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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 278, 280, 282 |
| AciI | CCGC | 9 cut(s) | 50, 63, 66, 180, 183, 186, 234, 276, 318 |
| AclWI | GGATC | 2 cut(s) | 123, 195 |
| AcoI | YGGCCR | 2 cut(s) | 169, 196 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 99 |
| AjiI | CACGTC | 1 cut(s) | 269 |
| AjnI | CCWGG | 1 cut(s) | 193 |
| Alw21I | GWGCWC | 1 cut(s) | 15 |
| AlwI | GGATC | 2 cut(s) | 123, 195 |
| AoxI | GGCC | 3 cut(s) | 169, 196, 312 |
| ApeKI | GCWGC | 2 cut(s) | 325, 342 |
| AspLEI | GCGC | 5 cut(s) | 87, 266, 280, 282, 347 |
| AspS9I | GGNCC | 1 cut(s) | 313 |
| AsuC2I | CCSGG | 1 cut(s) | 133 |
| AsuHPI | GGTGA | 2 cut(s) | 136, 221 |
| BanII | GRGCYC | 1 cut(s) | 234 |
| BauI | CACGAG | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 1 cut(s) | 15 |
| BbvI | GCAGC | 2 cut(s) | 312, 329 |
| BceAI | ACGGC | 2 cut(s) | 156, 305 |
| BciT130I | CCWGG | 1 cut(s) | 195 |
| BcnI | CCSGG | 1 cut(s) | 133 |
| BfaI | CTAG | 2 cut(s) | 222, 355 |
| BfoI | RGCGCY | 1 cut(s) | 88 |
| BisI | GCNGC | 6 cut(s) | 66, 180, 183, 186, 326, 343 |
| BlsI | GCNGC | 6 cut(s) | 67, 181, 184, 187, 327, 344 |
| Bme1390I | CCNGG | 2 cut(s) | 133, 195 |
| BmgBI | CACGTC | 1 cut(s) | 269 |
| BmgT120I | GGNCC | 1 cut(s) | 313 |
| BmiI | GGNNCC | 3 cut(s) | 137, 303, 315 |
| BmrFI | CCNGG | 2 cut(s) | 133, 195 |
| BpuEI | CTTGAG | 1 cut(s) | 329 |
| BpuMI | CCSGG | 1 cut(s) | 133 |
| BsaWI | WCCGGW | 1 cut(s) | 203 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 99 |
| Bse118I | RCCGGY | 1 cut(s) | 146 |
| BseBI | CCWGG | 1 cut(s) | 195 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 99 |
| BsePI | GCGCGC | 1 cut(s) | 278 |
| BseX3I | CGGCCG | 1 cut(s) | 169 |
| BseXI | GCAGC | 2 cut(s) | 312, 329 |
| Bsh1236I | CGCG | 3 cut(s) | 278, 280, 282 |
| Bsh1285I | CGRYCG | 1 cut(s) | 172 |
| BshFI | GGCC | 3 cut(s) | 171, 198, 314 |
| BsiEI | CGRYCG | 1 cut(s) | 172 |
| BsiHKAI | GWGCWC | 1 cut(s) | 15 |
| BsiSI | CCGG | 4 cut(s) | 133, 147, 168, 204 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 99 |
| BsnI | GGCC | 3 cut(s) | 171, 198, 314 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 234 |
| Bsp143I | GATC | 2 cut(s) | 128, 200 |
| BspACI | CCGC | 9 cut(s) | 50, 63, 66, 180, 183, 186, 234, 276, 318 |
| BspANI | GGCC | 3 cut(s) | 171, 198, 314 |
| BspFNI | CGCG | 3 cut(s) | 278, 280, 282 |
| BspLI | GGNNCC | 3 cut(s) | 137, 303, 315 |
| BspPI | GGATC | 2 cut(s) | 123, 195 |
| BsrFI | RCCGGY | 1 cut(s) | 146 |
| BssAI | RCCGGY | 1 cut(s) | 146 |
| BssHII | GCGCGC | 1 cut(s) | 278 |
| BssMI | GATC | 2 cut(s) | 128, 200 |
