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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 105, 172 |
| AccII | CGCG | 4 cut(s) | 32, 285, 359, 429 |
| AccIII | TCCGGA | 2 cut(s) | 258, 451 |
| AclWI | GGATC | 3 cut(s) | 250, 263, 383 |
| AcoI | YGGCCR | 2 cut(s) | 3, 139 |
| AcsI | RAATTY | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 109, 137, 169 |
| AgeI | ACCGGT | 1 cut(s) | 162 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 163 |
| AjnI | CCWGG | 1 cut(s) | 108 |
| AluBI | AGCT | 1 cut(s) | 482 |
| AluI | AGCT | 1 cut(s) | 482 |
| Alw21I | GWGCWC | 1 cut(s) | 484 |
| Alw26I | GTCTC | 1 cut(s) | 439 |
| AlwI | GGATC | 3 cut(s) | 250, 263, 383 |
| Aor13HI | TCCGGA | 2 cut(s) | 258, 451 |
| AoxI | GGCC | 4 cut(s) | 3, 127, 139, 231 |
| ApoI | RAATTY | 1 cut(s) | 70 |
| AsiGI | ACCGGT | 1 cut(s) | 162 |
| AspLEI | GCGC | 1 cut(s) | 431 |
| AspS9I | GGNCC | 4 cut(s) | 112, 128, 232, 261 |
| AsuC2I | CCSGG | 1 cut(s) | 384 |
| AvaII | GGWCC | 2 cut(s) | 112, 261 |
| BaeGI | GKGCMC | 1 cut(s) | 177 |
| BamHI | GGATCC | 1 cut(s) | 255 |
| BanI | GGYRCC | 2 cut(s) | 105, 172 |
| BanII | GRGCYC | 1 cut(s) | 484 |
| Bbv12I | GWGCWC | 1 cut(s) | 484 |
| BccI | CCATC | 1 cut(s) | 341 |
| BceAI | ACGGC | 5 cut(s) | 32, 142, 154, 174, 416 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 335, 369, 468 |
| BciT130I | CCWGG | 1 cut(s) | 110 |
| BcnI | CCSGG | 1 cut(s) | 384 |
| BcoDI | GTCTC | 1 cut(s) | 439 |
| BisI | GCNGC | 6 cut(s) | 142, 283, 327, 357, 427, 460 |
| BlsI | GCNGC | 6 cut(s) | 143, 284, 328, 358, 428, 461 |
| Bme1390I | CCNGG | 2 cut(s) | 110, 384 |
| Bme18I | GGWCC | 2 cut(s) | 112, 261 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 163 |
| BmgT120I | GGNCC | 4 cut(s) | 112, 128, 232, 261 |
| BmiI | GGNNCC | 5 cut(s) | 107, 174, 234, 257, 376 |
| BmrFI | CCNGG | 2 cut(s) | 110, 384 |
| BmsI | GCATC | 2 cut(s) | 194, 216 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 2 cut(s) | 382, 463 |
| BsaWI | WCCGGW | 4 cut(s) | 35, 162, 258, 451 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 109, 137, 169 |
| Bse118I | RCCGGY | 3 cut(s) | 5, 102, 162 |
| BseAI | TCCGGA | 2 cut(s) | 258, 451 |
| BseBI | CCWGG | 1 cut(s) | 110 |
| BseDI | CCNNGG | 2 cut(s) | 382, 463 |
| BseGI | GGATG | 2 cut(s) | 207, 448 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 109, 137, 169 |
| BseRI | GAGGAG | 2 cut(s) | 77, 427 |
