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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 591 |
| Acc36I | ACCTGC | 1 cut(s) | 604 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 347 |
| AccBSI | CCGCTC | 1 cut(s) | 1150 |
| AccII | CGCG | 7 cut(s) | 8, 211, 244, 282, 581, 1217, 1428 |
| AclWI | GGATC | 5 cut(s) | 207, 542, 555, 713, 850 |
| AcoI | YGGCCR | 2 cut(s) | 501, 780 |
| AcuI | CTGAAG | 2 cut(s) | 696, 903 |
| AcyI | GRCGYC | 1 cut(s) | 45 |
| AfaI | GTAC | 2 cut(s) | 813, 1041 |
| AfeI | AGCGCT | 1 cut(s) | 714 |
| AgsI | TTSAA | 5 cut(s) | 179, 395, 1322, 1355, 1397 |
| AjnI | CCWGG | 2 cut(s) | 550, 1184 |
| AluBI | AGCT | 6 cut(s) | 260, 485, 1129, 1193, 1418, 1454 |
| AluI | AGCT | 6 cut(s) | 260, 485, 1129, 1193, 1418, 1454 |
| Alw21I | GWGCWC | 1 cut(s) | 262 |
| Alw26I | GTCTC | 3 cut(s) | 97, 1266, 1410 |
| AlwI | GGATC | 5 cut(s) | 207, 542, 555, 713, 850 |
| Aor51HI | AGCGCT | 1 cut(s) | 714 |
| AoxI | GGCC | 9 cut(s) | 501, 597, 780, 1197, 1210, 1344, 1389, 1434, 1510 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 113, 145 |
| AseI | ATTAAT | 1 cut(s) | 1155 |
| AspA2I | CCTAGG | 1 cut(s) | 1246 |
| AspLEI | GCGC | 7 cut(s) | 10, 244, 541, 592, 706, 715, 1219 |
| AspS9I | GGNCC | 9 cut(s) | 471, 598, 833, 1198, 1210, 1302, 1345, 1435, 1510 |
| AsuHPI | GGTGA | 6 cut(s) | 385, 521, 624, 854, 1105, 1286 |
| AvaII | GGWCC | 3 cut(s) | 471, 833, 1302 |
| AvrII | CCTAGG | 1 cut(s) | 1246 |
| AxyI | CCTNAGG | 1 cut(s) | 942 |
| BamHI | GGATCC | 1 cut(s) | 547 |
| BanII | GRGCYC | 4 cut(s) | 34, 250, 262, 387 |
| BauI | CACGAG | 1 cut(s) | 770 |
| BbsI | GAAGAC | 2 cut(s) | 374, 440 |
| Bbv12I | GWGCWC | 1 cut(s) | 262 |
| BbvCI | CCTCAGC | 1 cut(s) | 60 |
| BccI | CCATC | 4 cut(s) | 47, 349, 1066, 1103 |
| BceAI | ACGGC | 2 cut(s) | 32, 1359 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 113, 147 |
| BciT130I | CCWGG | 2 cut(s) | 552, 1186 |
| BclI | TGATCA | 1 cut(s) | 823 |
| BcoDI | GTCTC | 3 cut(s) | 97, 1266, 1410 |
| BfaI | CTAG | 5 cut(s) | 1017, 1247, 1265, 1385, 1467 |
| BfoI | RGCGCY | 2 cut(s) | 542, 716 |
| BfuAI | ACCTGC | 1 cut(s) | 604 |
| BlnI | CCTAGG | 1 cut(s) | 1246 |
| Bme1390I | CCNGG | 2 cut(s) | 552, 1186 |
| Bme18I | GGWCC | 3 cut(s) | 471, 833, 1302 |
| BmgT120I | GGNCC | 9 cut(s) | 471, 598, 833, 1198, 1210, 1302, 1345, 1435, 1510 |
| BmiI | GGNNCC | 8 cut(s) | 384, 549, 600, 915, 939, 1211, 1304, 1365 |
| BmrFI | CCNGG | 2 cut(s) | 552, 1186 |
| BmrI | ACTGGG | 1 cut(s) | 37 |
| BmsI | GCATC | 3 cut(s) | 143, 193, 577 |
| BmuI | ACTGGG | 1 cut(s) | 37 |
| BpiI | GAAGAC | 2 cut(s) | 374, 440 |
| BpmI | CTGGAG | 1 cut(s) | 276 |
| Bpu10I | CCTNAGC | 7 cut(s) | 60, 261, 700, 1005, 1146, 1194, 1419 |
| BpuEI | CTTGAG | 2 cut(s) | 18, 519 |
