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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 117, 312 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 114 |
| AccII | CGCG | 6 cut(s) | 7, 123, 199, 204, 363, 384 |
| AciI | CCGC | 5 cut(s) | 7, 121, 197, 202, 363 |
| AcsI | RAATTY | 1 cut(s) | 42 |
| AcyI | GRCGYC | 1 cut(s) | 225 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 99, 100, 114, 262 |
| AgsI | TTSAA | 1 cut(s) | 302 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 97, 129 |
| AluBI | AGCT | 1 cut(s) | 370 |
| AluI | AGCT | 1 cut(s) | 370 |
| Alw26I | GTCTC | 2 cut(s) | 144, 200 |
| Ama87I | CYCGRG | 1 cut(s) | 216 |
| AoxI | GGCC | 4 cut(s) | 193, 219, 248, 264 |
| ApaI | GGGCCC | 1 cut(s) | 197 |
| ApoI | RAATTY | 1 cut(s) | 42 |
| AspLEI | GCGC | 3 cut(s) | 125, 201, 363 |
| AspS9I | GGNCC | 5 cut(s) | 188, 193, 194, 219, 265 |
| AsuC2I | CCSGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| AvaI | CYCGRG | 1 cut(s) | 216 |
| AvaII | GGWCC | 1 cut(s) | 188 |
| BaeGI | GKGCMC | 3 cut(s) | 197, 317, 343 |
| BanI | GGYRCC | 2 cut(s) | 117, 312 |
| BanII | GRGCYC | 1 cut(s) | 197 |
| BauI | CACGAG | 1 cut(s) | 396 |
| BccI | CCATC | 4 cut(s) | 186, 236, 243, 356 |
| BcnI | CCSGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| BcoDI | GTCTC | 2 cut(s) | 144, 200 |
| BfaI | CTAG | 3 cut(s) | 36, 344, 412 |
| BglII | AGATCT | 1 cut(s) | 14 |
| BisI | GCNGC | 3 cut(s) | 121, 202, 364 |
| BlsI | GCNGC | 3 cut(s) | 122, 203, 365 |
| Bme1390I | CCNGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| Bme18I | GGWCC | 1 cut(s) | 188 |
| BmeT110I | CYCGRG | 1 cut(s) | 216 |
| BmgT120I | GGNCC | 5 cut(s) | 188, 193, 194, 219, 265 |
| BmiI | GGNNCC | 5 cut(s) | 106, 119, 170, 195, 314 |
| BmrFI | CCNGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| BpuMI | CCSGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| BsaBI | GATNNNNATC | 1 cut(s) | 56 |
| BsaHI | GRCGYC | 1 cut(s) | 225 |
| BsaI | GGTCTC | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 1 cut(s) | 216 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 143, 173, 215, 245 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 99, 100, 114, 262 |
| Bse1I | ACTGG | 1 cut(s) | 273 |
| Bse8I | GATNNNNATC | 1 cut(s) | 56 |
| BseDI | CCNNGG | 1 cut(s) | 216 |
| BseGI | GGATG | 1 cut(s) | 348 |
| BseJI | GATNNNNATC | 1 cut(s) | 56 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 99, 100, 114, 262 |
| BseNI | ACTGG | 1 cut(s) | 273 |
| BseRI | GAGGAG | 1 cut(s) | 151 |
| BseSI | GKGCMC | 3 cut(s) | 197, 317, 343 |
| Bsh1236I | CGCG | 6 cut(s) | 7, 123, 199, 204, 363, 384 |
| Bsh1285I | CGRYCG | 1 cut(s) | 308 |
| BshFI | GGCC | 4 cut(s) | 195, 221, 250, 266 |
| BshNI | GGYRCC | 2 cut(s) | 117, 312 |
| BsiEI | CGRYCG | 1 cut(s) | 308 |
| BsiHKCI | CYCGRG | 1 cut(s) | 216 |
| BsiSI | CCGG | 5 cut(s) | 165, 191, 217, 317, 376 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 99, 100, 114, 262 |
| BsmAI | GTCTC | 2 cut(s) | 144, 200 |
| BsmI | GAATGC | 1 cut(s) | 125 |
| BsnI | GGCC | 4 cut(s) | 195, 221, 250, 266 |
| Bso31I | GGTCTC | 1 cut(s) | 144 |
