Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PMD | PF10536 | 1 - 162 | 3e-12 | Plant mobile domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 255, 323 |
| AccII | CGCG | 3 cut(s) | 119, 438, 495 |
| AccIII | TCCGGA | 1 cut(s) | 411 |
| AciI | CCGC | 9 cut(s) | 119, 242, 292, 433, 436, 449, 458, 462, 493 |
| AclWI | GGATC | 2 cut(s) | 403, 416 |
| AcoI | YGGCCR | 3 cut(s) | 70, 163, 289 |
| AcsI | RAATTY | 1 cut(s) | 218 |
| AcyI | GRCGYC | 1 cut(s) | 324 |
| AdeI | CACNNNGTG | 1 cut(s) | 178 |
| AfaI | GTAC | 2 cut(s) | 506, 544 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 147, 320 |
| AgeI | ACCGGT | 1 cut(s) | 313 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 314 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| AlwI | GGATC | 2 cut(s) | 403, 416 |
| Aor13HI | TCCGGA | 1 cut(s) | 411 |
| AoxI | GGCC | 6 cut(s) | 37, 70, 104, 163, 289, 382 |
| ApaI | GGGCCC | 1 cut(s) | 386 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| AsiGI | ACCGGT | 1 cut(s) | 313 |
| AspLEI | GCGC | 1 cut(s) | 326 |
| AspS9I | GGNCC | 5 cut(s) | 105, 261, 382, 383, 414 |
| AsuHPI | GGTGA | 1 cut(s) | 25 |
| AvaII | GGWCC | 2 cut(s) | 261, 414 |
| BaeGI | GKGCMC | 1 cut(s) | 386 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BamHI | GGATCC | 1 cut(s) | 408 |
| BanI | GGYRCC | 2 cut(s) | 255, 323 |
| BanII | GRGCYC | 2 cut(s) | 306, 386 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BccI | CCATC | 5 cut(s) | 38, 44, 53, 141, 477 |
| BceAI | ACGGC | 2 cut(s) | 178, 304 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 471, 505 |
| BfaI | CTAG | 3 cut(s) | 269, 476, 550 |
| BfoI | RGCGCY | 1 cut(s) | 327 |
| BisI | GCNGC | 3 cut(s) | 292, 436, 493 |
| BlsI | GCNGC | 3 cut(s) | 293, 437, 494 |
| BmcAI | AGTACT | 1 cut(s) | 506 |
| Bme18I | GGWCC | 2 cut(s) | 261, 414 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 314 |
| BmgT120I | GGNCC | 5 cut(s) | 105, 261, 382, 383, 414 |
| BmiI | GGNNCC | 5 cut(s) | 257, 325, 384, 385, 410 |
| BmsI | GCATC | 2 cut(s) | 345, 367 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 48 |
| BsaHI | GRCGYC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 1 cut(s) | 101 |
| BsaWI | WCCGGW | 3 cut(s) | 258, 313, 411 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 221, 251, 491, 521 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 147, 320 |
| Bse118I | RCCGGY | 3 cut(s) | 35, 252, 313 |
| BseAI | TCCGGA | 1 cut(s) | 411 |
| BseCI | ATCGAT | 1 cut(s) | 48 |
| BseDI | CCNNGG | 1 cut(s) | 101 |
| BseGI | GGATG | 1 cut(s) | 358 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 147, 320 |
| BseRI | GAGGAG | 2 cut(s) | 499, 504 |
| BseSI | GKGCMC | 1 cut(s) | 386 |
| BseX3I | CGGCCG | 2 cut(s) | 163, 289 |
| Bsh1236I | CGCG | 3 cut(s) | 119, 438, 495 |
| Bsh1285I | CGRYCG | 2 cut(s) | 166, 292 |