| BsaBI | GATNNNNATC | 2 cut(s) | 417, 761 |
| BsaHI | GRCGYC | 1 cut(s) | 45 |
| BsaI | GGTCTC | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 3 cut(s) | 48, 198, 1246 |
| BsaWI | WCCGGW | 2 cut(s) | 607, 910 |
| Bse118I | RCCGGY | 1 cut(s) | 238 |
| Bse1I | ACTGG | 4 cut(s) | 32, 573, 836, 1026 |
| Bse21I | CCTNAGG | 1 cut(s) | 942 |
| Bse8I | GATNNNNATC | 2 cut(s) | 417, 761 |
| BseBI | CCWGG | 2 cut(s) | 552, 1186 |
| BseDI | CCNNGG | 3 cut(s) | 48, 198, 1246 |
| BseGI | GGATG | 5 cut(s) | 58, 124, 208, 341, 1486 |
| BseJI | GATNNNNATC | 2 cut(s) | 417, 761 |
| BseMII | CTCAG | 9 cut(s) | 51, 125, 275, 675, 956, 996, 1092, 1137, 1208 |
| BseNI | ACTGG | 4 cut(s) | 32, 573, 836, 1026 |
| BseX3I | CGGCCG | 2 cut(s) | 501, 780 |
| BseYI | CCCAGC | 2 cut(s) | 216, 485 |
| BsgI | GTGCAG | 3 cut(s) | 632, 735, 1161 |
| Bsh1236I | CGCG | 7 cut(s) | 8, 211, 244, 282, 581, 1217, 1428 |
| Bsh1285I | CGRYCG | 3 cut(s) | 504, 687, 783 |
| BshFI | GGCC | 9 cut(s) | 503, 599, 782, 1199, 1212, 1346, 1391, 1436, 1512 |
| BsiEI | CGRYCG | 3 cut(s) | 504, 687, 783 |
| BsiHKAI | GWGCWC | 1 cut(s) | 262 |
| BsiSI | CCGG | 7 cut(s) | 167, 239, 608, 779, 831, 911, 917 |
| BsmAI | GTCTC | 3 cut(s) | 97, 1266, 1410 |
| BsnI | GGCC | 9 cut(s) | 503, 599, 782, 1199, 1212, 1346, 1391, 1436, 1512 |
| Bso31I | GGTCTC | 1 cut(s) | 97 |
| Bsp1286I | GDGCHC | 4 cut(s) | 34, 250, 262, 387 |
| Bsp143I | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| Bsp68I | TCGCGA | 1 cut(s) | 1428 |
| BspANI | GGCC | 9 cut(s) | 503, 599, 782, 1199, 1212, 1346, 1391, 1436, 1512 |
| BspCNI | CTCAG | 9 cut(s) | 52, 124, 274, 674, 955, 997, 1093, 1138, 1207 |
| BspFNI | CGCG | 7 cut(s) | 8, 211, 244, 282, 581, 1217, 1428 |
| BspLI | GGNNCC | 8 cut(s) | 384, 549, 600, 915, 939, 1211, 1304, 1365 |
| BspMI | ACCTGC | 1 cut(s) | 604 |
| BspPI | GGATC | 5 cut(s) | 207, 542, 555, 713, 850 |
| BspQI | GCTCTTC | 1 cut(s) | 502 |
| BspTNI | GGTCTC | 1 cut(s) | 97 |
| BsrBI | CCGCTC | 1 cut(s) | 1150 |
| BsrFI | RCCGGY | 1 cut(s) | 238 |
| BsrI | ACTGG | 4 cut(s) | 32, 573, 836, 1026 |
| BssAI | RCCGGY | 1 cut(s) | 238 |
| BssECI | CCNNGG | 3 cut(s) | 48, 198, 1246 |
| BssMI | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| BssNI | GRCGYC | 1 cut(s) | 45 |
| BssSI | CACGAG | 1 cut(s) | 770 |
| BssT1I | CCWWGG | 1 cut(s) | 1246 |
| Bst2BI | CACGAG | 1 cut(s) | 770 |
| Bst2UI | CCWGG | 2 cut(s) | 552, 1186 |
| Bst4CI | ACNGT | 4 cut(s) | 373, 446, 629, 796 |
| Bst6I | CTCTTC | 3 cut(s) | 81, 228, 502 |
| BstACI | GRCGYC | 1 cut(s) | 45 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 929 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 5 cut(s) | 58, 124, 208, 341, 1486 |
| BstFNI | CGCG | 7 cut(s) | 8, 211, 244, 282, 581, 1217, 1428 |
