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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 414 |
| Acc16I | TGCGCA | 1 cut(s) | 573 |
| Acc36I | ACCTGC | 3 cut(s) | 58, 574, 678 |
| Acc65I | GGTACC | 1 cut(s) | 1091 |
| AccB1I | GGYRCC | 1 cut(s) | 1091 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 748 |
| AccBSI | CCGCTC | 1 cut(s) | 101 |
| AccI | GTMKAC | 2 cut(s) | 924, 945 |
| AccIII | TCCGGA | 1 cut(s) | 22 |
| AclWI | GGATC | 3 cut(s) | 74, 179, 683 |
| AcoI | YGGCCR | 1 cut(s) | 276 |
| AcuI | CTGAAG | 2 cut(s) | 698, 855 |
| AfaI | GTAC | 4 cut(s) | 13, 30, 54, 1093 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 89, 94, 167, 203, 274, 748, 919, 1054, 1055 |
| AgsI | TTSAA | 3 cut(s) | 466, 590, 707 |
| AjnI | CCWGG | 2 cut(s) | 370, 982 |
| AleI | CACNNNNGTG | 1 cut(s) | 600 |
| AluBI | AGCT | 9 cut(s) | 136, 209, 452, 523, 578, 593, 653, 712, 787 |
| AluI | AGCT | 9 cut(s) | 136, 209, 452, 523, 578, 593, 653, 712, 787 |
| Alw21I | GWGCWC | 1 cut(s) | 454 |
| Alw26I | GTCTC | 1 cut(s) | 871 |
| AlwI | GGATC | 3 cut(s) | 74, 179, 683 |
| Ama87I | CYCGRG | 1 cut(s) | 317 |
| Aor13HI | TCCGGA | 1 cut(s) | 22 |
| AoxI | GGCC | 7 cut(s) | 96, 240, 276, 717, 738, 910, 1045 |
| ApeKI | GCWGC | 3 cut(s) | 400, 403, 803 |
| Asp718I | GGTACC | 1 cut(s) | 1091 |
| AspLEI | GCGC | 7 cut(s) | 67, 440, 442, 544, 574, 830, 1011 |
| AspS9I | GGNCC | 8 cut(s) | 241, 416, 667, 696, 718, 739, 1020, 1046 |
| AsuC2I | CCSGG | 3 cut(s) | 90, 953, 1036 |
| AsuHPI | GGTGA | 1 cut(s) | 766 |
| AvaI | CYCGRG | 1 cut(s) | 317 |
| AvaII | GGWCC | 4 cut(s) | 416, 667, 696, 1020 |
| AxyI | CCTNAGG | 1 cut(s) | 36 |
| BanI | GGYRCC | 1 cut(s) | 1091 |
| BanII | GRGCYC | 2 cut(s) | 198, 454 |
| Bbv12I | GWGCWC | 1 cut(s) | 454 |
| BbvCI | CCTCAGC | 2 cut(s) | 165, 783 |
| BbvI | GCAGC | 3 cut(s) | 387, 415, 815 |
| BccI | CCATC | 1 cut(s) | 254 |
| BciT130I | CCWGG | 2 cut(s) | 372, 984 |
| BcnI | CCSGG | 3 cut(s) | 90, 953, 1036 |
| BcoDI | GTCTC | 1 cut(s) | 871 |
| BfaI | CTAG | 2 cut(s) | 579, 788 |
| BfmI | CTRYAG | 1 cut(s) | 401 |
| BfuAI | ACCTGC | 3 cut(s) | 58, 574, 678 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 812 |
| Bme1390I | CCNGG | 5 cut(s) | 90, 372, 953, 984, 1036 |
| Bme18I | GGWCC | 4 cut(s) | 416, 667, 696, 1020 |
| BmeT110I | CYCGRG | 1 cut(s) | 317 |
| BmgT120I | GGNCC | 8 cut(s) | 241, 416, 667, 696, 718, 739, 1020, 1046 |
| BmrFI | CCNGG | 5 cut(s) | 90, 372, 953, 984, 1036 |
| BmrI | ACTGGG | 1 cut(s) | 736 |
| BmsI | GCATC | 1 cut(s) | 635 |
| BmuI | ACTGGG | 1 cut(s) | 736 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 642, 674, 995, 1027 |
| BpmI | CTGGAG | 1 cut(s) | 354 |
| Bpu10I | CCTNAGC | 4 cut(s) | 61, 165, 783, 799 |
| BpuEI | CTTGAG | 4 cut(s) | 87, 243, 438, 788 |
| BpuMI | CCSGG | 3 cut(s) | 90, 953, 1036 |
| BsaJI | CCNNGG | 6 cut(s) | 88, 273, 939, 952, 982, 1049 |