| BseSI | GKGCMC | 1 cut(s) | 177 |
| BseX3I | CGGCCG | 1 cut(s) | 139 |
| Bsh1236I | CGCG | 4 cut(s) | 32, 285, 359, 429 |
| Bsh1285I | CGRYCG | 2 cut(s) | 36, 142 |
| BshFI | GGCC | 4 cut(s) | 5, 129, 141, 233 |
| BshNI | GGYRCC | 2 cut(s) | 105, 172 |
| BshTI | ACCGGT | 1 cut(s) | 162 |
| BsiEI | CGRYCG | 2 cut(s) | 36, 142 |
| BsiHKAI | GWGCWC | 1 cut(s) | 484 |
| BsiSI | CCGG | 8 cut(s) | 6, 36, 103, 163, 230, 259, 384, 452 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 109, 137, 169 |
| BsmAI | GTCTC | 1 cut(s) | 439 |
| BsmBI | CGTCTC | 1 cut(s) | 439 |
| BsnI | GGCC | 4 cut(s) | 5, 129, 141, 233 |
| Bsp1286I | GDGCHC | 2 cut(s) | 177, 484 |
| Bsp13I | TCCGGA | 2 cut(s) | 258, 451 |
| Bsp143I | GATC | 4 cut(s) | 218, 255, 331, 388 |
| BspANI | GGCC | 4 cut(s) | 5, 129, 141, 233 |
| BspEI | TCCGGA | 2 cut(s) | 258, 451 |
| BspFNI | CGCG | 4 cut(s) | 32, 285, 359, 429 |
| BspLI | GGNNCC | 5 cut(s) | 107, 174, 234, 257, 376 |
| BspPI | GGATC | 3 cut(s) | 250, 263, 383 |
| BspT107I | GGYRCC | 2 cut(s) | 105, 172 |
| BsrFI | RCCGGY | 3 cut(s) | 5, 102, 162 |
| BssAI | RCCGGY | 3 cut(s) | 5, 102, 162 |
| BssECI | CCNNGG | 2 cut(s) | 382, 463 |
| BssMI | GATC | 4 cut(s) | 218, 255, 331, 388 |
| Bst2UI | CCWGG | 1 cut(s) | 110 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 304 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 96, 187, 412 |
| BstF5I | GGATG | 2 cut(s) | 207, 448 |
| BstFNI | CGCG | 4 cut(s) | 32, 285, 359, 429 |
| BstHHI | GCGC | 1 cut(s) | 431 |
| BstKTI | GATC | 4 cut(s) | 221, 258, 334, 391 |
| BstMAI | GTCTC | 1 cut(s) | 439 |
| BstMBI | GATC | 4 cut(s) | 218, 255, 331, 388 |
| BstMCI | CGRYCG | 2 cut(s) | 36, 142 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 150, 304, 323, 393, 416 |
| BstNI | CCWGG | 1 cut(s) | 110 |
| BstNSI | RCATGY | 1 cut(s) | 189 |
| BstSCI | CCNGG | 2 cut(s) | 108, 382 |
| BstSLI | GKGCMC | 1 cut(s) | 177 |
| BstUI | CGCG | 4 cut(s) | 32, 285, 359, 429 |
| BstX2I | RGATCY | 1 cut(s) | 255 |
| BstYI | RGATCY | 1 cut(s) | 255 |
| BstZI | CGGCCG | 1 cut(s) | 139 |
| BsuRI | GGCC | 4 cut(s) | 5, 129, 141, 233 |
| BtgZI | GCGATG | 1 cut(s) | 360 |
| BtsCI | GGATG | 2 cut(s) | 207, 448 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 96, 187, 412 |
| CfoI | GCGC | 1 cut(s) | 431 |
| Cfr10I | RCCGGY | 3 cut(s) | 5, 102, 162 |
| Cfr13I | GGNCC | 4 cut(s) | 112, 128, 232, 261 |
| CspAI | ACCGGT | 1 cut(s) | 162 |
