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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 184 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 209 |
| AccBSI | CCGCTC | 1 cut(s) | 361 |
| AccII | CGCG | 3 cut(s) | 284, 367, 373 |
| AciI | CCGC | 3 cut(s) | 361, 365, 371 |
| AclWI | GGATC | 1 cut(s) | 249 |
| AcoI | YGGCCR | 1 cut(s) | 362 |
| AcuI | CTGAAG | 2 cut(s) | 44, 499 |
| AfaI | GTAC | 2 cut(s) | 158, 265 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 28 |
| AgsI | TTSAA | 1 cut(s) | 88 |
| AjiI | CACGTC | 2 cut(s) | 118, 165 |
| AjnI | CCWGG | 4 cut(s) | 174, 193, 237, 389 |
| AluBI | AGCT | 2 cut(s) | 91, 151 |
| AluI | AGCT | 2 cut(s) | 91, 151 |
| Alw26I | GTCTC | 1 cut(s) | 461 |
| AlwI | GGATC | 1 cut(s) | 249 |
| AoxI | GGCC | 5 cut(s) | 362, 392, 405, 518, 539 |
| ApeKI | GCWGC | 4 cut(s) | 97, 100, 103, 234 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 307 |
| AspLEI | GCGC | 1 cut(s) | 375 |
| AspS9I | GGNCC | 3 cut(s) | 393, 519, 540 |
| AsuC2I | CCSGG | 1 cut(s) | 543 |
| AsuHPI | GGTGA | 1 cut(s) | 51 |
| BanII | GRGCYC | 1 cut(s) | 258 |
| BauI | CACGAG | 1 cut(s) | 431 |
| BbvI | GCAGC | 4 cut(s) | 84, 87, 90, 221 |
| BccI | CCATC | 2 cut(s) | 301, 531 |
| BciT130I | CCWGG | 4 cut(s) | 176, 195, 239, 391 |
| BcnI | CCSGG | 1 cut(s) | 543 |
| BcoDI | GTCTC | 1 cut(s) | 461 |
| BfaI | CTAG | 2 cut(s) | 134, 442 |
| BfmI | CTRYAG | 1 cut(s) | 328 |
| BglII | AGATCT | 1 cut(s) | 510 |
| BisI | GCNGC | 6 cut(s) | 98, 101, 104, 235, 362, 365 |
| BlsI | GCNGC | 6 cut(s) | 99, 102, 105, 236, 363, 366 |
| BmcAI | AGTACT | 1 cut(s) | 265 |
| Bme1390I | CCNGG | 5 cut(s) | 176, 195, 239, 391, 543 |
| BmgBI | CACGTC | 2 cut(s) | 118, 165 |
| BmgT120I | GGNCC | 3 cut(s) | 393, 519, 540 |
| BmiI | GGNNCC | 1 cut(s) | 80 |
| BmrFI | CCNGG | 5 cut(s) | 176, 195, 239, 391, 543 |
| BpmI | CTGGAG | 4 cut(s) | 79, 197, 280, 478 |
| BpuEI | CTTGAG | 1 cut(s) | 288 |
| BpuMI | CCSGG | 1 cut(s) | 543 |
| BsaAI | YACGTR | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 2 cut(s) | 194, 389 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 23, 53, 320, 350 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 28 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| Bse1I | ACTGG | 2 cut(s) | 143, 495 |
| BseBI | CCWGG | 4 cut(s) | 176, 195, 239, 391 |
| BseDI | CCNNGG | 2 cut(s) | 194, 389 |
| BseGI | GGATG | 1 cut(s) | 244 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 28 |
| BseMII | CTCAG | 1 cut(s) | 290 |
| BseNI | ACTGG | 2 cut(s) | 143, 495 |
| BseRI | GAGGAG | 2 cut(s) | 161, 417 |
| BseX3I | CGGCCG | 1 cut(s) | 362 |
| BseXI | GCAGC | 4 cut(s) | 84, 87, 90, 221 |
| Bsh1236I | CGCG | 3 cut(s) | 284, 367, 373 |
| Bsh1285I | CGRYCG | 2 cut(s) | 365, 371 |
