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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 87, 90 |
| AcoI | YGGCCR | 1 cut(s) | 214 |
| AcsI | RAATTY | 2 cut(s) | 233, 278 |
| AluBI | AGCT | 1 cut(s) | 68 |
| AluI | AGCT | 1 cut(s) | 68 |
| AoxI | GGCC | 1 cut(s) | 214 |
| ApeKI | GCWGC | 1 cut(s) | 184 |
| ApoI | RAATTY | 2 cut(s) | 233, 278 |
| AsuC2I | CCSGG | 1 cut(s) | 60 |
| AsuHPI | GGTGA | 2 cut(s) | 19, 69 |
| BalI | TGGCCA | 1 cut(s) | 216 |
| BanII | GRGCYC | 1 cut(s) | 204 |
| BbvI | GCAGC | 1 cut(s) | 171 |
| BcnI | CCSGG | 1 cut(s) | 60 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BisI | GCNGC | 3 cut(s) | 87, 90, 185 |
| BlsI | GCNGC | 3 cut(s) | 88, 91, 186 |
| Bme1390I | CCNGG | 1 cut(s) | 60 |
| BmrFI | CCNGG | 1 cut(s) | 60 |
| BmsI | GCATC | 1 cut(s) | 33 |
| BpmI | CTGGAG | 1 cut(s) | 97 |
| BpuMI | CCSGG | 1 cut(s) | 60 |
| Bsa29I | ATCGAT | 1 cut(s) | 39 |
| BsaJI | CCNNGG | 1 cut(s) | 58 |
| Bse118I | RCCGGY | 1 cut(s) | 257 |
| Bse1I | ACTGG | 1 cut(s) | 114 |
| BseCI | ATCGAT | 1 cut(s) | 39 |
| BseDI | CCNNGG | 1 cut(s) | 58 |
| BseMII | CTCAG | 1 cut(s) | 30 |
| BseNI | ACTGG | 1 cut(s) | 114 |
| BseXI | GCAGC | 1 cut(s) | 171 |
| BshFI | GGCC | 1 cut(s) | 216 |
| BshVI | ATCGAT | 1 cut(s) | 39 |
| BsiSI | CCGG | 2 cut(s) | 60, 258 |
| BsmI | GAATGC | 1 cut(s) | 252 |
| BsnI | GGCC | 1 cut(s) | 216 |
| Bsp1286I | GDGCHC | 1 cut(s) | 204 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| BspACI | CCGC | 2 cut(s) | 87, 90 |
| BspANI | GGCC | 1 cut(s) | 216 |
| BspCNI | CTCAG | 1 cut(s) | 29 |
| BspDI | ATCGAT | 1 cut(s) | 39 |
| BsrFI | RCCGGY | 1 cut(s) | 257 |
| BsrI | ACTGG | 1 cut(s) | 114 |
| BssAI | RCCGGY | 1 cut(s) | 257 |
| BssECI | CCNNGG | 1 cut(s) | 58 |
| BssMI | GATC | 1 cut(s) | 40 |
| BstC8I | GCNNGC | 1 cut(s) | 259 |
| BstDEI | CTNAG | 1 cut(s) | 16 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 263 |
| BstSCI | CCNGG | 1 cut(s) | 58 |
| BstV1I | GCAGC | 1 cut(s) | 171 |
| Bsu15I | ATCGAT | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 216 |
| BsuTUI | ATCGAT | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 1 cut(s) | 24 |
| Cac8I | GCNNGC | 1 cut(s) | 259 |
| Cfr10I | RCCGGY | 1 cut(s) | 257 |
| ClaI | ATCGAT | 1 cut(s) | 39 |
| CviAII | CATG | 2 cut(s) | 197, 212 |
| CviJI | RGCY | 7 cut(s) | 68, 86, 184, 202, 216, 257, 261 |
| CviKI_1 | RGCY | 7 cut(s) | 68, 86, 184, 202, 216, 257, 261 |
| DdeI | CTNAG | 1 cut(s) | 16 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| EaeI | YGGCCR | 1 cut(s) | 214 |
| Eco24I | GRGCYC | 1 cut(s) | 204 |
| EcoRI | GAATTC | 1 cut(s) | 233 |
| EcoT38I | GRGCYC | 1 cut(s) | 204 |
| FaeI | CATG | 2 cut(s) | 200, 215 |
| FaiI | YATR | 8 cut(s) | 46, 97, 152, 179, 198, 207, 213, 228 |
