624, 720 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 182, 369, 719 |
| BstNI | CCWGG | 2 cut(s) | 641, 710 |
| BstSCI | CCNGG | 3 cut(s) | 606, 639, 708 |
| BstUI | CGCG | 6 cut(s) | 279, 286, 358, 360, 383, 620 |
| BstV1I | GCAGC | 2 cut(s) | 326, 573 |
| BstX2I | RGATCY | 1 cut(s) | 295 |
| BstYI | RGATCY | 1 cut(s) | 295 |
| BstZI | CGGCCG | 2 cut(s) | 183, 717 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 8 cut(s) | 160, 185, 207, 241, 266, 386, 548, 719 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 1 cut(s) | 543 |
| BtsCI | GGATG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 2 cut(s) | 577, 690 |
| BtuMI | TCGCGA | 1 cut(s) | 279 |
| BveI | ACCTGC | 1 cut(s) | 308 |
| Cac8I | GCNNGC | 7 cut(s) | 162, 288, 374, 381, 482, 594, 686 |
| CfoI | GCGC | 2 cut(s) | 360, 566 |
| Cfr10I | RCCGGY | 3 cut(s) | 476, 623, 741 |
| Cfr13I | GGNCC | 2 cut(s) | 158, 547 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 3 cut(s) | 84, 646, 696 |
| CspAI | ACCGGT | 1 cut(s) | 741 |
| CviAII | CATG | 2 cut(s) | 509, 544 |
| CviQI | GTAC | 3 cut(s) | 84, 646, 696 |
| DpnI | GATC | 3 cut(s) | 30, 297, 339 |
| DpnII | GATC | 3 cut(s) | 28, 295, 337 |
| EaeI | YGGCCR | 3 cut(s) | 183, 239, 717 |
| EagI | CGGCCG | 2 cut(s) | 183, 717 |
| EciI | GGCGGA | 1 cut(s) | 642 |
| EclXI | CGGCCG | 2 cut(s) | 183, 717 |
| Eco130I | CCWWGG | 1 cut(s) | 543 |
| Eco147I | AGGCCT | 1 cut(s) | 266 |
| Eco24I | GRGCYC | 2 cut(s) | 501, 734 |
| Eco52I | CGGCCG | 2 cut(s) | 183, 717 |
| Eco88I | CYCGRG | 1 cut(s) | 733 |
| EcoRII | CCWGG | 2 cut(s) | 639, 708 |
| EcoT14I | CCWWGG | 1 cut(s) | 543 |
| EcoT38I | GRGCYC | 2 cut(s) | 501, 734 |
| ErhI | CCWWGG | 1 cut(s) | 543 |
| FaeI | CATG | 2 cut(s) | 512, 547 |
| FaiI | YATR | 7 cut(s) | 63, 92, 330, 343, 510, 545, 603 |
| FatI | CATG | 2 cut(s) | 508, 543 |
| FauI | CCCGC | 2 cut(s) | 279, 363 |
| Fnu4HI | GCNGC | 7 cut(s) | 315, 361, 364, 377, 384, 562, 720 |
| FokI | GGATG | 1 cut(s) | 95 |
| FriOI | GRGCYC | 2 cut(s) | 501, 734 |
| Fsp4HI | GCNGC | 7 cut(s) | 315, 361, 364, 377, 384, 562, 720 |
| GlaI | GCGC | 2 cut(s) | 359, 565 |
| GluI | GCNGC | 7 cut(s) | 315, 361, 364, 377, 384, 562, 720 |
| GsaI | CCCAGC | 1 cut(s) | 260 |
| GsuI | CTGGAG | 1 cut(s) | 662 |
| HaeII | RGCGCY | 1 cut(s) | 567 |
| HaeIII | GGCC | 8 cut(s) | 160, 185, 207, 241, 266, 386, 548, 719 |
| HapII | CCGG | 6 cut(s) | 150, 182, 477, 607, 624, 742 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 2 cut(s) | 360, 566 |
| Hin1I | GRCGYC | 1 cut(s) | 189 |
| Hin1II | CATG | 2 cut(s) | 512, 547 |
| Hin6I | GCGC | 2 cut(s) | 358, 564 |
| HinP1I | GCGC | 2 cut(s) | 358, 564 |
| HincII | GTYRAC | 1 cut(s) | 529 |
| HindII | GTYRAC | 1 cut(s) | 529 |
| HinfI | GANTC | 6 cut(s) | 4, 132, 432, 521, 630, 703 |
| HpaII | CCGG | 6 cut(s) | 150, 182, 477, 607, 624, 742 |
| HphI | GGTGA | 4 cut(s) | 316, 442, 466, 526 |
| Hpy166II | GTNNAC | 1 cut(s) | 529 |
| Hpy188I | TCNGA | 1 cut(s) | 139 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 278, 400 |
| Hpy8I | GTNNAC | 1 cut(s) | 529 |
| Hpy99I | CGWCG | 2 cut(s) | 191, 718 |
| HpyAV | CCTTC | 2 cut(s) | 137, 688 |
| HpyCH4III | ACNGT | 2 cut(s) | 557, 572 |
