Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1545 |
| AatII | GACGTC | 1 cut(s) | 1098 |
| Acc36I | ACCTGC | 1 cut(s) | 470 |
| Acc65I | GGTACC | 1 cut(s) | 1912 |
| AccB1I | GGYRCC | 2 cut(s) | 368, 1912 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 985, 1340 |
| AccBSI | CCGCTC | 1 cut(s) | 541 |
| AccII | CGCG | 6 cut(s) | 20, 263, 448, 454, 522, 2127 |
| AccIII | TCCGGA | 1 cut(s) | 1559 |
| AclWI | GGATC | 3 cut(s) | 913, 1796, 1919 |
| AcoI | YGGCCR | 6 cut(s) | 89, 282, 304, 401, 892, 1375 |
| AcsI | RAATTY | 3 cut(s) | 69, 2129, 2224 |
| AcuI | CTGAAG | 2 cut(s) | 1131, 1434 |
| AcyI | GRCGYC | 2 cut(s) | 369, 1095 |
| AfaI | GTAC | 3 cut(s) | 859, 1914, 2042 |
| AgsI | TTSAA | 9 cut(s) | 1204, 1229, 1307, 1421, 1746, 1961, 2135, 2168, 2210 |
| AjnI | CCWGG | 3 cut(s) | 431, 801, 1876 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 915, 947, 1884, 1916 |
| AluBI | AGCT | 8 cut(s) | 363, 464, 1310, 1316, 1713, 1979, 2231, 2267 |
| AluI | AGCT | 8 cut(s) | 363, 464, 1310, 1316, 1713, 1979, 2231, 2267 |
| Alw21I | GWGCWC | 1 cut(s) | 777 |
| Alw26I | GTCTC | 4 cut(s) | 129, 419, 1147, 2223 |
| AlwI | GGATC | 3 cut(s) | 913, 1796, 1919 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 363 |
| Ama87I | CYCGRG | 3 cut(s) | 908, 1028, 1083 |
| Aor13HI | TCCGGA | 1 cut(s) | 1559 |
| ApoI | RAATTY | 3 cut(s) | 69, 2129, 2224 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 578, 610, 1163, 1195 |
| AseI | ATTAAT | 1 cut(s) | 8 |
| Asp718I | GGTACC | 1 cut(s) | 1912 |
| AspLEI | GCGC | 6 cut(s) | 265, 371, 454, 1333, 1482, 1675 |
| AsuHPI | GGTGA | 4 cut(s) | 604, 1604, 1966, 2164 |
| AvaI | CYCGRG | 3 cut(s) | 908, 1028, 1083 |
| AvaII | GGWCC | 4 cut(s) | 976, 1492, 1554, 1880 |
| AxyI | CCTNAGG | 1 cut(s) | 1758 |
| BaeGI | GKGCMC | 1 cut(s) | 1626 |
| BalI | TGGCCA | 1 cut(s) | 1377 |
| BanI | GGYRCC | 2 cut(s) | 368, 1912 |
| BanII | GRGCYC | 7 cut(s) | 663, 909, 1084, 1162, 1300, 1877, 2181 |
| BauI | CACGAG | 2 cut(s) | 1293, 2238 |
| BbsI | GAAGAC | 1 cut(s) | 399 |
| Bbv12I | GWGCWC | 1 cut(s) | 777 |
| BbvCI | CCTCAGC | 1 cut(s) | 1887 |
| BceAI | ACGGC | 6 cut(s) | 104, 319, 388, 907, 1382, 2172 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 218, 252, 1163, 1197 |
| BciT130I | CCWGG | 3 cut(s) | 433, 803, 1878 |