| CviAII | CATG | 1 cut(s) | 186 |
| CviJI | RGCY | 9 cut(s) | 5, 64, 98, 129, 141, 153, 233, 375, 482 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 64, 98, 129, 141, 153, 233, 375, 482 |
| DpnI | GATC | 4 cut(s) | 220, 257, 333, 390 |
| DpnII | GATC | 4 cut(s) | 218, 255, 331, 388 |
| DriI | GACNNNNNGTC | 1 cut(s) | 163 |
| EaeI | YGGCCR | 2 cut(s) | 3, 139 |
| EagI | CGGCCG | 1 cut(s) | 139 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 163 |
| EciI | GGCGGA | 2 cut(s) | 269, 413 |
| Ecl136II | GAGCTC | 1 cut(s) | 482 |
| EclXI | CGGCCG | 1 cut(s) | 139 |
| Eco24I | GRGCYC | 1 cut(s) | 484 |
| Eco32I | GATATC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 2 cut(s) | 112, 261 |
| Eco52I | CGGCCG | 1 cut(s) | 139 |
| Eco53kI | GAGCTC | 1 cut(s) | 482 |
| EcoICRI | GAGCTC | 1 cut(s) | 482 |
| EcoRII | CCWGG | 1 cut(s) | 108 |
| EcoRV | GATATC | 1 cut(s) | 292 |
| EcoT22I | ATGCAT | 1 cut(s) | 209 |
| EcoT38I | GRGCYC | 1 cut(s) | 484 |
| Esp3I | CGTCTC | 1 cut(s) | 439 |
| FaeI | CATG | 1 cut(s) | 189 |
| FaiI | YATR | 5 cut(s) | 76, 187, 310, 372, 487 |
| FatI | CATG | 1 cut(s) | 185 |
| FauI | CCCGC | 5 cut(s) | 12, 99, 303, 322, 331 |
| Fnu4HI | GCNGC | 6 cut(s) | 142, 283, 327, 357, 427, 460 |
| FokI | GGATG | 2 cut(s) | 194, 435 |
| FriOI | GRGCYC | 1 cut(s) | 484 |
| Fsp4HI | GCNGC | 6 cut(s) | 142, 283, 327, 357, 427, 460 |
| GlaI | GCGC | 1 cut(s) | 430 |
| GluI | GCNGC | 6 cut(s) | 142, 283, 327, 357, 427, 460 |
| HaeIII | GGCC | 4 cut(s) | 5, 129, 141, 233 |
| HapII | CCGG | 8 cut(s) | 6, 36, 103, 163, 230, 259, 384, 452 |
| HhaI | GCGC | 1 cut(s) | 431 |
| Hin1II | CATG | 1 cut(s) | 189 |
| Hin6I | GCGC | 1 cut(s) | 429 |
| HinP1I | GCGC | 1 cut(s) | 429 |
| HpaII | CCGG | 8 cut(s) | 6, 36, 103, 163, 230, 259, 384, 452 |
| Hpy188I | TCNGA | 4 cut(s) | 157, 241, 255, 446 |
| Hpy188III | TCNNGA | 3 cut(s) | 216, 259, 452 |
| Hpy99I | CGWCG | 1 cut(s) | 204 |
| HpyAV | CCTTC | 2 cut(s) | 58, 246 |
| HpyCH4V | TGCA | 1 cut(s) | 207 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 150, 304, 323, 393, 416 |
| Hsp92II | CATG | 1 cut(s) | 189 |
| HspAI | GCGC | 1 cut(s) | 429 |
| Kpn2I | TCCGGA | 2 cut(s) | 258, 451 |
| KroI | GCCGGC | 1 cut(s) | 5 |
| KroNI | GCCGGC | 1 cut(s) | 7 |
| Kzo9I | GATC | 4 cut(s) | 218, 255, 331, 388 |
| LmnI | GCTCC | 2 cut(s) | 380, 494 |
| LweI | GCATC | 2 cut(s) | 194, 216 |
| MalI | GATC | 4 cut(s) | 220, 257, 333, 390 |