| BssSI | CACGAG | 1 cut(s) | 14 |
| Bst2BI | CACGAG | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 1 cut(s) | 195 |
| Bst4CI | ACNGT | 1 cut(s) | 140 |
| Bst6I | CTCTTC | 1 cut(s) | 38 |
| BstC8I | GCNNGC | 2 cut(s) | 234, 280 |
| BstFNI | CGCG | 3 cut(s) | 278, 280, 282 |
| BstH2I | RGCGCY | 1 cut(s) | 88 |
| BstHHI | GCGC | 5 cut(s) | 87, 266, 280, 282, 347 |
| BstKTI | GATC | 2 cut(s) | 131, 203 |
| BstMBI | GATC | 2 cut(s) | 128, 200 |
| BstMCI | CGRYCG | 1 cut(s) | 172 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 185, 284 |
| BstNI | CCWGG | 1 cut(s) | 195 |
| BstSCI | CCNGG | 2 cut(s) | 131, 193 |
| BstUI | CGCG | 3 cut(s) | 278, 280, 282 |
| BstV1I | GCAGC | 2 cut(s) | 312, 329 |
| BstZI | CGGCCG | 1 cut(s) | 169 |
| BsuRI | GGCC | 3 cut(s) | 171, 198, 314 |
| BtrI | CACGTC | 1 cut(s) | 269 |
| Cac8I | GCNNGC | 2 cut(s) | 234, 280 |
| CfoI | GCGC | 5 cut(s) | 87, 266, 280, 282, 347 |
| Cfr10I | RCCGGY | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 1 cut(s) | 313 |
| CviAII | CATG | 1 cut(s) | 241 |
| CviJI | RGCY | 8 cut(s) | 74, 171, 179, 198, 225, 232, 304, 314 |
| CviKI_1 | RGCY | 8 cut(s) | 74, 171, 179, 198, 225, 232, 304, 314 |
| DpnI | GATC | 2 cut(s) | 130, 202 |
| DpnII | GATC | 2 cut(s) | 128, 200 |
| EaeI | YGGCCR | 2 cut(s) | 169, 196 |
| EagI | CGGCCG | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 1 cut(s) | 38 |
| EarI | CTCTTC | 1 cut(s) | 38 |
| EclXI | CGGCCG | 1 cut(s) | 169 |
| Eco24I | GRGCYC | 1 cut(s) | 234 |
| Eco52I | CGGCCG | 1 cut(s) | 169 |
| EcoO109I | RGGNCCY | 1 cut(s) | 313 |
| EcoRII | CCWGG | 1 cut(s) | 193 |
| EcoT38I | GRGCYC | 1 cut(s) | 234 |
| FaeI | CATG | 1 cut(s) | 244 |
| FaiI | YATR | 1 cut(s) | 242 |
| FatI | CATG | 1 cut(s) | 240 |
| FauI | CCCGC | 3 cut(s) | 57, 241, 325 |
| Fnu4HI | GCNGC | 6 cut(s) | 66, 180, 183, 186, 326, 343 |
| FriOI | GRGCYC | 1 cut(s) | 234 |
| Fsp4HI | GCNGC | 6 cut(s) | 66, 180, 183, 186, 326, 343 |
| FspBI | CTAG | 2 cut(s) | 222, 355 |
| GlaI | GCGC | 5 cut(s) | 86, 265, 279, 281, 346 |
| GluI | GCNGC | 6 cut(s) | 66, 180, 183, 186, 326, 343 |
| HaeII | RGCGCY | 1 cut(s) | 88 |
| HaeIII | GGCC | 3 cut(s) | 171, 198, 314 |
| HapII | CCGG | 4 cut(s) | 133, 147, 168, 204 |
| HhaI | GCGC | 5 cut(s) | 87, 266, 280, 282, 347 |
| Hin1II | CATG | 1 cut(s) | 244 |
| Hin6I | GCGC | 5 cut(s) | 85, 264, 278, 280, 345 |
| HinP1I | GCGC | 5 cut(s) | 85, 264, 278, 280, 345 |
| HinfI | GANTC | 2 cut(s) | 26, 109 |
| HpaII | CCGG | 4 cut(s) | 133, 147, 168, 204 |
| HphI | GGTGA | 2 cut(s) | 136, 221 |
| Hpy188III | TCNNGA | 3 cut(s) | 118, 159, 308 |
| Hpy99I | CGWCG | 1 cut(s) | 273 |
