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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 39 |
| AccI | GTMKAC | 1 cut(s) | 34 |
| AciI | CCGC | 3 cut(s) | 63, 166, 229 |
| AclWI | GGATC | 2 cut(s) | 306, 319 |
| AcoI | YGGCCR | 1 cut(s) | 158 |
| AcyI | GRCGYC | 3 cut(s) | 40, 98, 131 |
| AfaI | GTAC | 1 cut(s) | 267 |
| AfeI | AGCGCT | 1 cut(s) | 248 |
| AjnI | CCWGG | 1 cut(s) | 160 |
| AluBI | AGCT | 2 cut(s) | 278, 327 |
| AluI | AGCT | 2 cut(s) | 278, 327 |
| AlwI | GGATC | 2 cut(s) | 306, 319 |
| Aor51HI | AGCGCT | 1 cut(s) | 248 |
| AoxI | GGCC | 3 cut(s) | 26, 158, 298 |
| ApeKI | GCWGC | 3 cut(s) | 80, 244, 249 |
| AspLEI | GCGC | 2 cut(s) | 42, 249 |
| AspS9I | GGNCC | 2 cut(s) | 26, 298 |
| BalI | TGGCCA | 1 cut(s) | 160 |
| BamHI | GGATCC | 1 cut(s) | 311 |
| BanI | GGYRCC | 1 cut(s) | 39 |
| BbvI | GCAGC | 3 cut(s) | 67, 236, 256 |
| BceAI | ACGGC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 1 cut(s) | 162 |
| BfaI | CTAG | 1 cut(s) | 30 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BfoI | RGCGCY | 2 cut(s) | 43, 250 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 166 |
| BisI | GCNGC | 5 cut(s) | 81, 167, 230, 245, 250 |
| BlsI | GCNGC | 5 cut(s) | 82, 168, 231, 246, 251 |
| Bme1390I | CCNGG | 1 cut(s) | 162 |
| BmgT120I | GGNCC | 2 cut(s) | 26, 298 |
| BmiI | GGNNCC | 2 cut(s) | 41, 313 |
| BmrFI | CCNGG | 1 cut(s) | 162 |
| BmsI | GCATC | 1 cut(s) | 261 |
| BpuEI | CTTGAG | 1 cut(s) | 323 |
| BsaHI | GRCGYC | 3 cut(s) | 40, 98, 131 |
| BsaJI | CCNNGG | 1 cut(s) | 161 |
| BseBI | CCWGG | 1 cut(s) | 162 |
| BseDI | CCNNGG | 1 cut(s) | 161 |
| BseXI | GCAGC | 3 cut(s) | 67, 236, 256 |
| BshFI | GGCC | 3 cut(s) | 28, 160, 300 |
| BshNI | GGYRCC | 1 cut(s) | 39 |
| BsnI | GGCC | 3 cut(s) | 28, 160, 300 |
| Bsp143I | GATC | 1 cut(s) | 311 |
| BspACI | CCGC | 3 cut(s) | 63, 166, 229 |
| BspANI | GGCC | 3 cut(s) | 28, 160, 300 |
| BspLI | GGNNCC | 2 cut(s) | 41, 313 |
| BspMAI | CTGCAG | 1 cut(s) | 220 |
| BspPI | GGATC | 2 cut(s) | 306, 319 |
| BspT107I | GGYRCC | 1 cut(s) | 39 |
| BssECI | CCNNGG | 1 cut(s) | 161 |
| BssMI | GATC | 1 cut(s) | 311 |
| BssNI | GRCGYC | 3 cut(s) | 40, 98, 131 |
| Bst2UI | CCWGG | 1 cut(s) | 162 |
| Bst4CI | ACNGT | 1 cut(s) | 265 |
| BstACI | GRCGYC | 3 cut(s) | 40, 98, 131 |
| BstH2I | RGCGCY | 2 cut(s) | 43, 250 |
| BstHHI | GCGC | 2 cut(s) | 42, 249 |
| BstKTI | GATC | 1 cut(s) | 314 |