| HpyCH4V | TGCA | 4 cut(s) | 314, 657, 672, 684 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 182, 369, 719 |
| Hsp92I | GRCGYC | 1 cut(s) | 189 |
| Hsp92II | CATG | 2 cut(s) | 512, 547 |
| HspAI | GCGC | 2 cut(s) | 358, 564 |
| KpnI | GGTACC | 1 cut(s) | 87 |
| Kzo9I | GATC | 3 cut(s) | 28, 295, 337 |
| LmnI | GCTCC | 2 cut(s) | 40, 129 |
| Lsp1109I | GCAGC | 2 cut(s) | 326, 573 |
| LweI | GCATC | 2 cut(s) | 163, 456 |
| MalI | GATC | 3 cut(s) | 30, 297, 339 |
| MbiI | CCGCTC | 1 cut(s) | 379 |
| MboI | GATC | 3 cut(s) | 28, 295, 337 |
| MboII | GAAGA | 2 cut(s) | 25, 658 |
| MflI | RGATCY | 1 cut(s) | 295 |
| MhlI | GDGCHC | 2 cut(s) | 501, 734 |
| MluCI | AATT | 3 cut(s) | 93, 515, 659 |
| MlyI | GAGTC | 1 cut(s) | 697 |
| MmeI | TCCRAC | 2 cut(s) | 162, 287 |
| MnlI | CCTC | 7 cut(s) | 28, 31, 256, 256, 277, 547, 685 |
| MspI | CCGG | 6 cut(s) | 150, 182, 477, 607, 624, 742 |
| MspR9I | CCNGG | 3 cut(s) | 608, 641, 710 |
| Mva1269I | GAATGC | 1 cut(s) | 316 |
| MvaI | CCWGG | 2 cut(s) | 641, 710 |
| MvnI | CGCG | 6 cut(s) | 279, 286, 358, 360, 383, 620 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 182, 369, 719 |
| NciI | CCSGG | 1 cut(s) | 608 |
| NcoI | CCATGG | 1 cut(s) | 543 |
| NdeII | GATC | 3 cut(s) | 28, 295, 337 |
| NlaIII | CATG | 2 cut(s) | 512, 547 |
| NlaIV | GGNNCC | 4 cut(s) | 73, 85, 159, 577 |
| NruI | TCGCGA | 1 cut(s) | 279 |
| PceI | AGGCCT | 1 cut(s) | 266 |
| PctI | GAATGC | 1 cut(s) | 316 |
| PfeI | GAWTC | 4 cut(s) | 132, 432, 521, 630 |
| PfoI | TCCNGGA | 1 cut(s) | 639 |
| PinAI | ACCGGT | 1 cut(s) | 741 |
| PkrI | GCNGC | 7 cut(s) | 316, 362, 365, 378, 385, 563, 721 |
| PleI | GAGTC | 1 cut(s) | 697 |
| PpsI | GAGTC | 1 cut(s) | 697 |
| Psp6I | CCWGG | 2 cut(s) | 639, 708 |
| PspFI | CCCAGC | 1 cut(s) | 256 |
| PspGI | CCWGG | 2 cut(s) | 639, 708 |
| PspN4I | GGNNCC | 4 cut(s) | 73, 85, 159, 577 |
| PspPI | GGNCC | 2 cut(s) | 158, 547 |
| PsuI | RGATCY | 1 cut(s) | 295 |
| RruI | TCGCGA | 1 cut(s) | 279 |
| RsaI | GTAC | 3 cut(s) | 85, 647, 697 |
| RsaNI | GTAC | 3 cut(s) | 84, 646, 696 |
| SatI | GCNGC | 7 cut(s) | 315, 361, 364, 377, 384, 562, 720 |
| Sau3AI | GATC | 3 cut(s) | 28, 295, 337 |
| Sau96I | GGNCC | 2 cut(s) | 158, 547 |
| ScaI | AGTACT | 1 cut(s) | 647 |
| SchI | GAGTC | 1 cut(s) | 697 |
| ScrFI | CCNGG | 3 cut(s) | 608, 641, 710 |
| SduI | GDGCHC | 2 cut(s) | 501, 734 |
| SetI | ASST | 4 cut(s) | 45, 322, 539, 677 |
| SfaNI | GCATC | 2 cut(s) | 163, 456 |
| Sse9I | AATT | 3 cut(s) | 93, 515, 659 |
| SseBI | AGGCCT | 1 cut(s) | 266 |
| SsiI | CCGC | 9 cut(s) | 286, 356, 360, 363, 377, 383, 408, 627, 720 |
| StuI | AGGCCT | 1 cut(s) | 266 |
| StyD4I | CCNGG | 3 cut(s) | 606, 639, 708 |
| StyI | CCWWGG | 1 cut(s) | 543 |
| TaaI | ACNGT | 2 cut(s) | 557, 572 |
| TaqI | TCGA | 5 cut(s) | 27, 115, 130, 220, 519 |
| TaqII | GACCGA | 1 cut(s) | 425 |
| TasI | AATT | 3 cut(s) | 93, 515, 659 |
| TatI | WGTACW | 1 cut(s) | 645 |
| TauI | GCSGC | 5 cut(s) | 363, 366, 379, 386, 722 |
| TfiI | GAWTC | 4 cut(s) | 132, 432, 521, 630 |
| TscAI | CASTG | 2 cut(s) | 577, 697 |
| TseI | GCWGC | 2 cut(s) | 314, 561 |
| TspRI | CASTG | 2 cut(s) | 577, 697 |
| XapI | RAATTY | 1 cut(s) | 659 |
| ZrmI | AGTACT | 1 cut(s) | 647 |