| BsaWI | WCCGGW | 3 cut(s) | 22, 226, 1119 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 519, 549, 1012, 1042 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 89, 94, 167, 203, 274, 748, 919, 1054, 1055 |
| Bse1I | ACTGG | 2 cut(s) | 140, 742 |
| Bse21I | CCTNAGG | 1 cut(s) | 36 |
| BseAI | TCCGGA | 1 cut(s) | 22 |
| BseBI | CCWGG | 2 cut(s) | 372, 984 |
| BseDI | CCNNGG | 6 cut(s) | 88, 273, 939, 952, 982, 1049 |
| BseGI | GGATG | 2 cut(s) | 31, 626 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 89, 94, 167, 203, 274, 748, 919, 1054, 1055 |
| BseMII | CTCAG | 7 cut(s) | 27, 156, 183, 486, 492, 797, 846 |
| BseNI | ACTGG | 2 cut(s) | 140, 742 |
| BsePI | GCGCGC | 1 cut(s) | 438 |
| BseRI | GAGGAG | 3 cut(s) | 53, 357, 900 |
| BseX3I | CGGCCG | 1 cut(s) | 276 |
| BseXI | GCAGC | 3 cut(s) | 387, 415, 815 |
| BseYI | CCCAGC | 1 cut(s) | 209 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| Bsh1285I | CGRYCG | 2 cut(s) | 279, 564 |
| BshFI | GGCC | 7 cut(s) | 98, 242, 278, 719, 740, 912, 1047 |
| BshNI | GGYRCC | 1 cut(s) | 1091 |
| BsiEI | CGRYCG | 2 cut(s) | 279, 564 |
| BsiHKAI | GWGCWC | 1 cut(s) | 454 |
| BsiHKCI | CYCGRG | 1 cut(s) | 317 |
| BsiSI | CCGG | 6 cut(s) | 23, 90, 227, 952, 1036, 1120 |
| BslFI | GGGAC | 3 cut(s) | 226, 407, 680 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 89, 94, 167, 203, 274, 748, 919, 1054, 1055 |
| BsmAI | GTCTC | 1 cut(s) | 871 |
| BsmBI | CGTCTC | 1 cut(s) | 871 |
| BsmFI | GGGAC | 3 cut(s) | 226, 407, 680 |
| BsnI | GGCC | 7 cut(s) | 98, 242, 278, 719, 740, 912, 1047 |
| BsoBI | CYCGRG | 1 cut(s) | 317 |
| Bsp1286I | GDGCHC | 2 cut(s) | 198, 454 |
| Bsp13I | TCCGGA | 1 cut(s) | 22 |
| Bsp1407I | TGTACA | 1 cut(s) | 52 |
| Bsp143I | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| BspANI | GGCC | 7 cut(s) | 98, 242, 278, 719, 740, 912, 1047 |
| BspCNI | CTCAG | 7 cut(s) | 28, 157, 184, 487, 493, 796, 847 |
| BspEI | TCCGGA | 1 cut(s) | 22 |
| BspMAI | CTGCAG | 1 cut(s) | 405 |
| BspMI | ACCTGC | 3 cut(s) | 58, 574, 678 |
| BspPI | GGATC | 3 cut(s) | 74, 179, 683 |
| BspT107I | GGYRCC | 1 cut(s) | 1091 |
| BsrBI | CCGCTC | 1 cut(s) | 101 |
| BsrGI | TGTACA | 1 cut(s) | 52 |
| BsrI | ACTGG | 2 cut(s) | 140, 742 |
| BssECI | CCNNGG | 6 cut(s) | 88, 273, 939, 952, 982, 1049 |
| BssHII | GCGCGC | 1 cut(s) | 438 |
| BssMI | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| BssT1I | CCWWGG | 1 cut(s) | 1049 |
| Bst2UI | CCWGG | 2 cut(s) | 372, 984 |
| Bst4CI | ACNGT | 1 cut(s) | 929 |
| Bst6I | CTCTTC | 2 cut(s) | 874, 1087 |
| BstAUI | TGTACA | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 5 cut(s) | 440, 444, 576, 881, 1013 |
| BstDSI | CCRYGG | 2 cut(s) | 273, 939 |
| BstF5I | GGATG | 2 cut(s) | 31, 626 |
| BstHHI | GCGC | 7 cut(s) | 67, 440, 442, 544, 574, 830, 1011 |
| BstKTI | GATC | 5 cut(s) | 82, 187, 678, 729, 1131 |
| BstMAI | GTCTC | 1 cut(s) | 871 |