| BshFI | GGCC | 6 cut(s) | 39, 72, 106, 165, 291, 384 |
| BshNI | GGYRCC | 2 cut(s) | 255, 323 |
| BshTI | ACCGGT | 1 cut(s) | 313 |
| BshVI | ATCGAT | 1 cut(s) | 48 |
| BsiEI | CGRYCG | 2 cut(s) | 166, 292 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BsiSI | CCGG | 5 cut(s) | 36, 253, 259, 314, 412 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 147, 320 |
| BsmI | GAATGC | 1 cut(s) | 532 |
| BsnI | GGCC | 6 cut(s) | 39, 72, 106, 165, 291, 384 |
| Bsp120I | GGGCCC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 3 cut(s) | 126, 306, 386 |
| Bsp13I | TCCGGA | 1 cut(s) | 411 |
| Bsp143I | GATC | 4 cut(s) | 180, 369, 408, 466 |
| Bsp19I | CCATGG | 1 cut(s) | 101 |
| BspACI | CCGC | 9 cut(s) | 119, 242, 292, 433, 436, 449, 458, 462, 493 |
| BspANI | GGCC | 6 cut(s) | 39, 72, 106, 165, 291, 384 |
| BspDI | ATCGAT | 1 cut(s) | 48 |
| BspEI | TCCGGA | 1 cut(s) | 411 |
| BspFNI | CGCG | 3 cut(s) | 119, 438, 495 |
| BspLI | GGNNCC | 5 cut(s) | 257, 325, 384, 385, 410 |
| BspPI | GGATC | 2 cut(s) | 403, 416 |
| BspT107I | GGYRCC | 2 cut(s) | 255, 323 |
| BsrFI | RCCGGY | 3 cut(s) | 35, 252, 313 |
| BssAI | RCCGGY | 3 cut(s) | 35, 252, 313 |
| BssECI | CCNNGG | 1 cut(s) | 101 |
| BssMI | GATC | 4 cut(s) | 180, 369, 408, 466 |
| BssNI | GRCGYC | 1 cut(s) | 324 |
| BssT1I | CCWWGG | 1 cut(s) | 101 |
| BstACI | GRCGYC | 1 cut(s) | 324 |
| BstC8I | GCNNGC | 3 cut(s) | 56, 246, 462 |
| BstDSI | CCRYGG | 1 cut(s) | 101 |
| BstF5I | GGATG | 1 cut(s) | 358 |
| BstFNI | CGCG | 3 cut(s) | 119, 438, 495 |
| BstH2I | RGCGCY | 1 cut(s) | 327 |
| BstHHI | GCGC | 1 cut(s) | 326 |
| BstKTI | GATC | 4 cut(s) | 183, 372, 411, 469 |
| BstMBI | GATC | 4 cut(s) | 180, 369, 408, 466 |
| BstMCI | CGRYCG | 2 cut(s) | 166, 292 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 64, 457 |
| BstNSI | RCATGY | 1 cut(s) | 340 |
| BstSLI | GKGCMC | 1 cut(s) | 386 |
| BstUI | CGCG | 3 cut(s) | 119, 438, 495 |
| BstX2I | RGATCY | 1 cut(s) | 408 |
| BstYI | RGATCY | 1 cut(s) | 408 |
| BstZI | CGGCCG | 2 cut(s) | 163, 289 |
| Bsu15I | ATCGAT | 1 cut(s) | 48 |
| BsuRI | GGCC | 6 cut(s) | 39, 72, 106, 165, 291, 384 |
| BsuTUI | ATCGAT | 1 cut(s) | 48 |
| BtgI | CCRYGG | 1 cut(s) | 101 |
| BtsCI | GGATG | 1 cut(s) | 358 |
| Cac8I | GCNNGC | 3 cut(s) | 56, 246, 462 |
| CfoI | GCGC | 1 cut(s) | 326 |
| Cfr10I | RCCGGY | 3 cut(s) | 35, 252, 313 |
| Cfr13I | GGNCC | 5 cut(s) | 105, 261, 382, 383, 414 |
| ClaI | ATCGAT | 1 cut(s) | 48 |
| Csp6I | GTAC | 2 cut(s) | 505, 543 |
| CspAI | ACCGGT | 1 cut(s) | 313 |
| CviAII | CATG | 3 cut(s) | 68, 102, 337 |
| CviQI | GTAC | 2 cut(s) | 505, 543 |
| DinI | GGCGCC | 1 cut(s) | 325 |
| DpnI | GATC | 4 cut(s) | 182, 371, 410, 468 |
| DpnII | GATC | 4 cut(s) | 180, 369, 408, 466 |
| DraIII | CACNNNGTG | 1 cut(s) | 178 |
| DriI | GACNNNNNGTC | 1 cut(s) | 314 |
| EaeI | YGGCCR | 3 cut(s) | 70, 163, 289 |
