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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 173, 236 |
| AciI | CCGC | 5 cut(s) | 34, 234, 245, 248, 349 |
| AcoI | YGGCCR | 1 cut(s) | 242 |
| AcyI | GRCGYC | 1 cut(s) | 133 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 158, 240 |
| AgsI | TTSAA | 2 cut(s) | 109, 156 |
| AluBI | AGCT | 3 cut(s) | 82, 177, 309 |
| AluI | AGCT | 3 cut(s) | 82, 177, 309 |
| Alw21I | GWGCWC | 3 cut(s) | 84, 116, 179 |
| Alw26I | GTCTC | 1 cut(s) | 27 |
| AoxI | GGCC | 3 cut(s) | 141, 186, 242 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 44, 76 |
| AspLEI | GCGC | 2 cut(s) | 233, 238 |
| AspS9I | GGNCC | 2 cut(s) | 161, 187 |
| AsuC2I | CCSGG | 2 cut(s) | 195, 241 |
| AsuHPI | GGTGA | 4 cut(s) | 138, 256, 293, 326 |
| AsuII | TTCGAA | 1 cut(s) | 127 |
| AvaII | GGWCC | 1 cut(s) | 161 |
| BanII | GRGCYC | 2 cut(s) | 84, 179 |
| BbsI | GAAGAC | 1 cut(s) | 136 |
| Bbv12I | GWGCWC | 3 cut(s) | 84, 116, 179 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 210, 244 |
| BcnI | CCSGG | 2 cut(s) | 195, 241 |
| BcoDI | GTCTC | 1 cut(s) | 27 |
| BisI | GCNGC | 3 cut(s) | 234, 245, 248 |
| BlsI | GCNGC | 3 cut(s) | 235, 246, 249 |
| Bme1390I | CCNGG | 2 cut(s) | 195, 241 |
| Bme18I | GGWCC | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 2 cut(s) | 161, 187 |
| BmrFI | CCNGG | 2 cut(s) | 195, 241 |
| BmsI | GCATC | 1 cut(s) | 207 |
| BpiI | GAAGAC | 1 cut(s) | 136 |
| Bpu14I | TTCGAA | 1 cut(s) | 127 |
| BpuMI | CCSGG | 2 cut(s) | 195, 241 |
| BsaHI | GRCGYC | 1 cut(s) | 133 |
| BsaI | GGTCTC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 1 cut(s) | 239 |
| BsaWI | WCCGGW | 3 cut(s) | 46, 272, 281 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 161, 191 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 158, 240 |
| Bse118I | RCCGGY | 1 cut(s) | 184 |
| BseDI | CCNNGG | 1 cut(s) | 239 |
| BseGI | GGATG | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 158, 240 |
| BseRI | GAGGAG | 1 cut(s) | 169 |
| BseX3I | CGGCCG | 1 cut(s) | 242 |
| BseYI | CCCAGC | 1 cut(s) | 189 |
| Bsh1236I | CGCG | 2 cut(s) | 173, 236 |
| Bsh1285I | CGRYCG | 1 cut(s) | 245 |
| BshFI | GGCC | 3 cut(s) | 143, 188, 244 |
| BsiEI | CGRYCG | 1 cut(s) | 245 |
| BsiHKAI | GWGCWC | 3 cut(s) | 84, 116, 179 |
| BsiSI | CCGG | 7 cut(s) | 37, 47, 185, 194, 241, 273, 282 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 158, 240 |
| BsmAI | GTCTC | 1 cut(s) | 27 |
| BsnI | GGCC | 3 cut(s) | 143, 188, 244 |
| Bso31I | GGTCTC | 1 cut(s) | 27 |
| Bsp119I | TTCGAA | 1 cut(s) | 127 |
| Bsp1286I | GDGCHC | 3 cut(s) | 84, 116, 179 |
| BspACI | CCGC | 5 cut(s) | 34, 234, 245, 248, 349 |
| BspANI | GGCC | 3 cut(s) | 143, 188, 244 |
| BspFNI | CGCG | 2 cut(s) | 173, 236 |