| BsoBI | CYCGRG | 1 cut(s) | 216 |
| Bsp120I | GGGCCC | 1 cut(s) | 193 |
| Bsp1286I | GDGCHC | 3 cut(s) | 197, 317, 343 |
| Bsp143I | GATC | 2 cut(s) | 14, 24 |
| Bsp68I | TCGCGA | 1 cut(s) | 384 |
| BspACI | CCGC | 5 cut(s) | 7, 121, 197, 202, 363 |
| BspANI | GGCC | 4 cut(s) | 195, 221, 250, 266 |
| BspFNI | CGCG | 6 cut(s) | 7, 123, 199, 204, 363, 384 |
| BspLI | GGNNCC | 5 cut(s) | 106, 119, 170, 195, 314 |
| BspT107I | GGYRCC | 2 cut(s) | 117, 312 |
| BspTNI | GGTCTC | 1 cut(s) | 144 |
| BsrI | ACTGG | 1 cut(s) | 273 |
| BssECI | CCNNGG | 1 cut(s) | 216 |
| BssMI | GATC | 2 cut(s) | 14, 24 |
| BssNI | GRCGYC | 1 cut(s) | 225 |
| BssSI | CACGAG | 1 cut(s) | 396 |
| Bst2BI | CACGAG | 1 cut(s) | 396 |
| Bst4CI | ACNGT | 1 cut(s) | 306 |
| BstACI | GRCGYC | 1 cut(s) | 225 |
| BstC8I | GCNNGC | 3 cut(s) | 197, 368, 409 |
| BstF5I | GGATG | 1 cut(s) | 348 |
| BstFNI | CGCG | 6 cut(s) | 7, 123, 199, 204, 363, 384 |
| BstHHI | GCGC | 3 cut(s) | 125, 201, 363 |
| BstKTI | GATC | 2 cut(s) | 17, 27 |
| BstMAI | GTCTC | 2 cut(s) | 144, 200 |
| BstMBI | GATC | 2 cut(s) | 14, 24 |
| BstMCI | CGRYCG | 1 cut(s) | 308 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 201, 367 |
| BstSCI | CCNGG | 6 cut(s) | 164, 190, 215, 216, 315, 374 |
| BstSLI | GKGCMC | 3 cut(s) | 197, 317, 343 |
| BstUI | CGCG | 6 cut(s) | 7, 123, 199, 204, 363, 384 |
| BstX2I | RGATCY | 1 cut(s) | 14 |
| BstYI | RGATCY | 1 cut(s) | 14 |
| BsuRI | GGCC | 4 cut(s) | 195, 221, 250, 266 |
| BtsCI | GGATG | 1 cut(s) | 348 |
| BtuMI | TCGCGA | 1 cut(s) | 384 |
| Cac8I | GCNNGC | 3 cut(s) | 197, 368, 409 |
| CfoI | GCGC | 3 cut(s) | 125, 201, 363 |
| Cfr13I | GGNCC | 5 cut(s) | 188, 193, 194, 219, 265 |
| Cfr9I | CCCGGG | 1 cut(s) | 216 |
| CpoI | CGGWCCG | 1 cut(s) | 188 |
| CseI | GACGC | 1 cut(s) | 233 |
| CspI | CGGWCCG | 1 cut(s) | 188 |
| CviAII | CATG | 1 cut(s) | 182 |
| CviJI | RGCY | 7 cut(s) | 195, 221, 250, 266, 347, 370, 407 |
| CviKI_1 | RGCY | 7 cut(s) | 195, 221, 250, 266, 347, 370, 407 |
| DpnI | GATC | 2 cut(s) | 16, 26 |
| DpnII | GATC | 2 cut(s) | 14, 24 |
| Eco24I | GRGCYC | 1 cut(s) | 197 |
| Eco31I | GGTCTC | 1 cut(s) | 144 |
| Eco47I | GGWCC | 1 cut(s) | 188 |
| Eco88I | CYCGRG | 1 cut(s) | 216 |
| EcoRI | GAATTC | 1 cut(s) | 42 |
| EcoT38I | GRGCYC | 1 cut(s) | 197 |
| FaeI | CATG | 1 cut(s) | 185 |
| FaiI | YATR | 2 cut(s) | 183, 247 |
| FatI | CATG | 1 cut(s) | 181 |
| FauI | CCCGC | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 3 cut(s) | 121, 202, 364 |
| FokI | GGATG | 1 cut(s) | 335 |
| FriOI | GRGCYC | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 3 cut(s) | 121, 202, 364 |
| FspBI | CTAG | 3 cut(s) | 36, 344, 412 |
| GlaI | GCGC | 3 cut(s) | 124, 200, 362 |
| GluI | GCNGC | 3 cut(s) | 121, 202, 364 |
| HaeIII | GGCC | 4 cut(s) | 195, 221, 250, 266 |
| HapII | CCGG | 5 cut(s) | 165, 191, 217, 317, 376 |
| HgaI | GACGC | 1 cut(s) | 233 |
| HhaI | GCGC | 3 cut(s) | 125, 201, 363 |
| Hin1I | GRCGYC | 1 cut(s) | 225 |
| Hin1II | CATG | 1 cut(s) | 185 |
| Hin6I | GCGC | 3 cut(s) | 123, 199, 361 |
| HinP1I | GCGC | 3 cut(s) | 123, 199, 361 |
