gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 708, 915 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1332 |
| AccBSI | CCGCTC | 1 cut(s) | 1285 |
| AccII | CGCG | 7 cut(s) | 586, 766, 1064, 1193, 1279, 1346, 1393 |
| AciI | CCGC | 7 cut(s) | 331, 459, 559, 572, 1277, 1283, 1344 |
| AclWI | GGATC | 4 cut(s) | 724, 1009, 1022, 1137 |
| AcoI | YGGCCR | 1 cut(s) | 1274 |
| AcuI | CTGAAG | 5 cut(s) | 53, 563, 674, 1229, 1411 |
| AfaI | GTAC | 2 cut(s) | 929, 1184 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 191, 397, 398, 611, 711, 717, 883, 1332, 1419 |
| AflII | CTTAAG | 1 cut(s) | 646 |
| AgsI | TTSAA | 7 cut(s) | 133, 285, 757, 799, 934, 1043, 1072 |
| AjnI | CCWGG | 4 cut(s) | 298, 710, 1124, 1146 |
| AluBI | AGCT | 7 cut(s) | 115, 175, 547, 841, 1102, 1213, 1383 |
| AluI | AGCT | 7 cut(s) | 115, 175, 547, 841, 1102, 1213, 1383 |
| Alw26I | GTCTC | 2 cut(s) | 441, 447 |
| AlwI | GGATC | 4 cut(s) | 724, 1009, 1022, 1137 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 841, 979, 1320 |
| Ama87I | CYCGRG | 1 cut(s) | 745 |
| AoxI | GGCC | 9 cut(s) | 325, 374, 568, 1110, 1128, 1274, 1316, 1364, 1430 |
| ApaI | GGGCCC | 1 cut(s) | 1132 |
| ApeKI | GCWGC | 4 cut(s) | 115, 172, 561, 841 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1112 |
| AspLEI | GCGC | 4 cut(s) | 305, 588, 666, 1155 |
| AsuC2I | CCSGG | 1 cut(s) | 596 |
| AsuHPI | GGTGA | 4 cut(s) | 307, 782, 941, 1369 |
| AvaI | CYCGRG | 1 cut(s) | 745 |
| AvaII | GGWCC | 5 cut(s) | 182, 401, 1245, 1409, 1422 |
| AxyI | CCTNAGG | 1 cut(s) | 1177 |
| BaeGI | GKGCMC | 1 cut(s) | 1132 |
| BamHI | GGATCC | 1 cut(s) | 1014 |
| BanII | GRGCYC | 2 cut(s) | 105, 1132 |
| BauI | CACGAG | 1 cut(s) | 784 |
| BbsI | GAAGAC | 2 cut(s) | 19, 1276 |
| BbvCI | CCTCAGC | 1 cut(s) | 548 |
| BbvI | GCAGC | 4 cut(s) | 102, 184, 548, 828 |
| BccI | CCATC | 7 cut(s) | 391, 490, 715, 874, 1326, 1334, 1409 |
| BceAI | ACGGC | 1 cut(s) | 1289 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 511, 545 |
| BciT130I | CCWGG | 4 cut(s) | 300, 712, 1126, 1148 |
| BciVI | GTATCC | 1 cut(s) | 512 |
| BclI | TGATCA | 4 cut(s) | 47, 417, 897, 1359 |
| BcnI | CCSGG | 1 cut(s) | 596 |
| BcoDI | GTCTC | 2 cut(s) | 441, 447 |
| BfaI | CTAG | 6 cut(s) | 176, 323, 1048, 1085, 1103, 1292 |
| BfmI | CTRYAG | 3 cut(s) | 496, 671, 1240 |
| BfoI | RGCGCY | 1 cut(s) | 667 |
| BfrI | CTTAAG | 1 cut(s) | 646 |
| BfuAI | ACCTGC | 2 cut(s) | 708, 915 |
| BfuI | GTATCC | 1 cut(s) | 512 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1127 |
| BglII | AGATCT | 2 cut(s) | 360, 492 |
| BisI | GCNGC | 6 cut(s) | 116, 173, 559, 562, 842, 1277 |
| BlpI | GCTNAGC | 1 cut(s) | 872 |