| BstH2I | RGCGCY | 2 cut(s) | 542, 716 |
| BstHHI | GCGC | 7 cut(s) | 10, 244, 541, 592, 706, 715, 1219 |
| BstKTI | GATC | 8 cut(s) | 19, 215, 550, 687, 721, 826, 858, 1166 |
| BstMAI | GTCTC | 3 cut(s) | 97, 1266, 1410 |
| BstMBI | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| BstMCI | CGRYCG | 3 cut(s) | 504, 687, 783 |
| BstNI | CCWGG | 2 cut(s) | 552, 1186 |
| BstSCI | CCNGG | 2 cut(s) | 550, 1184 |
| BstUI | CGCG | 7 cut(s) | 8, 211, 244, 282, 581, 1217, 1428 |
| BstV2I | GAAGAC | 2 cut(s) | 374, 440 |
| BstX2I | RGATCY | 1 cut(s) | 547 |
| BstYI | RGATCY | 1 cut(s) | 547 |
| BstZI | CGGCCG | 2 cut(s) | 501, 780 |
| Bsu36I | CCTNAGG | 1 cut(s) | 942 |
| BsuRI | GGCC | 9 cut(s) | 503, 599, 782, 1199, 1212, 1346, 1391, 1436, 1512 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtgZI | GCGATG | 3 cut(s) | 600, 784, 1415 |
| BtsCI | GGATG | 5 cut(s) | 58, 124, 208, 341, 1486 |
| BtsI | GCAGTG | 1 cut(s) | 858 |
| BtsIMutI | CAGTG | 2 cut(s) | 858, 1098 |
| BtuMI | TCGCGA | 1 cut(s) | 1428 |
| BveI | ACCTGC | 1 cut(s) | 604 |
| CfoI | GCGC | 7 cut(s) | 10, 244, 541, 592, 706, 715, 1219 |
| Cfr10I | RCCGGY | 1 cut(s) | 238 |
| Cfr13I | GGNCC | 9 cut(s) | 471, 598, 833, 1198, 1210, 1302, 1345, 1435, 1510 |
| CseI | GACGC | 5 cut(s) | 53, 674, 857, 1238, 1472 |
| Csp6I | GTAC | 2 cut(s) | 812, 1040 |
| CviAII | CATG | 3 cut(s) | 827, 953, 1505 |
| CviQI | GTAC | 2 cut(s) | 812, 1040 |
| DpnI | GATC | 8 cut(s) | 18, 214, 549, 686, 720, 825, 857, 1165 |
| DpnII | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| EaeI | YGGCCR | 2 cut(s) | 501, 780 |
| EagI | CGGCCG | 2 cut(s) | 501, 780 |
| Eam1104I | CTCTTC | 3 cut(s) | 81, 228, 502 |
| EarI | CTCTTC | 3 cut(s) | 81, 228, 502 |
| Ecl136II | GAGCTC | 1 cut(s) | 260 |
| EclXI | CGGCCG | 2 cut(s) | 501, 780 |
| Eco130I | CCWWGG | 1 cut(s) | 1246 |
| Eco24I | GRGCYC | 4 cut(s) | 34, 250, 262, 387 |
| Eco31I | GGTCTC | 1 cut(s) | 97 |
| Eco47I | GGWCC | 3 cut(s) | 471, 833, 1302 |
| Eco47III | AGCGCT | 1 cut(s) | 714 |
| Eco52I | CGGCCG | 2 cut(s) | 501, 780 |
| Eco53kI | GAGCTC | 1 cut(s) | 260 |
| Eco57I | CTGAAG | 2 cut(s) | 696, 903 |
| Eco81I | CCTNAGG | 1 cut(s) | 942 |
| EcoICRI | GAGCTC | 1 cut(s) | 260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1210 |
| EcoRII | CCWGG | 2 cut(s) | 550, 1184 |
| EcoT14I | CCWWGG | 1 cut(s) | 1246 |
| EcoT38I | GRGCYC | 4 cut(s) | 34, 250, 262, 387 |
| ErhI | CCWWGG | 1 cut(s) | 1246 |
| FaeI | CATG | 3 cut(s) | 830, 956, 1508 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 912, 944, 1352, 1384 |
| FatI | CATG | 3 cut(s) | 826, 952, 1504 |
| FauI | CCCGC | 3 cut(s) | 108, 880, 1501 |
| FbaI | TGATCA | 1 cut(s) | 823 |
| FokI | GGATG | 5 cut(s) | 65, 131, 215, 328, 1493 |