| BstMBI | GATC | 1 cut(s) | 311 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 157, 166 |
| BstNI | CCWGG | 1 cut(s) | 162 |
| BstSCI | CCNGG | 1 cut(s) | 160 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 3 cut(s) | 67, 236, 256 |
| BstX2I | RGATCY | 1 cut(s) | 311 |
| BstYI | RGATCY | 1 cut(s) | 311 |
| BsuRI | GGCC | 3 cut(s) | 28, 160, 300 |
| BtgZI | GCGATG | 1 cut(s) | 105 |
| CfoI | GCGC | 2 cut(s) | 42, 249 |
| Cfr13I | GGNCC | 2 cut(s) | 26, 298 |
| CseI | GACGC | 3 cut(s) | 72, 87, 120 |
| Csp6I | GTAC | 1 cut(s) | 266 |
| CviAII | CATG | 8 cut(s) | 66, 102, 110, 135, 144, 170, 187, 195 |
| CviJI | RGCY | 8 cut(s) | 5, 28, 123, 160, 278, 300, 327, 335 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 28, 123, 160, 278, 300, 327, 335 |
| CviQI | GTAC | 1 cut(s) | 266 |
| DinI | GGCGCC | 1 cut(s) | 41 |
| DpnI | GATC | 1 cut(s) | 313 |
| DpnII | GATC | 1 cut(s) | 311 |
| EaeI | YGGCCR | 1 cut(s) | 158 |
| Eco47III | AGCGCT | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 160 |
| EgeI | GGCGCC | 1 cut(s) | 41 |
| EheI | GGCGCC | 1 cut(s) | 41 |
| FaeI | CATG | 8 cut(s) | 69, 105, 113, 138, 147, 173, 190, 198 |
| FaiI | YATR | 9 cut(s) | 15, 67, 103, 111, 136, 145, 171, 188, 196 |
| FatI | CATG | 8 cut(s) | 65, 101, 109, 134, 143, 169, 186, 194 |
| FblI | GTMKAC | 1 cut(s) | 34 |
| Fnu4HI | GCNGC | 5 cut(s) | 81, 167, 230, 245, 250 |
| Fsp4HI | GCNGC | 5 cut(s) | 81, 167, 230, 245, 250 |
| FspBI | CTAG | 1 cut(s) | 30 |
| GlaI | GCGC | 2 cut(s) | 41, 248 |
| GluI | GCNGC | 5 cut(s) | 81, 167, 230, 245, 250 |
| HaeII | RGCGCY | 2 cut(s) | 43, 250 |
| HaeIII | GGCC | 3 cut(s) | 28, 160, 300 |
| HgaI | GACGC | 3 cut(s) | 72, 87, 120 |
| HhaI | GCGC | 2 cut(s) | 42, 249 |
| Hin1I | GRCGYC | 3 cut(s) | 40, 98, 131 |
| Hin1II | CATG | 8 cut(s) | 69, 105, 113, 138, 147, 173, 190, 198 |
| Hin6I | GCGC | 2 cut(s) | 40, 247 |
| HinP1I | GCGC | 2 cut(s) | 40, 247 |
| HincII | GTYRAC | 1 cut(s) | 35 |
| HindII | GTYRAC | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 2 cut(s) | 35, 284 |
| Hpy188I | TCNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 2 cut(s) | 35, 284 |
| Hpy99I | CGWCG | 2 cut(s) | 39, 88 |
| HpyAV | CCTTC | 2 cut(s) | 40, 302 |
| HpyCH4III | ACNGT | 1 cut(s) | 265 |
| HpyCH4V | TGCA | 3 cut(s) | 13, 218, 252 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 157, 166 |
| Hsp92I | GRCGYC | 3 cut(s) | 40, 98, 131 |