| BlsI | GCNGC | 6 cut(s) | 117, 174, 560, 563, 843, 1278 |
| BmcAI | AGTACT | 1 cut(s) | 929 |
| Bme1390I | CCNGG | 5 cut(s) | 300, 596, 712, 1126, 1148 |
| Bme18I | GGWCC | 5 cut(s) | 182, 401, 1245, 1409, 1422 |
| BmeT110I | CYCGRG | 1 cut(s) | 745 |
| BmiI | GGNNCC | 9 cut(s) | 183, 402, 692, 989, 1016, 1130, 1131, 1200, 1411 |
| BmrFI | CCNGG | 5 cut(s) | 300, 596, 712, 1126, 1148 |
| BmsI | GCATC | 1 cut(s) | 501 |
| BpiI | GAAGAC | 2 cut(s) | 19, 1276 |
| BpmI | CTGGAG | 2 cut(s) | 471, 733 |
| Bpu10I | CCTNAGC | 2 cut(s) | 548, 1286 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 872 |
| BpuEI | CTTGAG | 2 cut(s) | 73, 1015 |
| BpuMI | CCSGG | 1 cut(s) | 596 |
| BsaBI | GATNNNNATC | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 6 cut(s) | 167, 212, 594, 845, 1125, 1146 |
| BsaWI | WCCGGW | 1 cut(s) | 1406 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 280, 310, 312, 342, 1232, 1262 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 191, 397, 398, 611, 711, 717, 883, 1332, 1419 |
| Bse1I | ACTGG | 1 cut(s) | 961 |
| Bse21I | CCTNAGG | 1 cut(s) | 1177 |
| Bse8I | GATNNNNATC | 1 cut(s) | 416 |
| BseBI | CCWGG | 4 cut(s) | 300, 712, 1126, 1148 |
| BseDI | CCNNGG | 6 cut(s) | 167, 212, 594, 845, 1125, 1146 |
| BseGI | GGATG | 4 cut(s) | 468, 707, 885, 1101 |
| BseJI | GATNNNNATC | 1 cut(s) | 416 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 191, 397, 398, 611, 711, 717, 883, 1332, 1419 |
| BseMII | CTCAG | 5 cut(s) | 539, 863, 1168, 1228, 1300 |
| BseNI | ACTGG | 1 cut(s) | 961 |
| BseSI | GKGCMC | 1 cut(s) | 1132 |
| BseX3I | CGGCCG | 1 cut(s) | 1274 |
| BseXI | GCAGC | 4 cut(s) | 102, 184, 548, 828 |
| Bsh1236I | CGCG | 7 cut(s) | 586, 766, 1064, 1193, 1279, 1346, 1393 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1277, 1283 |
| BshFI | GGCC | 9 cut(s) | 327, 376, 570, 1112, 1130, 1276, 1318, 1366, 1432 |
| BsiEI | CGRYCG | 2 cut(s) | 1277, 1283 |
| BsiHKCI | CYCGRG | 1 cut(s) | 745 |
| BsiSI | CCGG | 3 cut(s) | 596, 877, 1407 |
| BslFI | GGGAC | 4 cut(s) | 195, 414, 1063, 1395 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 191, 397, 398, 611, 711, 717, 883, 1332, 1419 |
| BsmAI | GTCTC | 2 cut(s) | 441, 447 |
| BsmFI | GGGAC | 4 cut(s) | 195, 414, 1063, 1395 |
| BsmI | GAATGC | 1 cut(s) | 264 |
| BsnI | GGCC | 9 cut(s) | 327, 376, 570, 1112, 1130, 1276, 1318, 1366, 1432 |
| BsoBI | CYCGRG | 1 cut(s) | 745 |
| Bsp120I | GGGCCC | 1 cut(s) | 1128 |
| Bsp1286I | GDGCHC | 2 cut(s) | 105, 1132 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 872 |
| Bsp19I | CCATGG | 1 cut(s) | 167 |
| Bsp68I | TCGCGA | 2 cut(s) | 1193, 1393 |
| BspACI | CCGC | 7 cut(s) | 331, 459, 559, 572, 1277, 1283, 1344 |