| BciVI | GTATCC | 1 cut(s) | 1112 |
| BcoDI | GTCTC | 4 cut(s) | 129, 419, 1147, 2223 |
| BfaI | CTAG | 3 cut(s) | 348, 461, 2280 |
| BfmI | CTRYAG | 1 cut(s) | 1866 |
| BfoI | RGCGCY | 1 cut(s) | 372 |
| BfuAI | ACCTGC | 1 cut(s) | 470 |
| BfuI | GTATCC | 1 cut(s) | 1112 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1613 |
| BglII | AGATCT | 1 cut(s) | 457 |
| Bme1390I | CCNGG | 3 cut(s) | 433, 803, 1878 |
| Bme18I | GGWCC | 4 cut(s) | 976, 1492, 1554, 1880 |
| BmeT110I | CYCGRG | 3 cut(s) | 908, 1028, 1083 |
| BmrFI | CCNGG | 3 cut(s) | 433, 803, 1878 |
| BmrI | ACTGGG | 1 cut(s) | 1087 |
| BmsI | GCATC | 6 cut(s) | 262, 277, 1660, 1760, 2071, 2266 |
| BmuI | ACTGGG | 1 cut(s) | 1087 |
| BpiI | GAAGAC | 1 cut(s) | 399 |
| BpmI | CTGGAG | 2 cut(s) | 104, 824 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1887, 2232 |
| BpuEI | CTTGAG | 3 cut(s) | 1296, 1809, 2114 |
| Bsa29I | ATCGAT | 3 cut(s) | 207, 498, 651 |
| BsaHI | GRCGYC | 2 cut(s) | 369, 1095 |
| BsaI | GGTCTC | 2 cut(s) | 419, 1147 |
| BsaJI | CCNNGG | 6 cut(s) | 705, 1248, 1508, 1626, 1876, 2148 |
| BsaWI | WCCGGW | 3 cut(s) | 1559, 1634, 1690 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1983, 2013 |
| Bse118I | RCCGGY | 4 cut(s) | 785, 970, 1288, 1551 |
| Bse21I | CCTNAGG | 1 cut(s) | 1758 |
| Bse3DI | GCAATG | 1 cut(s) | 2220 |
| BseAI | TCCGGA | 1 cut(s) | 1559 |
| BseBI | CCWGG | 3 cut(s) | 433, 803, 1878 |
| BseCI | ATCGAT | 3 cut(s) | 207, 498, 651 |
| BseDI | CCNNGG | 6 cut(s) | 705, 1248, 1508, 1626, 1876, 2148 |
| BseGI | GGATG | 2 cut(s) | 1525, 2299 |
| BseMI | GCAATG | 1 cut(s) | 2220 |
| BseMII | CTCAG | 3 cut(s) | 1749, 1878, 2246 |
| BseRI | GAGGAG | 2 cut(s) | 1014, 1421 |
| BseSI | GKGCMC | 1 cut(s) | 1626 |
| BseX3I | CGGCCG | 3 cut(s) | 89, 304, 892 |
| BseYI | CCCAGC | 4 cut(s) | 363, 1155, 1266, 1568 |
| BsgI | GTGCAG | 4 cut(s) | 817, 1715, 1758, 1818 |
| Bsh1236I | CGCG | 6 cut(s) | 20, 263, 448, 454, 522, 2127 |
| Bsh1285I | CGRYCG | 4 cut(s) | 92, 307, 786, 895 |
| BshNI | GGYRCC | 2 cut(s) | 368, 1912 |
| BshVI | ATCGAT | 3 cut(s) | 207, 498, 651 |
| BsiEI | CGRYCG | 4 cut(s) | 92, 307, 786, 895 |
| BsiHKAI | GWGCWC | 1 cut(s) | 777 |
| BsiHKCI | CYCGRG | 3 cut(s) | 908, 1028, 1083 |
| BslFI | GGGAC | 2 cut(s) | 1120, 1612 |
| BsmAI | GTCTC | 4 cut(s) | 129, 419, 1147, 2223 |