| BstMBI | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| BstMCI | CGRYCG | 2 cut(s) | 279, 564 |
| BstNI | CCWGG | 2 cut(s) | 372, 984 |
| BstNSI | RCATGY | 1 cut(s) | 825 |
| BstSCI | CCNGG | 5 cut(s) | 88, 370, 951, 982, 1034 |
| BstSFI | CTRYAG | 1 cut(s) | 401 |
| BstV1I | GCAGC | 3 cut(s) | 387, 415, 815 |
| BstX2I | RGATCY | 2 cut(s) | 675, 1128 |
| BstYI | RGATCY | 2 cut(s) | 675, 1128 |
| BstZI | CGGCCG | 1 cut(s) | 276 |
| Bsu36I | CCTNAGG | 1 cut(s) | 36 |
| BsuRI | GGCC | 7 cut(s) | 98, 242, 278, 719, 740, 912, 1047 |
| BtgI | CCRYGG | 2 cut(s) | 273, 939 |
| BtsCI | GGATG | 2 cut(s) | 31, 626 |
| BtsI | GCAGTG | 1 cut(s) | 1111 |
| BtsIMutI | CAGTG | 3 cut(s) | 189, 492, 1111 |
| BveI | ACCTGC | 3 cut(s) | 58, 574, 678 |
| Cac8I | GCNNGC | 5 cut(s) | 440, 444, 576, 881, 1013 |
| CciNI | GCGGCCGC | 1 cut(s) | 276 |
| CfoI | GCGC | 7 cut(s) | 67, 440, 442, 544, 574, 830, 1011 |
| Cfr13I | GGNCC | 8 cut(s) | 241, 416, 667, 696, 718, 739, 1020, 1046 |
| Cfr42I | CCGCGG | 2 cut(s) | 276, 942 |
| CseI | GACGC | 1 cut(s) | 245 |
| Csp6I | GTAC | 4 cut(s) | 12, 29, 53, 1092 |
| CviAII | CATG | 2 cut(s) | 822, 891 |
| CviQI | GTAC | 4 cut(s) | 12, 29, 53, 1092 |
| DpnI | GATC | 5 cut(s) | 81, 186, 677, 728, 1130 |
| DpnII | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 414 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 414 |
| EaeI | YGGCCR | 1 cut(s) | 276 |
| EagI | CGGCCG | 1 cut(s) | 276 |
| Eam1104I | CTCTTC | 2 cut(s) | 874, 1087 |
| EarI | CTCTTC | 2 cut(s) | 874, 1087 |
| EciI | GGCGGA | 1 cut(s) | 920 |
| Ecl136II | GAGCTC | 1 cut(s) | 452 |
| EclXI | CGGCCG | 1 cut(s) | 276 |
| Eco130I | CCWWGG | 1 cut(s) | 1049 |
| Eco24I | GRGCYC | 2 cut(s) | 198, 454 |
| Eco47I | GGWCC | 4 cut(s) | 416, 667, 696, 1020 |
| Eco52I | CGGCCG | 1 cut(s) | 276 |
| Eco53kI | GAGCTC | 1 cut(s) | 452 |
| Eco57I | CTGAAG | 2 cut(s) | 698, 855 |
| Eco81I | CCTNAGG | 1 cut(s) | 36 |
| Eco88I | CYCGRG | 1 cut(s) | 317 |
| EcoICRI | GAGCTC | 1 cut(s) | 452 |
| EcoO109I | RGGNCCY | 2 cut(s) | 416, 667 |
| EcoRII | CCWGG | 2 cut(s) | 370, 982 |
| EcoT14I | CCWWGG | 1 cut(s) | 1049 |
| EcoT38I | GRGCYC | 2 cut(s) | 198, 454 |
| ErhI | CCWWGG | 1 cut(s) | 1049 |
| Esp3I | CGTCTC | 1 cut(s) | 871 |
| FaeI | CATG | 2 cut(s) | 825, 894 |
| FaiI | YATR | 7 cut(s) | 353, 380, 517, 519, 823, 892, 1062 |
| FaqI | GGGAC | 3 cut(s) | 226, 407, 680 |
| FatI | CATG | 2 cut(s) | 821, 890 |
| FauI | CCCGC | 2 cut(s) | 638, 888 |
| FblI | GTMKAC | 2 cut(s) | 924, 945 |
| FokI | GGATG | 2 cut(s) | 38, 613 |
| FriOI | GRGCYC | 2 cut(s) | 198, 454 |
| FspBI | CTAG | 2 cut(s) | 579, 788 |
| FspI | TGCGCA | 1 cut(s) | 573 |
| GlaI | GCGC | 7 cut(s) | 66, 439, 441, 543, 573, 829, 1010 |
| GsaI | CCCAGC | 1 cut(s) | 213 |
| GsuI | CTGGAG | 1 cut(s) | 354 |
| HaeIII | GGCC | 7 cut(s) | 98, 242, 278, 719, 740, 912, 1047 |
| HapII | CCGG | 6 cut(s) | 23, 90, 227, 952, 1036, 1120 |
| HgaI | GACGC | 1 cut(s) | 245 |
