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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 296 |
| AatII | GACGTC | 1 cut(s) | 353 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 448 |
| AccII | CGCG | 2 cut(s) | 42, 243 |
| AccIII | TCCGGA | 1 cut(s) | 522 |
| AclWI | GGATC | 4 cut(s) | 254, 330, 369, 427 |
| AcoI | YGGCCR | 3 cut(s) | 12, 148, 183 |
| AcsI | RAATTY | 1 cut(s) | 114 |
| AcyI | GRCGYC | 1 cut(s) | 350 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 252, 264, 315, 343, 448 |
| AgeI | ACCGGT | 1 cut(s) | 207 |
| AgsI | TTSAA | 2 cut(s) | 304, 411 |
| AluBI | AGCT | 1 cut(s) | 459 |
| AluI | AGCT | 1 cut(s) | 459 |
| Alw26I | GTCTC | 2 cut(s) | 341, 357 |
| AlwI | GGATC | 4 cut(s) | 254, 330, 369, 427 |
| Ama87I | CYCGRG | 1 cut(s) | 464 |
| Aor13HI | TCCGGA | 1 cut(s) | 522 |
| AoxI | GGCC | 3 cut(s) | 12, 148, 183 |
| ApoI | RAATTY | 1 cut(s) | 114 |
| AsiGI | ACCGGT | 1 cut(s) | 207 |
| AspLEI | GCGC | 1 cut(s) | 245 |
| AspS9I | GGNCC | 2 cut(s) | 255, 439 |
| AsuC2I | CCSGG | 1 cut(s) | 437 |
| AvaI | CYCGRG | 1 cut(s) | 464 |
| AvaII | GGWCC | 2 cut(s) | 255, 439 |
| BauI | CACGAG | 1 cut(s) | 495 |
| BbsI | GAAGAC | 2 cut(s) | 44, 292 |
| BceAI | ACGGC | 1 cut(s) | 173 |
| BcnI | CCSGG | 1 cut(s) | 437 |
| BcoDI | GTCTC | 2 cut(s) | 341, 357 |
| BisI | GCNGC | 5 cut(s) | 12, 15, 148, 186, 217 |
| BlsI | GCNGC | 5 cut(s) | 13, 16, 149, 187, 218 |
| Bme1390I | CCNGG | 1 cut(s) | 437 |
| Bme18I | GGWCC | 2 cut(s) | 255, 439 |
| BmeT110I | CYCGRG | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 2 cut(s) | 255, 439 |
| BmrFI | CCNGG | 1 cut(s) | 437 |
| BmsI | GCATC | 1 cut(s) | 478 |
| BpiI | GAAGAC | 2 cut(s) | 44, 292 |
| BpmI | CTGGAG | 1 cut(s) | 117 |
| Bpu10I | CCTNAGC | 1 cut(s) | 369 |
| BpuMI | CCSGG | 1 cut(s) | 437 |
| BsaHI | GRCGYC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 3 cut(s) | 40, 251, 263 |
| BsaWI | WCCGGW | 3 cut(s) | 79, 207, 522 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 252, 264, 315, 343, 448 |
| Bse118I | RCCGGY | 1 cut(s) | 207 |
| BseAI | TCCGGA | 1 cut(s) | 522 |
| BseDI | CCNNGG | 3 cut(s) | 40, 251, 263 |
| BseGI | GGATG | 2 cut(s) | 280, 457 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 252, 264, 315, 343, 448 |
| BseRI | GAGGAG | 2 cut(s) | 384, 482 |
| BseX3I | CGGCCG | 1 cut(s) | 12 |
| Bsh1236I | CGCG | 2 cut(s) | 42, 243 |
| Bsh1285I | CGRYCG | 4 cut(s) | 15, 80, 292, 341 |
| BshFI | GGCC | 3 cut(s) | 14, 150, 185 |
| BshTI | ACCGGT | 1 cut(s) | 207 |
| BsiEI | CGRYCG | 4 cut(s) | 15, 80, 292, 341 |
| BsiHKCI | CYCGRG | 1 cut(s) | 464 |
| BsiSI | CCGG | 4 cut(s) | 80, 208, 437, 523 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 252, 264, 315, 343, 448 |
| BsmAI | GTCTC | 2 cut(s) | 341, 357 |
| BsmBI | CGTCTC | 2 cut(s) | 341, 357 |
| BsnI | GGCC | 3 cut(s) | 14, 150, 185 |
| BsoBI | CYCGRG | 1 cut(s) | 464 |
| Bsp13I | TCCGGA | 1 cut(s) | 522 |
| Bsp143I | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| Bsp19I | CCATGG | 1 cut(s) | 263 |
| BspANI | GGCC | 3 cut(s) | 14, 150, 185 |
| BspEI | TCCGGA | 1 cut(s) | 522 |
| BspFNI | CGCG | 2 cut(s) | 42, 243 |
| BspPI | GGATC | 4 cut(s) | 254, 330, 369, 427 |