| BspANI | GGCC | 9 cut(s) | 327, 376, 570, 1112, 1130, 1276, 1318, 1366, 1432 |
| BspCNI | CTCAG | 5 cut(s) | 540, 864, 1169, 1227, 1299 |
| BspFNI | CGCG | 7 cut(s) | 586, 766, 1064, 1193, 1279, 1346, 1393 |
| BspHI | TCATGA | 1 cut(s) | 954 |
| BspLI | GGNNCC | 9 cut(s) | 183, 402, 692, 989, 1016, 1130, 1131, 1200, 1411 |
| BspMAI | CTGCAG | 1 cut(s) | 500 |
| BspMI | ACCTGC | 2 cut(s) | 708, 915 |
| BspPI | GGATC | 4 cut(s) | 724, 1009, 1022, 1137 |
| BspTI | CTTAAG | 1 cut(s) | 646 |
| BsrBI | CCGCTC | 1 cut(s) | 1285 |
| BsrI | ACTGG | 1 cut(s) | 961 |
| BssECI | CCNNGG | 6 cut(s) | 167, 212, 594, 845, 1125, 1146 |
| BssSI | CACGAG | 1 cut(s) | 784 |
| BssT1I | CCWWGG | 2 cut(s) | 167, 845 |
| Bst2BI | CACGAG | 1 cut(s) | 784 |
| Bst2UI | CCWGG | 4 cut(s) | 300, 712, 1126, 1148 |
| Bst4CI | ACNGT | 4 cut(s) | 57, 110, 140, 837 |
| Bst6I | CTCTTC | 1 cut(s) | 478 |
| BstAFI | CTTAAG | 1 cut(s) | 646 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 723 |
| BstC8I | GCNNGC | 6 cut(s) | 335, 346, 530, 572, 1062, 1391 |
| BstDEI | CTNAG | 5 cut(s) | 548, 872, 1177, 1214, 1286 |
| BstDSI | CCRYGG | 1 cut(s) | 167 |
| BstEII | GGTNACC | 1 cut(s) | 313 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 715 |
| BstF5I | GGATG | 4 cut(s) | 468, 707, 885, 1101 |
| BstFNI | CGCG | 7 cut(s) | 586, 766, 1064, 1193, 1279, 1346, 1393 |
| BstH2I | RGCGCY | 1 cut(s) | 667 |
| BstHHI | GCGC | 4 cut(s) | 305, 588, 666, 1155 |
| BstMAI | GTCTC | 2 cut(s) | 441, 447 |
| BstMCI | CGRYCG | 2 cut(s) | 1277, 1283 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 172, 567, 723, 916, 1006, 1118, 1127, 1282 |
| BstNI | CCWGG | 4 cut(s) | 300, 712, 1126, 1148 |
| BstNSI | RCATGY | 1 cut(s) | 348 |
| BstPI | GGTNACC | 1 cut(s) | 313 |
| BstSCI | CCNGG | 5 cut(s) | 298, 594, 710, 1124, 1146 |
| BstSFI | CTRYAG | 3 cut(s) | 496, 671, 1240 |
| BstSLI | GKGCMC | 1 cut(s) | 1132 |
| BstUI | CGCG | 7 cut(s) | 586, 766, 1064, 1193, 1279, 1346, 1393 |
| BstV1I | GCAGC | 4 cut(s) | 102, 184, 548, 828 |
| BstV2I | GAAGAC | 2 cut(s) | 19, 1276 |
| BstX2I | RGATCY | 3 cut(s) | 360, 492, 1014 |
| BstYI | RGATCY | 3 cut(s) | 360, 492, 1014 |
| BstZI | CGGCCG | 1 cut(s) | 1274 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1177 |
| BsuI | GTATCC | 1 cut(s) | 512 |
| BsuRI | GGCC | 9 cut(s) | 327, 376, 570, 1112, 1130, 1276, 1318, 1366, 1432 |
| BtgI | CCRYGG | 1 cut(s) | 167 |
| BtsCI | GGATG | 4 cut(s) | 468, 707, 885, 1101 |
| BtsIMutI | CAGTG | 2 cut(s) | 968, 1205 |
| BtuMI | TCGCGA | 2 cut(s) | 1193, 1393 |
| BveI | ACCTGC | 2 cut(s) | 708, 915 |
| Cac8I | GCNNGC | 6 cut(s) | 335, 346, 530, 572, 1062, 1391 |
| CaiI | CAGNNNCTG | 3 cut(s) | 841, 979, 1320 |