| BsmFI | GGGAC | 2 cut(s) | 1120, 1612 |
| Bso31I | GGTCTC | 2 cut(s) | 419, 1147 |
| BsoBI | CYCGRG | 3 cut(s) | 908, 1028, 1083 |
| Bsp1286I | GDGCHC | 9 cut(s) | 663, 777, 909, 1084, 1162, 1300, 1626, 1877, 2181 |
| Bsp13I | TCCGGA | 1 cut(s) | 1559 |
| Bsp143I | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| Bsp19I | CCATGG | 2 cut(s) | 705, 1508 |
| Bsp68I | TCGCGA | 1 cut(s) | 2127 |
| BspCNI | CTCAG | 3 cut(s) | 1750, 1879, 2245 |
| BspDI | ATCGAT | 3 cut(s) | 207, 498, 651 |
| BspEI | TCCGGA | 1 cut(s) | 1559 |
| BspFNI | CGCG | 6 cut(s) | 20, 263, 448, 454, 522, 2127 |
| BspMI | ACCTGC | 1 cut(s) | 470 |
| BspPI | GGATC | 3 cut(s) | 913, 1796, 1919 |
| BspQI | GCTCTTC | 1 cut(s) | 2169 |
| BspT107I | GGYRCC | 2 cut(s) | 368, 1912 |
| BspTNI | GGTCTC | 2 cut(s) | 419, 1147 |
| BsrBI | CCGCTC | 1 cut(s) | 541 |
| BsrDI | GCAATG | 1 cut(s) | 2220 |
| BsrFI | RCCGGY | 4 cut(s) | 785, 970, 1288, 1551 |
| BssAI | RCCGGY | 4 cut(s) | 785, 970, 1288, 1551 |
| BssECI | CCNNGG | 6 cut(s) | 705, 1248, 1508, 1626, 1876, 2148 |
| BssMI | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| BssNI | GRCGYC | 2 cut(s) | 369, 1095 |
| BssSI | CACGAG | 2 cut(s) | 1293, 2238 |
| BssT1I | CCWWGG | 2 cut(s) | 705, 1508 |
| Bst2BI | CACGAG | 2 cut(s) | 1293, 2238 |
| Bst2UI | CCWGG | 3 cut(s) | 433, 803, 1878 |
| Bst4CI | ACNGT | 4 cut(s) | 734, 767, 1456, 2152 |
| Bst6I | CTCTTC | 7 cut(s) | 213, 844, 1131, 1308, 1509, 1722, 2169 |
| BstACI | GRCGYC | 2 cut(s) | 369, 1095 |
| BstDEI | CTNAG | 4 cut(s) | 1723, 1758, 1887, 2232 |
| BstDSI | CCRYGG | 4 cut(s) | 705, 1508, 1626, 2148 |
| BstF5I | GGATG | 2 cut(s) | 1525, 2299 |
| BstFNI | CGCG | 6 cut(s) | 20, 263, 448, 454, 522, 2127 |
| BstH2I | RGCGCY | 1 cut(s) | 372 |
| BstHHI | GCGC | 6 cut(s) | 265, 371, 454, 1333, 1482, 1675 |
| BstKTI | GATC | 9 cut(s) | 211, 460, 502, 921, 1069, 1404, 1537, 1804, 1927 |
| BstMAI | GTCTC | 4 cut(s) | 129, 419, 1147, 2223 |
| BstMBI | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| BstMCI | CGRYCG | 4 cut(s) | 92, 307, 786, 895 |
| BstNI | CCWGG | 3 cut(s) | 433, 803, 1878 |
| BstNSI | RCATGY | 1 cut(s) | 1568 |
| BstSCI | CCNGG | 3 cut(s) | 431, 801, 1876 |
| BstSFI | CTRYAG | 1 cut(s) | 1866 |
| BstSLI | GKGCMC | 1 cut(s) | 1626 |