| EagI | CGGCCG | 2 cut(s) | 163, 289 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 314 |
| EciI | GGCGGA | 1 cut(s) | 422 |
| EclXI | CGGCCG | 2 cut(s) | 163, 289 |
| Eco130I | CCWWGG | 1 cut(s) | 101 |
| Eco24I | GRGCYC | 2 cut(s) | 306, 386 |
| Eco32I | GATATC | 2 cut(s) | 22, 445 |
| Eco47I | GGWCC | 2 cut(s) | 261, 414 |
| Eco52I | CGGCCG | 2 cut(s) | 163, 289 |
| EcoO109I | RGGNCCY | 1 cut(s) | 383 |
| EcoRV | GATATC | 2 cut(s) | 22, 445 |
| EcoT14I | CCWWGG | 1 cut(s) | 101 |
| EcoT22I | ATGCAT | 1 cut(s) | 360 |
| EcoT38I | GRGCYC | 2 cut(s) | 306, 386 |
| EgeI | GGCGCC | 1 cut(s) | 325 |
| EheI | GGCGCC | 1 cut(s) | 325 |
| ErhI | CCWWGG | 1 cut(s) | 101 |
| FaeI | CATG | 3 cut(s) | 71, 105, 340 |
| FaiI | YATR | 7 cut(s) | 63, 69, 103, 128, 138, 224, 338 |
| FatI | CATG | 3 cut(s) | 67, 101, 336 |
| FauI | CCCGC | 4 cut(s) | 249, 456, 465, 469 |
| Fnu4HI | GCNGC | 3 cut(s) | 292, 436, 493 |
| FokI | GGATG | 1 cut(s) | 345 |
| FriOI | GRGCYC | 2 cut(s) | 306, 386 |
| Fsp4HI | GCNGC | 3 cut(s) | 292, 436, 493 |
| FspBI | CTAG | 3 cut(s) | 269, 476, 550 |
| GlaI | GCGC | 1 cut(s) | 325 |
| GluI | GCNGC | 3 cut(s) | 292, 436, 493 |
| HaeII | RGCGCY | 1 cut(s) | 327 |
| HaeIII | GGCC | 6 cut(s) | 39, 72, 106, 165, 291, 384 |
| HapII | CCGG | 5 cut(s) | 36, 253, 259, 314, 412 |
| HhaI | GCGC | 1 cut(s) | 326 |
| Hin1I | GRCGYC | 1 cut(s) | 324 |
| Hin1II | CATG | 3 cut(s) | 71, 105, 340 |
| Hin6I | GCGC | 1 cut(s) | 324 |
| HinP1I | GCGC | 1 cut(s) | 324 |
| HincII | GTYRAC | 1 cut(s) | 87 |
| HindII | GTYRAC | 1 cut(s) | 87 |
| HinfI | GANTC | 1 cut(s) | 80 |
| HpaII | CCGG | 5 cut(s) | 36, 253, 259, 314, 412 |
| HphI | GGTGA | 1 cut(s) | 25 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy188I | TCNGA | 2 cut(s) | 185, 308 |
| Hpy188III | TCNNGA | 1 cut(s) | 412 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| Hpy99I | CGWCG | 2 cut(s) | 355, 443 |
| HpyCH4IV | ACGT | 1 cut(s) | 177 |
| HpyCH4V | TGCA | 3 cut(s) | 67, 216, 358 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 64, 457 |
| HpySE526I | ACGT | 1 cut(s) | 177 |
| Hsp92I | GRCGYC | 1 cut(s) | 324 |
| Hsp92II | CATG | 3 cut(s) | 71, 105, 340 |
| HspAI | GCGC | 1 cut(s) | 324 |
| KasI | GGCGCC | 1 cut(s) | 323 |
| Kpn2I | TCCGGA | 1 cut(s) | 411 |
| Kzo9I | GATC | 4 cut(s) | 180, 369, 408, 466 |
| LpnPI | CCDG | 5 cut(s) | 49, 266, 272, 327, 425 |
| LweI | GCATC | 2 cut(s) | 345, 367 |
| MaeI | CTAG | 3 cut(s) | 269, 476, 550 |
| MaeII | ACGT | 1 cut(s) | 177 |
| MalI | GATC | 4 cut(s) | 182, 371, 410, 468 |
| MboI | GATC | 4 cut(s) | 180, 369, 408, 466 |
| MboII | GAAGA | 1 cut(s) | 421 |
| MfeI | CAATTG | 1 cut(s) | 470 |
| MflI | RGATCY | 1 cut(s) | 408 |