| BshFI | GGCC | 5 cut(s) | 364, 394, 407, 520, 541 |
| BsiEI | CGRYCG | 2 cut(s) | 365, 371 |
| BsiSI | CCGG | 2 cut(s) | 52, 543 |
| BslFI | GGGAC | 3 cut(s) | 206, 211, 483 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 28 |
| BsmAI | GTCTC | 1 cut(s) | 461 |
| BsmFI | GGGAC | 3 cut(s) | 206, 211, 483 |
| BsnI | GGCC | 5 cut(s) | 364, 394, 407, 520, 541 |
| Bsp1286I | GDGCHC | 1 cut(s) | 258 |
| Bsp143I | GATC | 3 cut(s) | 241, 476, 510 |
| Bsp68I | TCGCGA | 1 cut(s) | 284 |
| BspACI | CCGC | 3 cut(s) | 361, 365, 371 |
| BspANI | GGCC | 5 cut(s) | 364, 394, 407, 520, 541 |
| BspCNI | CTCAG | 1 cut(s) | 291 |
| BspFNI | CGCG | 3 cut(s) | 284, 367, 373 |
| BspLI | GGNNCC | 1 cut(s) | 80 |
| BspPI | GGATC | 1 cut(s) | 249 |
| BsrBI | CCGCTC | 1 cut(s) | 361 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BsrI | ACTGG | 2 cut(s) | 143, 495 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssECI | CCNNGG | 2 cut(s) | 194, 389 |
| BssMI | GATC | 3 cut(s) | 241, 476, 510 |
| BssSI | CACGAG | 1 cut(s) | 431 |
| Bst2BI | CACGAG | 1 cut(s) | 431 |
| Bst2UI | CCWGG | 4 cut(s) | 176, 195, 239, 391 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| BstBAI | YACGTR | 1 cut(s) | 156 |
| BstC8I | GCNNGC | 4 cut(s) | 8, 286, 290, 377 |
| BstDEI | CTNAG | 2 cut(s) | 299, 349 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 26 |
| BstF5I | GGATG | 1 cut(s) | 244 |
| BstFNI | CGCG | 3 cut(s) | 284, 367, 373 |
| BstHHI | GCGC | 1 cut(s) | 375 |
| BstKTI | GATC | 3 cut(s) | 244, 479, 513 |
| BstMAI | GTCTC | 1 cut(s) | 461 |
| BstMBI | GATC | 3 cut(s) | 241, 476, 510 |
| BstMCI | CGRYCG | 2 cut(s) | 365, 371 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 16, 25, 97, 103, 370, 385, 480, 538 |
| BstNI | CCWGG | 4 cut(s) | 176, 195, 239, 391 |
| BstSCI | CCNGG | 5 cut(s) | 174, 193, 237, 389, 541 |
| BstSFI | CTRYAG | 1 cut(s) | 328 |
| BstUI | CGCG | 3 cut(s) | 284, 367, 373 |
| BstV1I | GCAGC | 4 cut(s) | 84, 87, 90, 221 |
| BstX2I | RGATCY | 1 cut(s) | 510 |
| BstYI | RGATCY | 1 cut(s) | 510 |
| BstZI | CGGCCG | 1 cut(s) | 362 |
| BsuRI | GGCC | 5 cut(s) | 364, 394, 407, 520, 541 |
| BtrI | CACGTC | 2 cut(s) | 118, 165 |
| BtsCI | GGATG | 1 cut(s) | 244 |
| BtsIMutI | CAGTG | 1 cut(s) | 296 |
| BtuMI | TCGCGA | 1 cut(s) | 284 |
| Cac8I | GCNNGC | 4 cut(s) | 8, 286, 290, 377 |
| CciNI | GCGGCCGC | 1 cut(s) | 362 |
| CfoI | GCGC | 1 cut(s) | 375 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| Cfr13I | GGNCC | 3 cut(s) | 393, 519, 540 |
| Csp6I | GTAC | 2 cut(s) | 157, 264 |
| CviAII | CATG | 2 cut(s) | 16, 553 |
| CviQI | GTAC | 2 cut(s) | 157, 264 |
| DdeI | CTNAG | 2 cut(s) | 299, 349 |
| DpnI | GATC | 3 cut(s) | 243, 478, 512 |
| DpnII | GATC | 3 cut(s) | 241, 476, 510 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 209 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 209 |