| CciI | TCATGA | 1 cut(s) | 954 |
| CfoI | GCGC | 4 cut(s) | 305, 588, 666, 1155 |
| CseI | GACGC | 1 cut(s) | 1395 |
| Csp6I | GTAC | 2 cut(s) | 928, 1183 |
| CviAII | CATG | 6 cut(s) | 45, 168, 345, 723, 916, 955 |
| CviQI | GTAC | 2 cut(s) | 928, 1183 |
| DdeI | CTNAG | 5 cut(s) | 548, 872, 1177, 1214, 1286 |
| EaeI | YGGCCR | 1 cut(s) | 1274 |
| EagI | CGGCCG | 1 cut(s) | 1274 |
| Eam1104I | CTCTTC | 1 cut(s) | 478 |
| EarI | CTCTTC | 1 cut(s) | 478 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| EclXI | CGGCCG | 1 cut(s) | 1274 |
| Eco130I | CCWWGG | 2 cut(s) | 167, 845 |
| Eco147I | AGGCCT | 2 cut(s) | 327, 1112 |
| Eco24I | GRGCYC | 2 cut(s) | 105, 1132 |
| Eco32I | GATATC | 1 cut(s) | 1137 |
| Eco47I | GGWCC | 5 cut(s) | 182, 401, 1245, 1409, 1422 |
| Eco52I | CGGCCG | 1 cut(s) | 1274 |
| Eco57I | CTGAAG | 5 cut(s) | 53, 563, 674, 1229, 1411 |
| Eco81I | CCTNAGG | 1 cut(s) | 1177 |
| Eco88I | CYCGRG | 1 cut(s) | 745 |
| Eco91I | GGTNACC | 1 cut(s) | 313 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 715 |
| EcoO109I | RGGNCCY | 5 cut(s) | 401, 1129, 1245, 1317, 1422 |
| EcoO65I | GGTNACC | 1 cut(s) | 313 |
| EcoRII | CCWGG | 4 cut(s) | 298, 710, 1124, 1146 |
| EcoRV | GATATC | 1 cut(s) | 1137 |
| EcoT14I | CCWWGG | 2 cut(s) | 167, 845 |
| EcoT38I | GRGCYC | 2 cut(s) | 105, 1132 |
| ErhI | CCWWGG | 2 cut(s) | 167, 845 |
| FaeI | CATG | 6 cut(s) | 48, 171, 348, 726, 919, 958 |
| FaqI | GGGAC | 4 cut(s) | 195, 414, 1063, 1395 |
| FatI | CATG | 6 cut(s) | 44, 167, 344, 722, 915, 954 |
| FauI | CCCGC | 3 cut(s) | 452, 579, 1351 |
| FbaI | TGATCA | 4 cut(s) | 47, 417, 897, 1359 |
| Fnu4HI | GCNGC | 6 cut(s) | 116, 173, 559, 562, 842, 1277 |
| FokI | GGATG | 4 cut(s) | 475, 694, 892, 1108 |
| FriOI | GRGCYC | 2 cut(s) | 105, 1132 |
| Fsp4HI | GCNGC | 6 cut(s) | 116, 173, 559, 562, 842, 1277 |
| FspBI | CTAG | 6 cut(s) | 176, 323, 1048, 1085, 1103, 1292 |
| GlaI | GCGC | 4 cut(s) | 304, 587, 665, 1154 |
| GluI | GCNGC | 6 cut(s) | 116, 173, 559, 562, 842, 1277 |
| GsuI | CTGGAG | 2 cut(s) | 471, 733 |
| HaeII | RGCGCY | 1 cut(s) | 667 |
| HaeIII | GGCC | 9 cut(s) | 327, 376, 570, 1112, 1130, 1276, 1318, 1366, 1432 |
| HapII | CCGG | 3 cut(s) | 596, 877, 1407 |
| HgaI | GACGC | 1 cut(s) | 1395 |
| HhaI | GCGC | 4 cut(s) | 305, 588, 666, 1155 |
| Hin1II | CATG | 6 cut(s) | 48, 171, 348, 726, 919, 958 |
| Hin6I | GCGC | 4 cut(s) | 303, 586, 664, 1153 |
| HinP1I | GCGC | 4 cut(s) | 303, 586, 664, 1153 |
| HincII | GTYRAC | 1 cut(s) | 444 |
| HindII | GTYRAC | 1 cut(s) | 444 |
| HinfI | GANTC | 5 cut(s) | 787, 946, 1163, 1348, 1416 |
| HpaII | CCGG | 3 cut(s) | 596, 877, 1407 |