| MhlI | GDGCHC | 3 cut(s) | 126, 306, 386 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 4 cut(s) | 74, 189, 218, 470 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| Mly113I | GGCGCC | 1 cut(s) | 324 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MnlI | CCTC | 7 cut(s) | 35, 179, 247, 290, 490, 520, 525 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| Mph1103I | ATGCAT | 1 cut(s) | 360 |
| MroI | TCCGGA | 1 cut(s) | 411 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspI | CCGG | 5 cut(s) | 36, 253, 259, 314, 412 |
| MunI | CAATTG | 1 cut(s) | 470 |
| Mva1269I | GAATGC | 1 cut(s) | 532 |
| MvnI | CGCG | 3 cut(s) | 119, 438, 495 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 64, 457 |
| NarI | GGCGCC | 1 cut(s) | 324 |
| NcoI | CCATGG | 1 cut(s) | 101 |
| NdeII | GATC | 4 cut(s) | 180, 369, 408, 466 |
| NlaIII | CATG | 3 cut(s) | 71, 105, 340 |
| NlaIV | GGNNCC | 5 cut(s) | 257, 325, 384, 385, 410 |
| NmeAIII | GCCGAG | 1 cut(s) | 191 |
| NsiI | ATGCAT | 1 cut(s) | 360 |
| NspI | RCATGY | 1 cut(s) | 340 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 347 |
| PctI | GAATGC | 1 cut(s) | 532 |
| PflFI | GACNNNGTC | 1 cut(s) | 113 |
| PinAI | ACCGGT | 1 cut(s) | 313 |
| PkrI | GCNGC | 3 cut(s) | 293, 437, 494 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PluTI | GGCGCC | 1 cut(s) | 327 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PspN4I | GGNNCC | 5 cut(s) | 257, 325, 384, 385, 410 |
| PspOMI | GGGCCC | 1 cut(s) | 382 |
| PspPI | GGNCC | 5 cut(s) | 105, 261, 382, 383, 414 |
| PsuI | RGATCY | 1 cut(s) | 408 |
| PsyI | GACNNNGTC | 1 cut(s) | 113 |
| RsaI | GTAC | 2 cut(s) | 506, 544 |
| RsaNI | GTAC | 2 cut(s) | 505, 543 |
| SatI | GCNGC | 3 cut(s) | 292, 436, 493 |
| Sau3AI | GATC | 4 cut(s) | 180, 369, 408, 466 |
| Sau96I | GGNCC | 5 cut(s) | 105, 261, 382, 383, 414 |
| ScaI | AGTACT | 1 cut(s) | 506 |
| SchI | GAGTC | 1 cut(s) | 74 |
| SduI | GDGCHC | 3 cut(s) | 126, 306, 386 |
| SetI | ASST | 5 cut(s) | 117, 180, 266, 419, 481 |
| SfaNI | GCATC | 2 cut(s) | 345, 367 |
| SfoI | GGCGCC | 1 cut(s) | 325 |
| SinI | GGWCC | 2 cut(s) | 261, 414 |
| SmlI | CTYRAG | 1 cut(s) | 200 |
| SmoI | CTYRAG | 1 cut(s) | 200 |
| Sse9I | AATT | 4 cut(s) | 74, 189, 218, 470 |
| SsiI | CCGC | 9 cut(s) | 119, 242, 292, 433, 436, 449, 458, 462, 493 |
| SspDI | GGCGCC | 1 cut(s) | 323 |
| SspMI | CTAG | 3 cut(s) | 269, 476, 550 |
| StyI | CCWWGG | 1 cut(s) | 101 |
| TaiI | ACGT | 1 cut(s) | 180 |
| TaqI | TCGA | 4 cut(s) | 48, 97, 481, 524 |
| TasI | AATT | 4 cut(s) | 74, 189, 218, 470 |
| TatI | WGTACW | 1 cut(s) | 504 |
| TauI | GCSGC | 3 cut(s) | 294, 438, 495 |
| TspDTI | ATGAA | 2 cut(s) | 125, 211 |
| TspGWI | ACGGA | 2 cut(s) | 406, 421 |
| Tth111I | GACNNNGTC | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 2 cut(s) | 261, 414 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XceI | RCATGY | 1 cut(s) | 340 |
| XspI | CTAG | 3 cut(s) | 269, 476, 550 |
| ZrmI | AGTACT | 1 cut(s) | 506 |
| Zsp2I | ATGCAT | 1 cut(s) | 360 |