| EaeI | YGGCCR | 1 cut(s) | 362 |
| EagI | CGGCCG | 1 cut(s) | 362 |
| EclXI | CGGCCG | 1 cut(s) | 362 |
| Eco147I | AGGCCT | 1 cut(s) | 407 |
| Eco24I | GRGCYC | 1 cut(s) | 258 |
| Eco32I | GATATC | 1 cut(s) | 228 |
| Eco52I | CGGCCG | 1 cut(s) | 362 |
| Eco57I | CTGAAG | 2 cut(s) | 44, 499 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 26 |
| EcoRII | CCWGG | 4 cut(s) | 174, 193, 237, 389 |
| EcoRV | GATATC | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 1 cut(s) | 258 |
| FaeI | CATG | 2 cut(s) | 19, 556 |
| FaiI | YATR | 3 cut(s) | 17, 184, 554 |
| FaqI | GGGAC | 3 cut(s) | 206, 211, 483 |
| FatI | CATG | 2 cut(s) | 15, 552 |
| Fnu4HI | GCNGC | 6 cut(s) | 98, 101, 104, 235, 362, 365 |
| FokI | GGATG | 1 cut(s) | 231 |
| FriOI | GRGCYC | 1 cut(s) | 258 |
| Fsp4HI | GCNGC | 6 cut(s) | 98, 101, 104, 235, 362, 365 |
| FspBI | CTAG | 2 cut(s) | 134, 442 |
| GlaI | GCGC | 1 cut(s) | 374 |
| GluI | GCNGC | 6 cut(s) | 98, 101, 104, 235, 362, 365 |
| GsuI | CTGGAG | 4 cut(s) | 79, 197, 280, 478 |
| HaeIII | GGCC | 5 cut(s) | 364, 394, 407, 520, 541 |
| HapII | CCGG | 2 cut(s) | 52, 543 |
| HhaI | GCGC | 1 cut(s) | 375 |
| Hin1II | CATG | 2 cut(s) | 19, 556 |
| Hin6I | GCGC | 1 cut(s) | 373 |
| HinP1I | GCGC | 1 cut(s) | 373 |
| HinfI | GANTC | 4 cut(s) | 168, 219, 333, 424 |
| HpaII | CCGG | 2 cut(s) | 52, 543 |
| HphI | GGTGA | 1 cut(s) | 51 |
| Hpy166II | GTNNAC | 1 cut(s) | 42 |
| Hpy188III | TCNNGA | 7 cut(s) | 22, 85, 134, 223, 259, 283, 433 |
| Hpy8I | GTNNAC | 1 cut(s) | 42 |
| Hpy99I | CGWCG | 2 cut(s) | 49, 284 |
| HpyAV | CCTTC | 2 cut(s) | 28, 140 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4IV | ACGT | 4 cut(s) | 44, 117, 155, 164 |
| HpyCH4V | TGCA | 1 cut(s) | 474 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 16, 25, 97, 103, 370, 385, 480, 538 |
| HpyF3I | CTNAG | 2 cut(s) | 299, 349 |
| HpySE526I | ACGT | 4 cut(s) | 44, 117, 155, 164 |
| Hsp92II | CATG | 2 cut(s) | 19, 556 |
| HspAI | GCGC | 1 cut(s) | 373 |
| Kzo9I | GATC | 3 cut(s) | 241, 476, 510 |
| LmnI | GCTCC | 3 cut(s) | 24, 78, 96 |
| Lsp1109I | GCAGC | 4 cut(s) | 84, 87, 90, 221 |
| MaeI | CTAG | 2 cut(s) | 134, 442 |
| MaeII | ACGT | 4 cut(s) | 44, 117, 155, 164 |
| MaeIII | GTNAC | 2 cut(s) | 165, 433 |
| MalI | GATC | 3 cut(s) | 243, 478, 512 |
| MbiI | CCGCTC | 1 cut(s) | 361 |
| MboI | GATC | 3 cut(s) | 241, 476, 510 |
| MboII | GAAGA | 2 cut(s) | 268, 505 |
| MfeI | CAATTG | 1 cut(s) | 523 |
| MflI | RGATCY | 1 cut(s) | 510 |
| MhlI | GDGCHC | 1 cut(s) | 258 |
| MluCI | AATT | 1 cut(s) | 523 |
| MlyI | GAGTC | 3 cut(s) | 162, 228, 418 |
| MnlI | CCTC | 6 cut(s) | 54, 92, 137, 182, 418, 438 |
| MroXI | GAANNNNTTC | 1 cut(s) | 307 |
| MspI | CCGG | 2 cut(s) | 52, 543 |