| BsrFI | RCCGGY | 1 cut(s) | 207 |
| BssAI | RCCGGY | 1 cut(s) | 207 |
| BssECI | CCNNGG | 3 cut(s) | 40, 251, 263 |
| BssMI | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| BssNI | GRCGYC | 1 cut(s) | 350 |
| BssSI | CACGAG | 1 cut(s) | 495 |
| BssT1I | CCWWGG | 1 cut(s) | 263 |
| Bst2BI | CACGAG | 1 cut(s) | 495 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstACI | GRCGYC | 1 cut(s) | 350 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 2 cut(s) | 163, 369 |
| BstDSI | CCRYGG | 2 cut(s) | 40, 263 |
| BstF5I | GGATG | 2 cut(s) | 280, 457 |
| BstFNI | CGCG | 2 cut(s) | 42, 243 |
| BstHHI | GCGC | 1 cut(s) | 245 |
| BstKTI | GATC | 6 cut(s) | 262, 325, 341, 377, 418, 435 |
| BstMAI | GTCTC | 2 cut(s) | 341, 357 |
| BstMBI | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| BstMCI | CGRYCG | 4 cut(s) | 15, 80, 292, 341 |
| BstSCI | CCNGG | 1 cut(s) | 435 |
| BstUI | CGCG | 2 cut(s) | 42, 243 |
| BstV2I | GAAGAC | 2 cut(s) | 44, 292 |
| BstX2I | RGATCY | 1 cut(s) | 322 |
| BstYI | RGATCY | 1 cut(s) | 322 |
| BstZI | CGGCCG | 1 cut(s) | 12 |
| BsuRI | GGCC | 3 cut(s) | 14, 150, 185 |
| BtgI | CCRYGG | 2 cut(s) | 40, 263 |
| BtsCI | GGATG | 2 cut(s) | 280, 457 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| CciNI | GCGGCCGC | 1 cut(s) | 12 |
| CfoI | GCGC | 1 cut(s) | 245 |
| Cfr10I | RCCGGY | 1 cut(s) | 207 |
| Cfr13I | GGNCC | 2 cut(s) | 255, 439 |
| Cfr42I | CCGCGG | 1 cut(s) | 43 |
| CpoI | CGGWCCG | 1 cut(s) | 255 |
| CspAI | ACCGGT | 1 cut(s) | 207 |
| CspI | CGGWCCG | 1 cut(s) | 255 |
| CviAII | CATG | 1 cut(s) | 264 |
| CviJI | RGCY | 8 cut(s) | 14, 107, 143, 150, 173, 185, 203, 459 |
| CviKI_1 | RGCY | 8 cut(s) | 14, 107, 143, 150, 173, 185, 203, 459 |
| DdeI | CTNAG | 2 cut(s) | 163, 369 |
| DpnI | GATC | 6 cut(s) | 261, 324, 340, 376, 417, 434 |
| DpnII | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 296 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 296 |
| EaeI | YGGCCR | 3 cut(s) | 12, 148, 183 |
| EagI | CGGCCG | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| EciI | GGCGGA | 2 cut(s) | 321, 359 |
| EclXI | CGGCCG | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 1 cut(s) | 263 |
| Eco47I | GGWCC | 2 cut(s) | 255, 439 |
| Eco52I | CGGCCG | 1 cut(s) | 12 |
| Eco88I | CYCGRG | 1 cut(s) | 464 |
| EcoT14I | CCWWGG | 1 cut(s) | 263 |
| ErhI | CCWWGG | 1 cut(s) | 263 |
| Esp3I | CGTCTC | 2 cut(s) | 341, 357 |
| FaeI | CATG | 1 cut(s) | 267 |
| FaiI | YATR | 2 cut(s) | 36, 265 |
| FatI | CATG | 1 cut(s) | 263 |
| Fnu4HI | GCNGC | 5 cut(s) | 12, 15, 148, 186, 217 |
| FokI | GGATG | 2 cut(s) | 287, 464 |
| Fsp4HI | GCNGC | 5 cut(s) | 12, 15, 148, 186, 217 |
| GlaI | GCGC | 1 cut(s) | 244 |
| GluI | GCNGC | 5 cut(s) | 12, 15, 148, 186, 217 |
| GsuI | CTGGAG | 1 cut(s) | 117 |
| HaeIII | GGCC | 3 cut(s) | 14, 150, 185 |
| HapII | CCGG | 4 cut(s) | 80, 208, 437, 523 |
| HhaI | GCGC | 1 cut(s) | 245 |
| Hin1I | GRCGYC | 1 cut(s) | 350 |
| Hin1II | CATG | 1 cut(s) | 267 |
| Hin6I | GCGC | 1 cut(s) | 243 |
| HinP1I | GCGC | 1 cut(s) | 243 |
| HinfI | GANTC | 2 cut(s) | 197, 226 |
| HpaII | CCGG | 4 cut(s) | 80, 208, 437, 523 |
| Hpy188I | TCNGA | 1 cut(s) | 255 |
| Hpy188III | TCNNGA | 5 cut(s) | 96, 304, 464, 497, 523 |