| BstUI | CGCG | 6 cut(s) | 20, 263, 448, 454, 522, 2127 |
| BstV2I | GAAGAC | 1 cut(s) | 399 |
| BstX2I | RGATCY | 1 cut(s) | 457 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1982 |
| BstYI | RGATCY | 1 cut(s) | 457 |
| BstZI | CGGCCG | 3 cut(s) | 89, 304, 892 |
| Bsu15I | ATCGAT | 3 cut(s) | 207, 498, 651 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1758 |
| BsuI | GTATCC | 1 cut(s) | 1112 |
| BsuTUI | ATCGAT | 3 cut(s) | 207, 498, 651 |
| BtgI | CCRYGG | 4 cut(s) | 705, 1508, 1626, 2148 |
| BtgZI | GCGATG | 4 cut(s) | 244, 963, 1683, 1737 |
| BtsCI | GGATG | 2 cut(s) | 1525, 2299 |
| BtsI | GCAGTG | 2 cut(s) | 777, 2087 |
| BtsIMutI | CAGTG | 9 cut(s) | 636, 739, 777, 998, 1058, 1363, 1500, 1683, 2087 |
| BtuMI | TCGCGA | 1 cut(s) | 2127 |
| BveI | ACCTGC | 1 cut(s) | 470 |
| CaiI | CAGNNNCTG | 1 cut(s) | 363 |
| CfoI | GCGC | 6 cut(s) | 265, 371, 454, 1333, 1482, 1675 |
| Cfr10I | RCCGGY | 4 cut(s) | 785, 970, 1288, 1551 |
| ClaI | ATCGAT | 3 cut(s) | 207, 498, 651 |
| CseI | GACGC | 2 cut(s) | 9, 511 |
| Csp6I | GTAC | 3 cut(s) | 858, 1913, 2041 |
| CviAII | CATG | 7 cut(s) | 671, 706, 716, 1509, 1565, 2171, 2318 |
| CviQI | GTAC | 3 cut(s) | 858, 1913, 2041 |
| DdeI | CTNAG | 4 cut(s) | 1723, 1758, 1887, 2232 |
| DinI | GGCGCC | 1 cut(s) | 370 |
| DpnI | GATC | 9 cut(s) | 210, 459, 501, 920, 1068, 1403, 1536, 1803, 1926 |
| DpnII | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| DraI | TTTAAA | 1 cut(s) | 81 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1545 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1545 |
| EaeI | YGGCCR | 6 cut(s) | 89, 282, 304, 401, 892, 1375 |
| EagI | CGGCCG | 3 cut(s) | 89, 304, 892 |
| Eam1104I | CTCTTC | 7 cut(s) | 213, 844, 1131, 1308, 1509, 1722, 2169 |
| EarI | CTCTTC | 7 cut(s) | 213, 844, 1131, 1308, 1509, 1722, 2169 |
| EciI | GGCGGA | 3 cut(s) | 804, 957, 989 |
| EclXI | CGGCCG | 3 cut(s) | 89, 304, 892 |
| Eco130I | CCWWGG | 2 cut(s) | 705, 1508 |
| Eco24I | GRGCYC | 7 cut(s) | 663, 909, 1084, 1162, 1300, 1877, 2181 |
| Eco31I | GGTCTC | 2 cut(s) | 419, 1147 |
| Eco32I | GATATC | 1 cut(s) | 158 |
| Eco47I | GGWCC | 4 cut(s) | 976, 1492, 1554, 1880 |
| Eco52I | CGGCCG | 3 cut(s) | 89, 304, 892 |
| Eco57I | CTGAAG | 2 cut(s) | 1131, 1434 |
| Eco81I | CCTNAGG | 1 cut(s) | 1758 |