| HphI | GGTGA | 4 cut(s) | 307, 782, 941, 1369 |
| Hpy166II | GTNNAC | 1 cut(s) | 444 |
| Hpy188I | TCNGA | 4 cut(s) | 216, 408, 902, 1331 |
| Hpy8I | GTNNAC | 1 cut(s) | 444 |
| Hpy99I | CGWCG | 1 cut(s) | 1121 |
| HpyAV | CCTTC | 3 cut(s) | 1102, 1123, 1435 |
| HpyCH4III | ACNGT | 4 cut(s) | 57, 110, 140, 837 |
| HpyCH4V | TGCA | 1 cut(s) | 498 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 172, 567, 723, 916, 1006, 1118, 1127, 1282 |
| HpyF3I | CTNAG | 5 cut(s) | 548, 872, 1177, 1214, 1286 |
| Hsp92II | CATG | 6 cut(s) | 48, 171, 348, 726, 919, 958 |
| HspAI | GCGC | 4 cut(s) | 303, 586, 664, 1153 |
| Ksp22I | TGATCA | 4 cut(s) | 47, 417, 897, 1359 |
| LmnI | GCTCC | 5 cut(s) | 393, 714, 987, 1198, 1380 |
| Lsp1109I | GCAGC | 4 cut(s) | 102, 184, 548, 828 |
| LweI | GCATC | 1 cut(s) | 501 |
| MaeI | CTAG | 6 cut(s) | 176, 323, 1048, 1085, 1103, 1292 |
| MaeIII | GTNAC | 6 cut(s) | 12, 229, 313, 788, 831, 981 |
| MbiI | CCGCTC | 1 cut(s) | 1285 |
| MflI | RGATCY | 3 cut(s) | 360, 492, 1014 |
| MhlI | GDGCHC | 2 cut(s) | 105, 1132 |
| MluCI | AATT | 2 cut(s) | 308, 893 |
| MlyI | GAGTC | 3 cut(s) | 796, 1172, 1342 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1112 |
| MseI | TTAA | 2 cut(s) | 647, 1262 |
| MspA1I | CMGCKG | 2 cut(s) | 459, 561 |
| MspCI | CTTAAG | 1 cut(s) | 646 |
| MspI | CCGG | 3 cut(s) | 596, 877, 1407 |
| MspR9I | CCNGG | 5 cut(s) | 300, 596, 712, 1126, 1148 |
| Mva1269I | GAATGC | 1 cut(s) | 264 |
| MvaI | CCWGG | 4 cut(s) | 300, 712, 1126, 1148 |
| MvnI | CGCG | 7 cut(s) | 586, 766, 1064, 1193, 1279, 1346, 1393 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 172, 567, 723, 916, 1006, 1118, 1127, 1282 |
| NciI | CCSGG | 1 cut(s) | 596 |
| NcoI | CCATGG | 1 cut(s) | 167 |
| NlaIII | CATG | 6 cut(s) | 48, 171, 348, 726, 919, 958 |
| NlaIV | GGNNCC | 9 cut(s) | 183, 402, 692, 989, 1016, 1130, 1131, 1200, 1411 |
| NmuCI | GTSAC | 6 cut(s) | 12, 229, 313, 788, 831, 981 |
| NruI | TCGCGA | 2 cut(s) | 1193, 1393 |
| NspI | RCATGY | 1 cut(s) | 348 |
| PaeI | GCATGC | 1 cut(s) | 348 |
| PaeR7I | CTCGAG | 1 cut(s) | 745 |
| PagI | TCATGA | 1 cut(s) | 954 |
| PceI | AGGCCT | 2 cut(s) | 327, 1112 |
| PctI | GAATGC | 1 cut(s) | 264 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1112 |
| PfeI | GAWTC | 2 cut(s) | 946, 1416 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1332 |
| PfoI | TCCNGGA | 1 cut(s) | 710 |
| PkrI | GCNGC | 6 cut(s) | 117, 174, 560, 563, 843, 1278 |
| PleI | GAGTC | 3 cut(s) | 795, 1171, 1342 |
| PpsI | GAGTC | 3 cut(s) | 795, 1171, 1342 |
| PpuMI | RGGWCCY | 3 cut(s) | 401, 1245, 1422 |
| Psp5II | RGGWCCY | 3 cut(s) | 401, 1245, 1422 |
| Psp6I | CCWGG | 4 cut(s) | 298, 710, 1124, 1146 |