| FriOI | GRGCYC | 4 cut(s) | 34, 250, 262, 387 |
| FspAI | RTGCGCAY | 1 cut(s) | 591 |
| FspBI | CTAG | 5 cut(s) | 1017, 1247, 1265, 1385, 1467 |
| FspI | TGCGCA | 1 cut(s) | 591 |
| GlaI | GCGC | 7 cut(s) | 9, 243, 540, 591, 705, 714, 1218 |
| GsaI | CCCAGC | 2 cut(s) | 220, 489 |
| GsuI | CTGGAG | 1 cut(s) | 276 |
| HaeII | RGCGCY | 2 cut(s) | 542, 716 |
| HaeIII | GGCC | 9 cut(s) | 503, 599, 782, 1199, 1212, 1346, 1391, 1436, 1512 |
| HapII | CCGG | 7 cut(s) | 167, 239, 608, 779, 831, 911, 917 |
| HgaI | GACGC | 5 cut(s) | 53, 674, 857, 1238, 1472 |
| HhaI | GCGC | 7 cut(s) | 10, 244, 541, 592, 706, 715, 1219 |
| Hin1I | GRCGYC | 1 cut(s) | 45 |
| Hin1II | CATG | 3 cut(s) | 830, 956, 1508 |
| Hin6I | GCGC | 7 cut(s) | 8, 242, 539, 590, 704, 713, 1217 |
| HinP1I | GCGC | 7 cut(s) | 8, 242, 539, 590, 704, 713, 1217 |
| HinfI | GANTC | 4 cut(s) | 109, 398, 532, 1291 |
| HpaII | CCGG | 7 cut(s) | 167, 239, 608, 779, 831, 911, 917 |
| HphI | GGTGA | 6 cut(s) | 385, 521, 624, 854, 1105, 1286 |
| Hpy166II | GTNNAC | 3 cut(s) | 632, 1040, 1113 |
| Hpy188I | TCNGA | 4 cut(s) | 199, 409, 664, 1061 |
| Hpy8I | GTNNAC | 3 cut(s) | 632, 1040, 1113 |
| Hpy99I | CGWCG | 3 cut(s) | 468, 471, 1466 |
| HpyAV | CCTTC | 7 cut(s) | 59, 485, 506, 641, 887, 1023, 1151 |
| HpyCH4III | ACNGT | 4 cut(s) | 373, 446, 629, 796 |
| HpyCH4V | TGCA | 5 cut(s) | 134, 529, 613, 752, 1178 |
| Hsp92I | GRCGYC | 1 cut(s) | 45 |
| Hsp92II | CATG | 3 cut(s) | 830, 956, 1508 |
| HspAI | GCGC | 7 cut(s) | 8, 242, 539, 590, 704, 713, 1217 |
| Ksp22I | TGATCA | 1 cut(s) | 823 |
| Kzo9I | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| LguI | GCTCTTC | 1 cut(s) | 502 |
| LmnI | GCTCC | 6 cut(s) | 382, 883, 913, 937, 1000, 1447 |
| LweI | GCATC | 3 cut(s) | 143, 193, 577 |
| MaeI | CTAG | 5 cut(s) | 1017, 1247, 1265, 1385, 1467 |
| MaeIII | GTNAC | 4 cut(s) | 306, 575, 817, 1339 |
| MalI | GATC | 8 cut(s) | 18, 214, 549, 686, 720, 825, 857, 1165 |
| MbiI | CCGCTC | 1 cut(s) | 1150 |
| MboI | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| MfeI | CAATTG | 2 cut(s) | 100, 1328 |
| MflI | RGATCY | 1 cut(s) | 547 |
| MhlI | GDGCHC | 4 cut(s) | 34, 250, 262, 387 |
| MluCI | AATT | 6 cut(s) | 100, 433, 603, 638, 723, 1328 |
| MlyI | GAGTC | 2 cut(s) | 103, 526 |
| MseI | TTAA | 2 cut(s) | 1155, 1373 |
| MspA1I | CMGCKG | 5 cut(s) | 115, 347, 506, 1083, 1337 |
| MspI | CCGG | 7 cut(s) | 167, 239, 608, 779, 831, 911, 917 |
| MspR9I | CCNGG | 2 cut(s) | 552, 1186 |
| MunI | CAATTG | 2 cut(s) | 100, 1328 |
| MvaI | CCWGG | 2 cut(s) | 552, 1186 |
| MvnI | CGCG | 7 cut(s) | 8, 211, 244, 282, 581, 1217, 1428 |
| NdeII | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| NlaIII | CATG | 3 cut(s) | 830, 956, 1508 |
| NlaIV | GGNNCC | 8 cut(s) | 384, 549, 600, 915, 939, 1211, 1304, 1365 |