| Hsp92II | CATG | 8 cut(s) | 69, 105, 113, 138, 147, 173, 190, 198 |
| HspAI | GCGC | 2 cut(s) | 40, 247 |
| KasI | GGCGCC | 1 cut(s) | 39 |
| Kzo9I | GATC | 1 cut(s) | 311 |
| LpnPI | CCDG | 7 cut(s) | 56, 137, 147, 174, 228, 264, 281 |
| Lsp1109I | GCAGC | 3 cut(s) | 67, 236, 256 |
| LweI | GCATC | 1 cut(s) | 261 |
| MaeI | CTAG | 1 cut(s) | 30 |
| MalI | GATC | 1 cut(s) | 313 |
| MboI | GATC | 1 cut(s) | 311 |
| MflI | RGATCY | 1 cut(s) | 311 |
| MlsI | TGGCCA | 1 cut(s) | 160 |
| MluNI | TGGCCA | 1 cut(s) | 160 |
| Mly113I | GGCGCC | 1 cut(s) | 40 |
| MnlI | CCTC | 2 cut(s) | 111, 121 |
| Mox20I | TGGCCA | 1 cut(s) | 160 |
| MscI | TGGCCA | 1 cut(s) | 160 |
| MseI | TTAA | 1 cut(s) | 337 |
| Msp20I | TGGCCA | 1 cut(s) | 160 |
| MspR9I | CCNGG | 1 cut(s) | 162 |
| MvaI | CCWGG | 1 cut(s) | 162 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 157, 166 |
| NarI | GGCGCC | 1 cut(s) | 40 |
| NdeII | GATC | 1 cut(s) | 311 |
| NlaIII | CATG | 8 cut(s) | 69, 105, 113, 138, 147, 173, 190, 198 |
| NlaIV | GGNNCC | 2 cut(s) | 41, 313 |
| PkrI | GCNGC | 5 cut(s) | 82, 168, 231, 246, 251 |
| PluTI | GGCGCC | 1 cut(s) | 43 |
| Psp6I | CCWGG | 1 cut(s) | 160 |
| PspGI | CCWGG | 1 cut(s) | 160 |
| PspN4I | GGNNCC | 2 cut(s) | 41, 313 |
| PspPI | GGNCC | 2 cut(s) | 26, 298 |
| PstI | CTGCAG | 1 cut(s) | 220 |
| PsuI | RGATCY | 1 cut(s) | 311 |
| RsaI | GTAC | 1 cut(s) | 267 |
| RsaNI | GTAC | 1 cut(s) | 266 |
| SalI | GTCGAC | 1 cut(s) | 33 |
| SaqAI | TTAA | 1 cut(s) | 337 |
| SatI | GCNGC | 5 cut(s) | 81, 167, 230, 245, 250 |
| Sau3AI | GATC | 1 cut(s) | 311 |
| Sau96I | GGNCC | 2 cut(s) | 26, 298 |
| ScrFI | CCNGG | 1 cut(s) | 162 |
| SetI | ASST | 5 cut(s) | 20, 51, 280, 294, 329 |
| SfaNI | GCATC | 1 cut(s) | 261 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| SfoI | GGCGCC | 1 cut(s) | 41 |
| SmlI | CTYRAG | 1 cut(s) | 302 |
| SmoI | CTYRAG | 1 cut(s) | 302 |
| SsiI | CCGC | 3 cut(s) | 63, 166, 229 |
| SspDI | GGCGCC | 1 cut(s) | 39 |
| SspMI | CTAG | 1 cut(s) | 30 |
| StyD4I | CCNGG | 1 cut(s) | 160 |
| TaaI | ACNGT | 1 cut(s) | 265 |
| TaqI | TCGA | 4 cut(s) | 34, 86, 116, 126 |
| TauI | GCSGC | 2 cut(s) | 169, 232 |
| Tru1I | TTAA | 1 cut(s) | 337 |
| Tru9I | TTAA | 1 cut(s) | 337 |
| TseI | GCWGC | 3 cut(s) | 80, 244, 249 |
| TspDTI | ATGAA | 2 cut(s) | 132, 175 |
| XmiI | GTMKAC | 1 cut(s) | 34 |
| XspI | CTAG | 1 cut(s) | 30 |