| Eco88I | CYCGRG | 3 cut(s) | 908, 1028, 1083 |
| EcoRII | CCWGG | 3 cut(s) | 431, 801, 1876 |
| EcoRV | GATATC | 1 cut(s) | 158 |
| EcoT14I | CCWWGG | 2 cut(s) | 705, 1508 |
| EcoT38I | GRGCYC | 7 cut(s) | 663, 909, 1084, 1162, 1300, 1877, 2181 |
| EgeI | GGCGCC | 1 cut(s) | 370 |
| EheI | GGCGCC | 1 cut(s) | 370 |
| ErhI | CCWWGG | 2 cut(s) | 705, 1508 |
| FaeI | CATG | 7 cut(s) | 674, 709, 719, 1512, 1568, 2174, 2321 |
| FaqI | GGGAC | 2 cut(s) | 1120, 1612 |
| FatI | CATG | 7 cut(s) | 670, 705, 715, 1508, 1564, 2170, 2317 |
| FauI | CCCGC | 2 cut(s) | 441, 2314 |
| FokI | GGATG | 2 cut(s) | 1532, 2306 |
| FriOI | GRGCYC | 7 cut(s) | 663, 909, 1084, 1162, 1300, 1877, 2181 |
| FspBI | CTAG | 3 cut(s) | 348, 461, 2280 |
| GlaI | GCGC | 6 cut(s) | 264, 370, 453, 1332, 1481, 1674 |
| GsaI | CCCAGC | 4 cut(s) | 367, 1159, 1270, 1572 |
| GsuI | CTGGAG | 2 cut(s) | 104, 824 |
| HaeII | RGCGCY | 1 cut(s) | 372 |
| HgaI | GACGC | 2 cut(s) | 9, 511 |
| HhaI | GCGC | 6 cut(s) | 265, 371, 454, 1333, 1482, 1675 |
| Hin1I | GRCGYC | 2 cut(s) | 369, 1095 |
| Hin1II | CATG | 7 cut(s) | 674, 709, 719, 1512, 1568, 2174, 2321 |
| Hin6I | GCGC | 6 cut(s) | 263, 369, 452, 1331, 1480, 1673 |
| HinP1I | GCGC | 6 cut(s) | 263, 369, 452, 1331, 1480, 1673 |
| HincII | GTYRAC | 1 cut(s) | 1102 |
| HindII | GTYRAC | 1 cut(s) | 1102 |
| HphI | GGTGA | 4 cut(s) | 604, 1604, 1966, 2164 |
| Hpy166II | GTNNAC | 1 cut(s) | 1102 |
| Hpy188I | TCNGA | 8 cut(s) | 111, 155, 338, 1249, 1435, 1449, 1492, 2047 |
| Hpy8I | GTNNAC | 1 cut(s) | 1102 |
| Hpy99I | CGWCG | 7 cut(s) | 527, 880, 905, 1100, 1175, 1442, 1551 |
| HpyAV | CCTTC | 8 cut(s) | 7, 173, 333, 1109, 1283, 1568, 1589, 2112 |
| HpyCH4III | ACNGT | 4 cut(s) | 734, 767, 1456, 2152 |
| HpyCH4IV | ACGT | 3 cut(s) | 900, 1095, 1254 |
| HpyCH4V | TGCA | 9 cut(s) | 34, 670, 819, 834, 846, 1184, 1696, 1775, 1835 |
| HpyF3I | CTNAG | 4 cut(s) | 1723, 1758, 1887, 2232 |
| HpySE526I | ACGT | 3 cut(s) | 900, 1095, 1254 |
| Hsp92I | GRCGYC | 2 cut(s) | 369, 1095 |
| Hsp92II | CATG | 7 cut(s) | 674, 709, 719, 1512, 1568, 2174, 2321 |
| HspAI | GCGC | 6 cut(s) | 263, 369, 452, 1331, 1480, 1673 |
| KasI | GGCGCC | 1 cut(s) | 368 |
| Kpn2I | TCCGGA | 1 cut(s) | 1559 |
| KpnI | GGTACC | 1 cut(s) | 1916 |
| KroI | GCCGGC | 1 cut(s) | 970 |
| KroNI | GCCGGC | 1 cut(s) | 972 |