| BspT104I | TTCGAA | 1 cut(s) | 127 |
| BspTNI | GGTCTC | 1 cut(s) | 27 |
| BsrFI | RCCGGY | 1 cut(s) | 184 |
| BssAI | RCCGGY | 1 cut(s) | 184 |
| BssECI | CCNNGG | 1 cut(s) | 239 |
| BssNI | GRCGYC | 1 cut(s) | 133 |
| Bst4CI | ACNGT | 3 cut(s) | 258, 314, 357 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstACI | GRCGYC | 1 cut(s) | 133 |
| BstBI | TTCGAA | 1 cut(s) | 127 |
| BstC8I | GCNNGC | 5 cut(s) | 80, 116, 120, 175, 186 |
| BstF5I | GGATG | 1 cut(s) | 55 |
| BstFNI | CGCG | 2 cut(s) | 173, 236 |
| BstHHI | GCGC | 2 cut(s) | 233, 238 |
| BstMAI | GTCTC | 1 cut(s) | 27 |
| BstMCI | CGRYCG | 1 cut(s) | 245 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 190, 244 |
| BstSCI | CCNGG | 2 cut(s) | 193, 239 |
| BstUI | CGCG | 2 cut(s) | 173, 236 |
| BstV2I | GAAGAC | 1 cut(s) | 136 |
| BstZI | CGGCCG | 1 cut(s) | 242 |
| BsuRI | GGCC | 3 cut(s) | 143, 188, 244 |
| BtsCI | GGATG | 1 cut(s) | 55 |
| BtsIMutI | CAGTG | 1 cut(s) | 263 |
| Cac8I | GCNNGC | 5 cut(s) | 80, 116, 120, 175, 186 |
| CfoI | GCGC | 2 cut(s) | 233, 238 |
| Cfr10I | RCCGGY | 1 cut(s) | 184 |
| Cfr13I | GGNCC | 2 cut(s) | 161, 187 |
| CseI | GACGC | 1 cut(s) | 141 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviJI | RGCY | 7 cut(s) | 82, 143, 177, 188, 193, 244, 309 |
| CviKI_1 | RGCY | 7 cut(s) | 82, 143, 177, 188, 193, 244, 309 |
| CviQI | GTAC | 1 cut(s) | 297 |
| EaeI | YGGCCR | 1 cut(s) | 242 |
| EagI | CGGCCG | 1 cut(s) | 242 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Ecl136II | GAGCTC | 2 cut(s) | 82, 177 |
| EclXI | CGGCCG | 1 cut(s) | 242 |
| Eco147I | AGGCCT | 1 cut(s) | 143 |
| Eco24I | GRGCYC | 2 cut(s) | 84, 179 |
| Eco31I | GGTCTC | 1 cut(s) | 27 |
| Eco47I | GGWCC | 1 cut(s) | 161 |
| Eco52I | CGGCCG | 1 cut(s) | 242 |
| Eco53kI | GAGCTC | 2 cut(s) | 82, 177 |
| EcoICRI | GAGCTC | 2 cut(s) | 82, 177 |
| EcoT38I | GRGCYC | 2 cut(s) | 84, 179 |
| FaiI | YATR | 1 cut(s) | 93 |
| FauI | CCCGC | 1 cut(s) | 356 |
| Fnu4HI | GCNGC | 3 cut(s) | 234, 245, 248 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 2 cut(s) | 84, 179 |
| Fsp4HI | GCNGC | 3 cut(s) | 234, 245, 248 |
| GlaI | GCGC | 2 cut(s) | 232, 237 |
| GluI | GCNGC | 3 cut(s) | 234, 245, 248 |
| GsaI | CCCAGC | 1 cut(s) | 193 |
| HaeIII | GGCC | 3 cut(s) | 143, 188, 244 |
| HapII | CCGG | 7 cut(s) | 37, 47, 185, 194, 241, 273, 282 |
| HgaI | GACGC | 1 cut(s) | 141 |
| HhaI | GCGC | 2 cut(s) | 233, 238 |
| Hin1I | GRCGYC | 1 cut(s) | 133 |
| Hin6I | GCGC | 2 cut(s) | 231, 236 |
| HinP1I | GCGC | 2 cut(s) | 231, 236 |
| HincII | GTYRAC | 1 cut(s) | 31 |
| HindII | GTYRAC | 1 cut(s) | 31 |
| HinfI | GANTC | 2 cut(s) | 40, 320 |
| HpaII | CCGG | 7 cut(s) | 37, 47, 185, 194, 241, 273, 282 |