| MboI | GATC | 4 cut(s) | 218, 255, 331, 388 |
| MboII | GAAGA | 2 cut(s) | 268, 299 |
| MfeI | CAATTG | 1 cut(s) | 335 |
| MflI | RGATCY | 1 cut(s) | 255 |
| MhlI | GDGCHC | 2 cut(s) | 177, 484 |
| MluCI | AATT | 3 cut(s) | 42, 70, 335 |
| MnlI | CCTC | 8 cut(s) | 32, 95, 98, 354, 389, 402, 448, 458 |
| Mph1103I | ATGCAT | 1 cut(s) | 209 |
| MroI | TCCGGA | 2 cut(s) | 258, 451 |
| MroNI | GCCGGC | 1 cut(s) | 5 |
| MspI | CCGG | 8 cut(s) | 6, 36, 103, 163, 230, 259, 384, 452 |
| MspR9I | CCNGG | 2 cut(s) | 110, 384 |
| MunI | CAATTG | 1 cut(s) | 335 |
| MvaI | CCWGG | 1 cut(s) | 110 |
| MvnI | CGCG | 4 cut(s) | 32, 285, 359, 429 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 150, 304, 323, 393, 416 |
| NaeI | GCCGGC | 1 cut(s) | 7 |
| NciI | CCSGG | 1 cut(s) | 384 |
| NdeII | GATC | 4 cut(s) | 218, 255, 331, 388 |
| NgoMIV | GCCGGC | 1 cut(s) | 5 |
| NlaIII | CATG | 1 cut(s) | 189 |
| NlaIV | GGNNCC | 5 cut(s) | 107, 174, 234, 257, 376 |
| NmeAIII | GCCGAG | 1 cut(s) | 488 |
| NsiI | ATGCAT | 1 cut(s) | 209 |
| NspI | RCATGY | 1 cut(s) | 189 |
| PaeI | GCATGC | 1 cut(s) | 189 |
| PdiI | GCCGGC | 1 cut(s) | 7 |
| PinAI | ACCGGT | 1 cut(s) | 162 |
| PkrI | GCNGC | 6 cut(s) | 143, 284, 328, 358, 428, 461 |
| Psp124BI | GAGCTC | 1 cut(s) | 484 |
| Psp6I | CCWGG | 1 cut(s) | 108 |
| PspGI | CCWGG | 1 cut(s) | 108 |
| PspN4I | GGNNCC | 5 cut(s) | 107, 174, 234, 257, 376 |
| PspPI | GGNCC | 4 cut(s) | 112, 128, 232, 261 |
| PsuI | RGATCY | 1 cut(s) | 255 |
| SacI | GAGCTC | 1 cut(s) | 484 |
| SatI | GCNGC | 6 cut(s) | 142, 283, 327, 357, 427, 460 |
| Sau3AI | GATC | 4 cut(s) | 218, 255, 331, 388 |
| Sau96I | GGNCC | 4 cut(s) | 112, 128, 232, 261 |
| ScrFI | CCNGG | 2 cut(s) | 110, 384 |
| SduI | GDGCHC | 2 cut(s) | 177, 484 |
| SetI | ASST | 5 cut(s) | 87, 111, 117, 266, 484 |
| SfaNI | GCATC | 2 cut(s) | 194, 216 |
| SinI | GGWCC | 2 cut(s) | 112, 261 |
| SmlI | CTYRAG | 1 cut(s) | 53 |
| SmoI | CTYRAG | 1 cut(s) | 53 |
| SphI | GCATGC | 1 cut(s) | 189 |
| Sse9I | AATT | 3 cut(s) | 42, 70, 335 |
| SstI | GAGCTC | 1 cut(s) | 484 |
| StyD4I | CCNGG | 2 cut(s) | 108, 382 |
| TaqI | TCGA | 1 cut(s) | 215 |
| TasI | AATT | 3 cut(s) | 42, 70, 335 |
| TauI | GCSGC | 6 cut(s) | 144, 285, 329, 359, 429, 462 |
| TspDTI | ATGAA | 1 cut(s) | 63 |
| VpaK11BI | GGWCC | 2 cut(s) | 112, 261 |
| XapI | RAATTY | 1 cut(s) | 70 |
| XceI | RCATGY | 1 cut(s) | 189 |
| Zsp2I | ATGCAT | 1 cut(s) | 209 |