| Kzo9I | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| LguI | GCTCTTC | 1 cut(s) | 2169 |
| LmnI | GCTCC | 6 cut(s) | 190, 772, 1408, 1795, 1991, 2089 |
| LweI | GCATC | 6 cut(s) | 262, 277, 1660, 1760, 2071, 2266 |
| MaeI | CTAG | 3 cut(s) | 348, 461, 2280 |
| MaeII | ACGT | 3 cut(s) | 900, 1095, 1254 |
| MaeIII | GTNAC | 3 cut(s) | 102, 1255, 2152 |
| MalI | GATC | 9 cut(s) | 210, 459, 501, 920, 1068, 1403, 1536, 1803, 1926 |
| MbiI | CCGCTC | 1 cut(s) | 541 |
| MboI | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| MfeI | CAATTG | 1 cut(s) | 1150 |
| MflI | RGATCY | 1 cut(s) | 457 |
| MhlI | GDGCHC | 9 cut(s) | 663, 777, 909, 1084, 1162, 1300, 1626, 1877, 2181 |
| MlsI | TGGCCA | 1 cut(s) | 1377 |
| MluNI | TGGCCA | 1 cut(s) | 1377 |
| Mly113I | GGCGCC | 1 cut(s) | 369 |
| MlyI | GAGTC | 3 cut(s) | 337, 859, 1838 |
| Mox20I | TGGCCA | 1 cut(s) | 1377 |
| MreI | CGCCGGCG | 1 cut(s) | 970 |
| MroI | TCCGGA | 1 cut(s) | 1559 |
| MroNI | GCCGGC | 1 cut(s) | 970 |
| MscI | TGGCCA | 1 cut(s) | 1377 |
| MseI | TTAA | 4 cut(s) | 8, 80, 129, 224 |
| MslI | CAYNNNNRTG | 1 cut(s) | 948 |
| Msp20I | TGGCCA | 1 cut(s) | 1377 |
| MspA1I | CMGCKG | 3 cut(s) | 1373, 1463, 2063 |
| MspR9I | CCNGG | 3 cut(s) | 433, 803, 1878 |
| MunI | CAATTG | 1 cut(s) | 1150 |
| MvaI | CCWGG | 3 cut(s) | 433, 803, 1878 |
| MvnI | CGCG | 6 cut(s) | 20, 263, 448, 454, 522, 2127 |
| NaeI | GCCGGC | 1 cut(s) | 972 |
| NarI | GGCGCC | 1 cut(s) | 369 |
| NcoI | CCATGG | 2 cut(s) | 705, 1508 |
| NdeII | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| NgoMIV | GCCGGC | 1 cut(s) | 970 |
| NlaIII | CATG | 7 cut(s) | 674, 709, 719, 1512, 1568, 2174, 2321 |
| NmuCI | GTSAC | 2 cut(s) | 102, 2152 |
| NruI | TCGCGA | 1 cut(s) | 2127 |
| NspI | RCATGY | 1 cut(s) | 1568 |
| PciSI | GCTCTTC | 1 cut(s) | 2169 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 897, 1543 |
| PdiI | GCCGGC | 1 cut(s) | 972 |
| PfeI | GAWTC | 7 cut(s) | 594, 683, 1014, 1320, 1424, 1631, 1957 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 985, 1340 |
| PfoI | TCCNGGA | 1 cut(s) | 801 |
| PleI | GAGTC | 3 cut(s) | 337, 859, 1837 |
| PluTI | GGCGCC | 1 cut(s) | 372 |
| PpsI | GAGTC | 3 cut(s) | 337, 859, 1837 |
| PshBI | ATTAAT | 1 cut(s) | 8 |
| Psp6I | CCWGG | 3 cut(s) | 431, 801, 1876 |