| HpyAV | CCTTC | 2 cut(s) | 165, 252 |
| HpyCH4III | ACNGT | 1 cut(s) | 140 |
| HpyCH4IV | ACGT | 1 cut(s) | 268 |
| HpyCH4V | TGCA | 1 cut(s) | 252 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 185, 284 |
| HpySE526I | ACGT | 1 cut(s) | 268 |
| Hsp92II | CATG | 1 cut(s) | 244 |
| HspAI | GCGC | 5 cut(s) | 85, 264, 278, 280, 345 |
| Kzo9I | GATC | 2 cut(s) | 128, 200 |
| LmnI | GCTCC | 1 cut(s) | 301 |
| LpnPI | CCDG | 6 cut(s) | 146, 160, 180, 181, 207, 217 |
| Lsp1109I | GCAGC | 2 cut(s) | 312, 329 |
| MaeI | CTAG | 2 cut(s) | 222, 355 |
| MaeII | ACGT | 1 cut(s) | 268 |
| MaeIII | GTNAC | 2 cut(s) | 142, 217 |
| MalI | GATC | 2 cut(s) | 130, 202 |
| MauBI | CGCGCGCG | 1 cut(s) | 278 |
| MboI | GATC | 2 cut(s) | 128, 200 |
| MboII | GAAGA | 3 cut(s) | 25, 35, 224 |
| MhlI | GDGCHC | 2 cut(s) | 15, 234 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MnlI | CCTC | 5 cut(s) | 10, 41, 175, 304, 315 |
| MspI | CCGG | 4 cut(s) | 133, 147, 168, 204 |
| MspR9I | CCNGG | 2 cut(s) | 133, 195 |
| MvaI | CCWGG | 1 cut(s) | 195 |
| MvnI | CGCG | 3 cut(s) | 278, 280, 282 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 185, 284 |
| NciI | CCSGG | 1 cut(s) | 133 |
| NdeII | GATC | 2 cut(s) | 128, 200 |
| NlaIII | CATG | 1 cut(s) | 244 |
| NlaIV | GGNNCC | 3 cut(s) | 137, 303, 315 |
| NmuCI | GTSAC | 1 cut(s) | 142 |
| PauI | GCGCGC | 1 cut(s) | 278 |
| PfeI | GAWTC | 1 cut(s) | 26 |
| PfoI | TCCNGGA | 1 cut(s) | 131 |
| PkrI | GCNGC | 6 cut(s) | 67, 181, 184, 187, 327, 344 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| Psp6I | CCWGG | 1 cut(s) | 193 |
| PspGI | CCWGG | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 3 cut(s) | 137, 303, 315 |
| PspPI | GGNCC | 1 cut(s) | 313 |
| PteI | GCGCGC | 1 cut(s) | 278 |
| SatI | GCNGC | 6 cut(s) | 66, 180, 183, 186, 326, 343 |
| Sau3AI | GATC | 2 cut(s) | 128, 200 |
| Sau96I | GGNCC | 1 cut(s) | 313 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 2 cut(s) | 133, 195 |
| SduI | GDGCHC | 2 cut(s) | 15, 234 |
| SetI | ASST | 3 cut(s) | 21, 167, 271 |
| SgrAI | CRCCGGYG | 1 cut(s) | 146 |
| SmlI | CTYRAG | 1 cut(s) | 308 |
| SmoI | CTYRAG | 1 cut(s) | 308 |
| SsiI | CCGC | 9 cut(s) | 50, 63, 66, 180, 183, 186, 234, 276, 318 |
| SspMI | CTAG | 2 cut(s) | 222, 355 |
| StyD4I | CCNGG | 2 cut(s) | 131, 193 |
| TaaI | ACNGT | 1 cut(s) | 140 |
| TaiI | ACGT | 1 cut(s) | 271 |
| TaqI | TCGA | 3 cut(s) | 21, 36, 271 |
| TauI | GCSGC | 4 cut(s) | 68, 182, 185, 188 |
| TfiI | GAWTC | 1 cut(s) | 26 |
| TseFI | GTSAC | 1 cut(s) | 142 |
| TseI | GCWGC | 2 cut(s) | 325, 342 |
| Tsp45I | GTSAC | 1 cut(s) | 142 |
| XspI | CTAG | 2 cut(s) | 222, 355 |