| MspR9I | CCNGG | 5 cut(s) | 176, 195, 239, 391, 543 |
| MunI | CAATTG | 1 cut(s) | 523 |
| MvaI | CCWGG | 4 cut(s) | 176, 195, 239, 391 |
| MvnI | CGCG | 3 cut(s) | 284, 367, 373 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 16, 25, 97, 103, 370, 385, 480, 538 |
| NciI | CCSGG | 1 cut(s) | 543 |
| NdeII | GATC | 3 cut(s) | 241, 476, 510 |
| NlaIII | CATG | 2 cut(s) | 19, 556 |
| NlaIV | GGNNCC | 1 cut(s) | 80 |
| NmuCI | GTSAC | 2 cut(s) | 165, 433 |
| NotI | GCGGCCGC | 1 cut(s) | 362 |
| NruI | TCGCGA | 1 cut(s) | 284 |
| PceI | AGGCCT | 1 cut(s) | 407 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 161, 285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 307 |
| PfeI | GAWTC | 1 cut(s) | 333 |
| PfoI | TCCNGGA | 1 cut(s) | 174 |
| PkrI | GCNGC | 6 cut(s) | 99, 102, 105, 236, 363, 366 |
| PleI | GAGTC | 3 cut(s) | 162, 227, 418 |
| PpsI | GAGTC | 3 cut(s) | 162, 227, 418 |
| Ppu21I | YACGTR | 1 cut(s) | 156 |
| PsiI | TTATAA | 1 cut(s) | 184 |
| Psp6I | CCWGG | 4 cut(s) | 174, 193, 237, 389 |
| PspGI | CCWGG | 4 cut(s) | 174, 193, 237, 389 |
| PspN4I | GGNNCC | 1 cut(s) | 80 |
| PspPI | GGNCC | 3 cut(s) | 393, 519, 540 |
| PsuI | RGATCY | 1 cut(s) | 510 |
| RruI | TCGCGA | 1 cut(s) | 284 |
| RsaI | GTAC | 2 cut(s) | 158, 265 |
| RsaNI | GTAC | 2 cut(s) | 157, 264 |
| SatI | GCNGC | 6 cut(s) | 98, 101, 104, 235, 362, 365 |
| Sau3AI | GATC | 3 cut(s) | 241, 476, 510 |
| Sau96I | GGNCC | 3 cut(s) | 393, 519, 540 |
| ScaI | AGTACT | 1 cut(s) | 265 |
| SchI | GAGTC | 3 cut(s) | 162, 228, 418 |
| ScrFI | CCNGG | 5 cut(s) | 176, 195, 239, 391, 543 |
| SduI | GDGCHC | 1 cut(s) | 258 |
| SetI | ASST | 8 cut(s) | 47, 65, 93, 120, 148, 153, 158, 167 |
| SfcI | CTRYAG | 1 cut(s) | 328 |
| SmlI | CTYRAG | 2 cut(s) | 267, 547 |
| SmoI | CTYRAG | 2 cut(s) | 267, 547 |
| Sse9I | AATT | 1 cut(s) | 523 |
| SseBI | AGGCCT | 1 cut(s) | 407 |
| SsiI | CCGC | 3 cut(s) | 361, 365, 371 |
| SspMI | CTAG | 2 cut(s) | 134, 442 |
| StuI | AGGCCT | 1 cut(s) | 407 |
| StyD4I | CCNGG | 5 cut(s) | 174, 193, 237, 389, 541 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaiI | ACGT | 4 cut(s) | 47, 120, 158, 167 |
| TaqI | TCGA | 1 cut(s) | 47 |
| TasI | AATT | 1 cut(s) | 523 |
| TatI | WGTACW | 1 cut(s) | 263 |
| TauI | GCSGC | 2 cut(s) | 364, 367 |
| TfiI | GAWTC | 1 cut(s) | 333 |
| TscAI | CASTG | 1 cut(s) | 303 |
| TseFI | GTSAC | 2 cut(s) | 165, 433 |
| TseI | GCWGC | 4 cut(s) | 97, 100, 103, 234 |
| Tsp45I | GTSAC | 2 cut(s) | 165, 433 |
| TspDTI | ATGAA | 2 cut(s) | 203, 300 |
| TspGWI | ACGGA | 2 cut(s) | 215, 237 |
| TspRI | CASTG | 1 cut(s) | 303 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 26 |
| XbaI | TCTAGA | 1 cut(s) | 133 |
| XmnI | GAANNNNTTC | 1 cut(s) | 307 |
| XspI | CTAG | 2 cut(s) | 134, 442 |
| ZrmI | AGTACT | 1 cut(s) | 265 |