| PspEI | GGTNACC | 1 cut(s) | 313 |
| PspGI | CCWGG | 4 cut(s) | 298, 710, 1124, 1146 |
| PspN4I | GGNNCC | 9 cut(s) | 183, 402, 692, 989, 1016, 1130, 1131, 1200, 1411 |
| PspOMI | GGGCCC | 1 cut(s) | 1128 |
| PspPPI | RGGWCCY | 3 cut(s) | 401, 1245, 1422 |
| PstI | CTGCAG | 1 cut(s) | 500 |
| PstNI | CAGNNNCTG | 3 cut(s) | 841, 979, 1320 |
| PsuI | RGATCY | 3 cut(s) | 360, 492, 1014 |
| RruI | TCGCGA | 2 cut(s) | 1193, 1393 |
| RsaI | GTAC | 2 cut(s) | 929, 1184 |
| RsaNI | GTAC | 2 cut(s) | 928, 1183 |
| SaqAI | TTAA | 2 cut(s) | 647, 1262 |
| SatI | GCNGC | 6 cut(s) | 116, 173, 559, 562, 842, 1277 |
| ScaI | AGTACT | 1 cut(s) | 929 |
| SchI | GAGTC | 3 cut(s) | 796, 1172, 1342 |
| ScrFI | CCNGG | 5 cut(s) | 300, 596, 712, 1126, 1148 |
| SduI | GDGCHC | 2 cut(s) | 105, 1132 |
| SfaNI | GCATC | 1 cut(s) | 501 |
| SfcI | CTRYAG | 3 cut(s) | 496, 671, 1240 |
| Sfr274I | CTCGAG | 1 cut(s) | 745 |
| SinI | GGWCC | 5 cut(s) | 182, 401, 1245, 1409, 1422 |
| SlaI | CTCGAG | 1 cut(s) | 745 |
| SmlI | CTYRAG | 4 cut(s) | 88, 646, 745, 994 |
| SmoI | CTYRAG | 4 cut(s) | 88, 646, 745, 994 |
| SphI | GCATGC | 1 cut(s) | 348 |
| Sse9I | AATT | 2 cut(s) | 308, 893 |
| SseBI | AGGCCT | 2 cut(s) | 327, 1112 |
| SsiI | CCGC | 7 cut(s) | 331, 459, 559, 572, 1277, 1283, 1344 |
| SspMI | CTAG | 6 cut(s) | 176, 323, 1048, 1085, 1103, 1292 |
| StuI | AGGCCT | 2 cut(s) | 327, 1112 |
| StyD4I | CCNGG | 5 cut(s) | 298, 594, 710, 1124, 1146 |
| StyI | CCWWGG | 2 cut(s) | 167, 845 |
| TaaI | ACNGT | 4 cut(s) | 57, 110, 140, 837 |
| TaqI | TCGA | 4 cut(s) | 63, 635, 746, 807 |
| TaqII | GACCGA | 1 cut(s) | 182 |
| TasI | AATT | 2 cut(s) | 308, 893 |
| TatI | WGTACW | 1 cut(s) | 927 |
| TauI | GCSGC | 2 cut(s) | 561, 1279 |
| TfiI | GAWTC | 2 cut(s) | 946, 1416 |
| Tru1I | TTAA | 2 cut(s) | 647, 1262 |
| Tru9I | TTAA | 2 cut(s) | 647, 1262 |
| TscAI | CASTG | 2 cut(s) | 968, 1212 |
| TseFI | GTSAC | 6 cut(s) | 12, 229, 313, 788, 831, 981 |
| TseI | GCWGC | 4 cut(s) | 115, 172, 561, 841 |
| Tsp45I | GTSAC | 6 cut(s) | 12, 229, 313, 788, 831, 981 |
| TspDTI | ATGAA | 3 cut(s) | 482, 971, 1112 |
| TspGWI | ACGGA | 1 cut(s) | 1000 |
| TspRI | CASTG | 2 cut(s) | 968, 1212 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1332 |
| Vha464I | CTTAAG | 1 cut(s) | 646 |
| VpaK11BI | GGWCC | 5 cut(s) | 182, 401, 1245, 1409, 1422 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 715 |
| XceI | RCATGY | 1 cut(s) | 348 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1164 |
| XhoI | CTCGAG | 1 cut(s) | 745 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1112 |
| XspI | CTAG | 6 cut(s) | 176, 323, 1048, 1085, 1103, 1292 |
| ZrmI | AGTACT | 1 cut(s) | 929 |