| PspFI | CCCAGC | 4 cut(s) | 363, 1155, 1266, 1568 |
| PspGI | CCWGG | 3 cut(s) | 431, 801, 1876 |
| PstNI | CAGNNNCTG | 1 cut(s) | 363 |
| PsuI | RGATCY | 1 cut(s) | 457 |
| RruI | TCGCGA | 1 cut(s) | 2127 |
| RsaI | GTAC | 3 cut(s) | 859, 1914, 2042 |
| RsaNI | GTAC | 3 cut(s) | 858, 1913, 2041 |
| RseI | CAYNNNNRTG | 1 cut(s) | 948 |
| SapI | GCTCTTC | 1 cut(s) | 2169 |
| SaqAI | TTAA | 4 cut(s) | 8, 80, 129, 224 |
| Sau3AI | GATC | 9 cut(s) | 208, 457, 499, 918, 1066, 1401, 1534, 1801, 1924 |
| SchI | GAGTC | 3 cut(s) | 337, 859, 1838 |
| ScrFI | CCNGG | 3 cut(s) | 433, 803, 1878 |
| SduI | GDGCHC | 9 cut(s) | 663, 777, 909, 1084, 1162, 1300, 1626, 1877, 2181 |
| SfaNI | GCATC | 6 cut(s) | 262, 277, 1660, 1760, 2071, 2266 |
| SfcI | CTRYAG | 1 cut(s) | 1866 |
| SfoI | GGCGCC | 1 cut(s) | 370 |
| SgrAI | CRCCGGYG | 1 cut(s) | 970 |
| SinI | GGWCC | 4 cut(s) | 976, 1492, 1554, 1880 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 948 |
| SmlI | CTYRAG | 3 cut(s) | 1311, 1824, 2093 |
| SmoI | CTYRAG | 3 cut(s) | 1311, 1824, 2093 |
| SspDI | GGCGCC | 1 cut(s) | 368 |
| SspMI | CTAG | 3 cut(s) | 348, 461, 2280 |
| StyD4I | CCNGG | 3 cut(s) | 431, 801, 1876 |
| StyI | CCWWGG | 2 cut(s) | 705, 1508 |
| TaaI | ACNGT | 4 cut(s) | 734, 767, 1456, 2152 |
| TaiI | ACGT | 3 cut(s) | 903, 1098, 1257 |
| TaqI | TCGA | 9 cut(s) | 207, 382, 498, 651, 681, 701, 1318, 1404, 1537 |
| TaqII | GACCGA | 1 cut(s) | 587 |
| TfiI | GAWTC | 7 cut(s) | 594, 683, 1014, 1320, 1424, 1631, 1957 |
| Tru1I | TTAA | 4 cut(s) | 8, 80, 129, 224 |
| Tru9I | TTAA | 4 cut(s) | 8, 80, 129, 224 |
| TscAI | CASTG | 9 cut(s) | 643, 739, 784, 998, 1065, 1363, 1507, 1683, 2094 |
| TseFI | GTSAC | 2 cut(s) | 102, 2152 |
| Tsp45I | GTSAC | 2 cut(s) | 102, 2152 |
| TspDTI | ATGAA | 6 cut(s) | 26, 814, 1536, 1830, 2187, 2310 |
| TspGWI | ACGGA | 2 cut(s) | 1643, 2276 |
| TspRI | CASTG | 9 cut(s) | 643, 739, 784, 998, 1065, 1363, 1507, 1683, 2094 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 985, 1340 |
| VpaK11BI | GGWCC | 4 cut(s) | 976, 1492, 1554, 1880 |
| VspI | ATTAAT | 1 cut(s) | 8 |
| XapI | RAATTY | 3 cut(s) | 69, 2129, 2224 |
| XceI | RCATGY | 1 cut(s) | 1568 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 858 |
| XspI | CTAG | 3 cut(s) | 348, 461, 2280 |
| ZraI | GACGTC | 1 cut(s) | 1096 |