| HphI | GGTGA | 4 cut(s) | 138, 256, 293, 326 |
| Hpy166II | GTNNAC | 2 cut(s) | 31, 212 |
| Hpy188I | TCNGA | 2 cut(s) | 86, 165 |
| Hpy188III | TCNNGA | 1 cut(s) | 209 |
| Hpy8I | GTNNAC | 2 cut(s) | 31, 212 |
| Hpy99I | CGWCG | 1 cut(s) | 346 |
| HpyAV | CCTTC | 3 cut(s) | 162, 216, 285 |
| HpyCH4III | ACNGT | 3 cut(s) | 258, 314, 357 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 190, 244 |
| Hsp92I | GRCGYC | 1 cut(s) | 133 |
| HspAI | GCGC | 2 cut(s) | 231, 236 |
| KroI | GCCGGC | 1 cut(s) | 184 |
| KroNI | GCCGGC | 1 cut(s) | 186 |
| LmnI | GCTCC | 1 cut(s) | 182 |
| LpnPI | CCDG | 9 cut(s) | 50, 60, 125, 198, 203, 207, 254, 286, 295 |
| LweI | GCATC | 1 cut(s) | 207 |
| MboII | GAAGA | 6 cut(s) | 52, 141, 315, 318, 321, 324 |
| MhlI | GDGCHC | 3 cut(s) | 84, 116, 179 |
| MluCI | AATT | 1 cut(s) | 204 |
| MlyI | GAGTC | 1 cut(s) | 34 |
| MmeI | TCCRAC | 1 cut(s) | 188 |
| MnlI | CCTC | 5 cut(s) | 12, 154, 190, 228, 310 |
| MroNI | GCCGGC | 1 cut(s) | 184 |
| MspI | CCGG | 7 cut(s) | 37, 47, 185, 194, 241, 273, 282 |
| MspR9I | CCNGG | 2 cut(s) | 195, 241 |
| MteI | GCGCNGCGC | 1 cut(s) | 234 |
| MvnI | CGCG | 2 cut(s) | 173, 236 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 190, 244 |
| NaeI | GCCGGC | 1 cut(s) | 186 |
| NciI | CCSGG | 2 cut(s) | 195, 241 |
| NgoMIV | GCCGGC | 1 cut(s) | 184 |
| NspV | TTCGAA | 1 cut(s) | 127 |
| PceI | AGGCCT | 1 cut(s) | 143 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 341 |
| PdiI | GCCGGC | 1 cut(s) | 186 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 235, 246, 249 |
| PleI | GAGTC | 1 cut(s) | 34 |
| PpsI | GAGTC | 1 cut(s) | 34 |
| Psp124BI | GAGCTC | 2 cut(s) | 84, 179 |
| PspFI | CCCAGC | 1 cut(s) | 189 |
| PspPI | GGNCC | 2 cut(s) | 161, 187 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| SacI | GAGCTC | 2 cut(s) | 84, 179 |
| SatI | GCNGC | 3 cut(s) | 234, 245, 248 |
| Sau96I | GGNCC | 2 cut(s) | 161, 187 |
| SchI | GAGTC | 1 cut(s) | 34 |
| ScrFI | CCNGG | 2 cut(s) | 195, 241 |
| SduI | GDGCHC | 3 cut(s) | 84, 116, 179 |
| SetI | ASST | 6 cut(s) | 23, 84, 170, 179, 220, 311 |
| SfaNI | GCATC | 1 cut(s) | 207 |
| SfuI | TTCGAA | 1 cut(s) | 127 |
| SinI | GGWCC | 1 cut(s) | 161 |
| Sse9I | AATT | 1 cut(s) | 204 |
| SseBI | AGGCCT | 1 cut(s) | 143 |
| SsiI | CCGC | 5 cut(s) | 34, 234, 245, 248, 349 |
| SstI | GAGCTC | 2 cut(s) | 84, 179 |
| StuI | AGGCCT | 1 cut(s) | 143 |
| StyD4I | CCNGG | 2 cut(s) | 193, 239 |
| TaaI | ACNGT | 3 cut(s) | 258, 314, 357 |
| TaqI | TCGA | 3 cut(s) | 127, 220, 335 |
| TasI | AATT | 1 cut(s) | 204 |
| TauI | GCSGC | 3 cut(s) | 236, 247, 250 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| TscAI | CASTG | 1 cut(s) | 263 |
| TspRI | CASTG | 1 cut(s) | 263 |
| VpaK11BI | GGWCC | 1 cut(s) | 161 |