| FatI | CATG | 2 cut(s) | 196, 211 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 90, 185 |
| FriOI | GRGCYC | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 90, 185 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GluI | GCNGC | 3 cut(s) | 87, 90, 185 |
| GsuI | CTGGAG | 1 cut(s) | 97 |
| HaeIII | GGCC | 1 cut(s) | 216 |
| HapII | CCGG | 2 cut(s) | 60, 258 |
| Hin1II | CATG | 2 cut(s) | 200, 215 |
| HinfI | GANTC | 1 cut(s) | 54 |
| HpaII | CCGG | 2 cut(s) | 60, 258 |
| HphI | GGTGA | 2 cut(s) | 19, 69 |
| Hpy188I | TCNGA | 2 cut(s) | 134, 288 |
| Hpy188III | TCNNGA | 1 cut(s) | 243 |
| HpyAV | CCTTC | 1 cut(s) | 249 |
| HpyCH4V | TGCA | 2 cut(s) | 211, 250 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 263 |
| HpyF3I | CTNAG | 1 cut(s) | 16 |
| Hsp92II | CATG | 2 cut(s) | 200, 215 |
| KroI | GCCGGC | 1 cut(s) | 257 |
| KroNI | GCCGGC | 1 cut(s) | 259 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| LpnPI | CCDG | 3 cut(s) | 73, 127, 271 |
| Lsp1109I | GCAGC | 1 cut(s) | 171 |
| LweI | GCATC | 1 cut(s) | 33 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 1 cut(s) | 42 |
| MboI | GATC | 1 cut(s) | 40 |
| MhlI | GDGCHC | 1 cut(s) | 204 |
| MlsI | TGGCCA | 1 cut(s) | 216 |
| MluCI | AATT | 3 cut(s) | 218, 233, 278 |
| MluNI | TGGCCA | 1 cut(s) | 216 |
| MlyI | GAGTC | 1 cut(s) | 48 |
| MnlI | CCTC | 2 cut(s) | 90, 121 |
| Mox20I | TGGCCA | 1 cut(s) | 216 |
| MroNI | GCCGGC | 1 cut(s) | 257 |
| MscI | TGGCCA | 1 cut(s) | 216 |
| Msp20I | TGGCCA | 1 cut(s) | 216 |
| MspI | CCGG | 2 cut(s) | 60, 258 |
| MspR9I | CCNGG | 1 cut(s) | 60 |
| Mva1269I | GAATGC | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 263 |
| NaeI | GCCGGC | 1 cut(s) | 259 |
| NciI | CCSGG | 1 cut(s) | 60 |
| NdeII | GATC | 1 cut(s) | 40 |
| NgoMIV | GCCGGC | 1 cut(s) | 257 |
| NlaIII | CATG | 2 cut(s) | 200, 215 |
| PctI | GAATGC | 1 cut(s) | 252 |
| PdiI | GCCGGC | 1 cut(s) | 259 |
| PkrI | GCNGC | 3 cut(s) | 88, 91, 186 |
| PleI | GAGTC | 1 cut(s) | 48 |
| PpsI | GAGTC | 1 cut(s) | 48 |
| SatI | GCNGC | 3 cut(s) | 87, 90, 185 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| SchI | GAGTC | 1 cut(s) | 48 |
| ScrFI | CCNGG | 1 cut(s) | 60 |
| SduI | GDGCHC | 1 cut(s) | 204 |
| SetI | ASST | 4 cut(s) | 70, 82, 113, 125 |
| SfaNI | GCATC | 1 cut(s) | 33 |
| SgeI | CNNG | 9 cut(s) | 71, 72, 95, 126, 209, 224, 255, 266, 270 |
| Sse9I | AATT | 3 cut(s) | 218, 233, 278 |
| SsiI | CCGC | 2 cut(s) | 87, 90 |
| SspMI | CTAG | 1 cut(s) | 83 |
| StyD4I | CCNGG | 1 cut(s) | 58 |
| TaqI | TCGA | 2 cut(s) | 39, 52 |
| TasI | AATT | 3 cut(s) | 218, 233, 278 |
| TauI | GCSGC | 2 cut(s) | 89, 92 |
| TscAI | CASTG | 1 cut(s) | 24 |
| TseI | GCWGC | 1 cut(s) | 184 |
| TspRI | CASTG | 1 cut(s) | 24 |
| XapI | RAATTY | 2 cut(s) | 233, 278 |
| XspI | CTAG | 1 cut(s) | 83 |