| NmeAIII | GCCGAG | 1 cut(s) | 281 |
| NmuCI | GTSAC | 2 cut(s) | 306, 1339 |
| NruI | TCGCGA | 1 cut(s) | 1428 |
| NsbI | TGCGCA | 1 cut(s) | 591 |
| PciSI | GCTCTTC | 1 cut(s) | 502 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 279, 1236 |
| PfeI | GAWTC | 2 cut(s) | 398, 1291 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 347 |
| Ple19I | CGATCG | 1 cut(s) | 687 |
| PleI | GAGTC | 2 cut(s) | 103, 526 |
| PpsI | GAGTC | 2 cut(s) | 103, 526 |
| PshBI | ATTAAT | 1 cut(s) | 1155 |
| Psp124BI | GAGCTC | 1 cut(s) | 262 |
| Psp6I | CCWGG | 2 cut(s) | 550, 1184 |
| PspFI | CCCAGC | 2 cut(s) | 216, 485 |
| PspGI | CCWGG | 2 cut(s) | 550, 1184 |
| PspN4I | GGNNCC | 8 cut(s) | 384, 549, 600, 915, 939, 1211, 1304, 1365 |
| PspPI | GGNCC | 9 cut(s) | 471, 598, 833, 1198, 1210, 1302, 1345, 1435, 1510 |
| PsuI | RGATCY | 1 cut(s) | 547 |
| PvuI | CGATCG | 1 cut(s) | 687 |
| RruI | TCGCGA | 1 cut(s) | 1428 |
| RsaI | GTAC | 2 cut(s) | 813, 1041 |
| RsaNI | GTAC | 2 cut(s) | 812, 1040 |
| SacI | GAGCTC | 1 cut(s) | 262 |
| SapI | GCTCTTC | 1 cut(s) | 502 |
| SaqAI | TTAA | 2 cut(s) | 1155, 1373 |
| Sau3AI | GATC | 8 cut(s) | 16, 212, 547, 684, 718, 823, 855, 1163 |
| Sau96I | GGNCC | 9 cut(s) | 471, 598, 833, 1198, 1210, 1302, 1345, 1435, 1510 |
| SchI | GAGTC | 2 cut(s) | 103, 526 |
| ScrFI | CCNGG | 2 cut(s) | 552, 1186 |
| SduI | GDGCHC | 4 cut(s) | 34, 250, 262, 387 |
| SfaNI | GCATC | 3 cut(s) | 143, 193, 577 |
| SinI | GGWCC | 3 cut(s) | 471, 833, 1302 |
| SmlI | CTYRAG | 2 cut(s) | 33, 534 |
| SmoI | CTYRAG | 2 cut(s) | 33, 534 |
| Sse9I | AATT | 6 cut(s) | 100, 433, 603, 638, 723, 1328 |
| SspMI | CTAG | 5 cut(s) | 1017, 1247, 1265, 1385, 1467 |
| SstI | GAGCTC | 1 cut(s) | 262 |
| StyD4I | CCNGG | 2 cut(s) | 550, 1184 |
| StyI | CCWWGG | 1 cut(s) | 1246 |
| TaaI | ACNGT | 4 cut(s) | 373, 446, 629, 796 |
| TaqI | TCGA | 3 cut(s) | 906, 1044, 1239 |
| TaqII | GACCGA | 2 cut(s) | 85, 459 |
| TasI | AATT | 6 cut(s) | 100, 433, 603, 638, 723, 1328 |
| TatI | WGTACW | 1 cut(s) | 1039 |
| TauI | GCSGC | 4 cut(s) | 506, 785, 965, 1391 |
| TfiI | GAWTC | 2 cut(s) | 398, 1291 |
| Tru1I | TTAA | 2 cut(s) | 1155, 1373 |
| Tru9I | TTAA | 2 cut(s) | 1155, 1373 |
| TscAI | CASTG | 2 cut(s) | 858, 1105 |
| TseFI | GTSAC | 2 cut(s) | 306, 1339 |
| Tsp45I | GTSAC | 2 cut(s) | 306, 1339 |
| TspDTI | ATGAA | 4 cut(s) | 87, 747, 1173, 1497 |
| TspGWI | ACGGA | 1 cut(s) | 320 |
| TspRI | CASTG | 2 cut(s) | 858, 1105 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 347 |
| VpaK11BI | GGWCC | 3 cut(s) | 471, 833, 1302 |
| VspI | ATTAAT | 1 cut(s) | 1155 |
| XbaI | TCTAGA | 1 cut(s) | 1016 |
| XmaJI | CCTAGG | 1 cut(s) | 1246 |
| XspI | CTAG | 5 cut(s) | 1017, 1247, 1265, 1385, 1467 |