| HpyAV | CCTTC | 2 cut(s) | 313, 414 |
| HpyCH4IV | ACGT | 2 cut(s) | 235, 350 |
| HpyCH4V | TGCA | 2 cut(s) | 112, 491 |
| HpyF3I | CTNAG | 2 cut(s) | 163, 369 |
| HpySE526I | ACGT | 2 cut(s) | 235, 350 |
| Hsp92I | GRCGYC | 1 cut(s) | 350 |
| Hsp92II | CATG | 1 cut(s) | 267 |
| HspAI | GCGC | 1 cut(s) | 243 |
| Kpn2I | TCCGGA | 1 cut(s) | 522 |
| KspI | CCGCGG | 1 cut(s) | 43 |
| Kzo9I | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| LpnPI | CCDG | 6 cut(s) | 81, 93, 157, 221, 392, 450 |
| LweI | GCATC | 1 cut(s) | 478 |
| MaeII | ACGT | 2 cut(s) | 235, 350 |
| MaeIII | GTNAC | 1 cut(s) | 381 |
| MalI | GATC | 6 cut(s) | 261, 324, 340, 376, 417, 434 |
| MboI | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| MboII | GAAGA | 6 cut(s) | 44, 113, 281, 292, 317, 399 |
| MfeI | CAATTG | 1 cut(s) | 422 |
| MflI | RGATCY | 1 cut(s) | 322 |
| MluCI | AATT | 3 cut(s) | 86, 114, 422 |
| MlyI | GAGTC | 2 cut(s) | 191, 220 |
| MnlI | CCTC | 9 cut(s) | 76, 184, 261, 265, 339, 405, 411, 460, 528 |
| MroI | TCCGGA | 1 cut(s) | 522 |
| MspA1I | CMGCKG | 1 cut(s) | 42 |
| MspI | CCGG | 4 cut(s) | 80, 208, 437, 523 |
| MspR9I | CCNGG | 1 cut(s) | 437 |
| MunI | CAATTG | 1 cut(s) | 422 |
| MvnI | CGCG | 2 cut(s) | 42, 243 |
| NciI | CCSGG | 1 cut(s) | 437 |
| NcoI | CCATGG | 1 cut(s) | 263 |
| NdeII | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| NlaIII | CATG | 1 cut(s) | 267 |
| NmeAIII | GCCGAG | 1 cut(s) | 179 |
| NotI | GCGGCCGC | 1 cut(s) | 12 |
| PaeR7I | CTCGAG | 1 cut(s) | 464 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 347 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 448 |
| PinAI | ACCGGT | 1 cut(s) | 207 |
| PkrI | GCNGC | 5 cut(s) | 13, 16, 149, 187, 218 |
| Ple19I | CGATCG | 1 cut(s) | 341 |
| PleI | GAGTC | 2 cut(s) | 191, 220 |
| PpsI | GAGTC | 2 cut(s) | 191, 220 |
| PspPI | GGNCC | 2 cut(s) | 255, 439 |
| PsuI | RGATCY | 1 cut(s) | 322 |
| PvuI | CGATCG | 1 cut(s) | 341 |
| Rsr2I | CGGWCCG | 1 cut(s) | 255 |
| RsrII | CGGWCCG | 1 cut(s) | 255 |
| SacII | CCGCGG | 1 cut(s) | 43 |
| SatI | GCNGC | 5 cut(s) | 12, 15, 148, 186, 217 |
| Sau3AI | GATC | 6 cut(s) | 259, 322, 338, 374, 415, 432 |
| Sau96I | GGNCC | 2 cut(s) | 255, 439 |
| SchI | GAGTC | 2 cut(s) | 191, 220 |
| ScrFI | CCNGG | 1 cut(s) | 437 |
| SetI | ASST | 4 cut(s) | 238, 353, 403, 461 |
| SfaNI | GCATC | 1 cut(s) | 478 |
| Sfr274I | CTCGAG | 1 cut(s) | 464 |
| Sfr303I | CCGCGG | 1 cut(s) | 43 |
| SgrBI | CCGCGG | 1 cut(s) | 43 |
| SinI | GGWCC | 2 cut(s) | 255, 439 |
| SlaI | CTCGAG | 1 cut(s) | 464 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| Sse9I | AATT | 3 cut(s) | 86, 114, 422 |
| StyD4I | CCNGG | 1 cut(s) | 435 |
| StyI | CCWWGG | 1 cut(s) | 263 |
| TaiI | ACGT | 2 cut(s) | 238, 353 |
| TaqI | TCGA | 2 cut(s) | 224, 465 |
| TaqII | GACCGA | 1 cut(s) | 272 |
| TasI | AATT | 3 cut(s) | 86, 114, 422 |
| TauI | GCSGC | 5 cut(s) | 14, 17, 150, 188, 219 |
| TspDTI | ATGAA | 3 cut(s) | 23, 107, 291 |
| TspGWI | ACGGA | 1 cut(s) | 114 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 448 |
| VpaK11BI | GGWCC | 2 cut(s) | 255, 439 |
| XapI | RAATTY | 1 cut(s) | 114 |
| XhoI | CTCGAG | 1 cut(s) | 464 |
| ZraI | GACGTC | 1 cut(s) | 351 |