| HinfI | GANTC | 3 cut(s) | 208, 287, 320 |
| HpaII | CCGG | 5 cut(s) | 165, 191, 217, 317, 376 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 188 |
| Hpy188III | TCNNGA | 3 cut(s) | 147, 172, 383 |
| Hpy99I | CGWCG | 2 cut(s) | 227, 265 |
| HpyAV | CCTTC | 3 cut(s) | 251, 277, 380 |
| HpyCH4III | ACNGT | 1 cut(s) | 306 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 201, 367 |
| Hsp92I | GRCGYC | 1 cut(s) | 225 |
| Hsp92II | CATG | 1 cut(s) | 185 |
| HspAI | GCGC | 3 cut(s) | 123, 199, 361 |
| Kzo9I | GATC | 2 cut(s) | 14, 24 |
| LpnPI | CCDG | 8 cut(s) | 71, 160, 178, 204, 230, 286, 330, 389 |
| MaeI | CTAG | 3 cut(s) | 36, 344, 412 |
| MalI | GATC | 2 cut(s) | 16, 26 |
| MboI | GATC | 2 cut(s) | 14, 24 |
| MboII | GAAGA | 3 cut(s) | 61, 80, 83 |
| MflI | RGATCY | 1 cut(s) | 14 |
| MhlI | GDGCHC | 3 cut(s) | 197, 317, 343 |
| MluCI | AATT | 2 cut(s) | 42, 334 |
| MlyI | GAGTC | 2 cut(s) | 202, 281 |
| MmeI | TCCRAC | 1 cut(s) | 166 |
| MnlI | CCTC | 2 cut(s) | 172, 362 |
| MspI | CCGG | 5 cut(s) | 165, 191, 217, 317, 376 |
| MspR9I | CCNGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| Mva1269I | GAATGC | 1 cut(s) | 125 |
| MvnI | CGCG | 6 cut(s) | 7, 123, 199, 204, 363, 384 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 201, 367 |
| NciI | CCSGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| NdeII | GATC | 2 cut(s) | 14, 24 |
| NlaIII | CATG | 1 cut(s) | 185 |
| NlaIV | GGNNCC | 5 cut(s) | 106, 119, 170, 195, 314 |
| NruI | TCGCGA | 1 cut(s) | 384 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 388 |
| PctI | GAATGC | 1 cut(s) | 125 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 114 |
| PkrI | GCNGC | 3 cut(s) | 122, 203, 365 |
| PleI | GAGTC | 2 cut(s) | 202, 281 |
| PpsI | GAGTC | 2 cut(s) | 202, 281 |
| PspN4I | GGNNCC | 5 cut(s) | 106, 119, 170, 195, 314 |
| PspOMI | GGGCCC | 1 cut(s) | 193 |
| PspPI | GGNCC | 5 cut(s) | 188, 193, 194, 219, 265 |
| PsuI | RGATCY | 1 cut(s) | 14 |
| RruI | TCGCGA | 1 cut(s) | 384 |
| Rsr2I | CGGWCCG | 1 cut(s) | 188 |
| RsrII | CGGWCCG | 1 cut(s) | 188 |
| SatI | GCNGC | 3 cut(s) | 121, 202, 364 |
| Sau3AI | GATC | 2 cut(s) | 14, 24 |
| Sau96I | GGNCC | 5 cut(s) | 188, 193, 194, 219, 265 |
| SchI | GAGTC | 2 cut(s) | 202, 281 |
| ScrFI | CCNGG | 6 cut(s) | 166, 192, 217, 218, 317, 376 |
| SduI | GDGCHC | 3 cut(s) | 197, 317, 343 |
| SetI | ASST | 2 cut(s) | 90, 372 |
| SinI | GGWCC | 1 cut(s) | 188 |
| SmaI | CCCGGG | 1 cut(s) | 218 |
| Sse9I | AATT | 2 cut(s) | 42, 334 |
| SsiI | CCGC | 5 cut(s) | 7, 121, 197, 202, 363 |
| SspMI | CTAG | 3 cut(s) | 36, 344, 412 |
| StyD4I | CCNGG | 6 cut(s) | 164, 190, 215, 216, 315, 374 |
| TaaI | ACNGT | 1 cut(s) | 306 |
| TaqI | TCGA | 3 cut(s) | 40, 60, 326 |
| TasI | AATT | 2 cut(s) | 42, 334 |
| TauI | GCSGC | 3 cut(s) | 123, 204, 366 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 2 cut(s) | 96, 118 |
| TspMI | CCCGGG | 1 cut(s) | 216 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 114 |
| VpaK11BI | GGWCC | 1 cut(s) | 188 |
| XapI | RAATTY | 1 cut(s) | 42 |
| XmaI | CCCGGG | 1 cut(s) | 216 |
| XspI | CTAG | 3 cut(s) | 36, 344, 412 |