| HhaI | GCGC | 7 cut(s) | 67, 440, 442, 544, 574, 830, 1011 |
| Hin1II | CATG | 2 cut(s) | 825, 894 |
| Hin6I | GCGC | 7 cut(s) | 65, 438, 440, 542, 572, 828, 1009 |
| HinP1I | GCGC | 7 cut(s) | 65, 438, 440, 542, 572, 828, 1009 |
| HincII | GTYRAC | 1 cut(s) | 286 |
| HindII | GTYRAC | 1 cut(s) | 286 |
| HinfI | GANTC | 5 cut(s) | 107, 635, 851, 860, 1004 |
| HpaII | CCGG | 6 cut(s) | 23, 90, 227, 952, 1036, 1120 |
| HphI | GGTGA | 1 cut(s) | 766 |
| Hpy166II | GTNNAC | 3 cut(s) | 286, 925, 946 |
| Hpy188I | TCNGA | 4 cut(s) | 696, 856, 874, 1133 |
| Hpy8I | GTNNAC | 3 cut(s) | 286, 925, 946 |
| Hpy99I | CGWCG | 1 cut(s) | 254 |
| HpyAV | CCTTC | 9 cut(s) | 29, 460, 701, 817, 894, 902, 1048, 1058, 1085 |
| HpyCH4III | ACNGT | 1 cut(s) | 929 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 403, 611 |
| Hsp92II | CATG | 2 cut(s) | 825, 894 |
| HspAI | GCGC | 7 cut(s) | 65, 438, 440, 542, 572, 828, 1009 |
| Kpn2I | TCCGGA | 1 cut(s) | 22 |
| KpnI | GGTACC | 1 cut(s) | 1095 |
| KspI | CCGCGG | 2 cut(s) | 276, 942 |
| Kzo9I | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| LmnI | GCTCC | 5 cut(s) | 40, 206, 370, 835, 887 |
| Lsp1109I | GCAGC | 3 cut(s) | 387, 415, 815 |
| LweI | GCATC | 1 cut(s) | 635 |
| MaeI | CTAG | 2 cut(s) | 579, 788 |
| MaeIII | GTNAC | 2 cut(s) | 754, 960 |
| MalI | GATC | 5 cut(s) | 81, 186, 677, 728, 1130 |
| MbiI | CCGCTC | 1 cut(s) | 101 |
| MboI | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| MboII | GAAGA | 6 cut(s) | 17, 861, 909, 924, 927, 1074 |
| MfeI | CAATTG | 1 cut(s) | 722 |
| MflI | RGATCY | 2 cut(s) | 675, 1128 |
| MhlI | GDGCHC | 2 cut(s) | 198, 454 |
| MluCI | AATT | 2 cut(s) | 123, 722 |
| MlyI | GAGTC | 3 cut(s) | 116, 629, 1013 |
| MroI | TCCGGA | 1 cut(s) | 22 |
| MseI | TTAA | 1 cut(s) | 549 |
| MslI | CAYNNNNRTG | 1 cut(s) | 600 |
| MspA1I | CMGCKG | 4 cut(s) | 176, 275, 281, 941 |
| MspI | CCGG | 6 cut(s) | 23, 90, 227, 952, 1036, 1120 |
| MspR9I | CCNGG | 5 cut(s) | 90, 372, 953, 984, 1036 |
| MunI | CAATTG | 1 cut(s) | 722 |
| MvaI | CCWGG | 2 cut(s) | 372, 984 |
| NciI | CCSGG | 3 cut(s) | 90, 953, 1036 |
| NdeII | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| NlaIII | CATG | 2 cut(s) | 825, 894 |
| NmuCI | GTSAC | 1 cut(s) | 754 |
| NotI | GCGGCCGC | 1 cut(s) | 276 |
| NsbI | TGCGCA | 1 cut(s) | 573 |
| NspI | RCATGY | 1 cut(s) | 825 |
| OliI | CACNNNNGTG | 1 cut(s) | 600 |
| PauI | GCGCGC | 1 cut(s) | 438 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 481 |
| PfeI | GAWTC | 2 cut(s) | 851, 860 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 748 |
| PfoI | TCCNGGA | 1 cut(s) | 370 |
| PleI | GAGTC | 3 cut(s) | 115, 629, 1012 |
| PpsI | GAGTC | 3 cut(s) | 115, 629, 1012 |
| PpuMI | RGGWCCY | 2 cut(s) | 416, 667 |
| Psp124BI | GAGCTC | 1 cut(s) | 454 |
| Psp5II | RGGWCCY | 2 cut(s) | 416, 667 |
| Psp6I | CCWGG | 2 cut(s) | 370, 982 |
| PspFI | CCCAGC | 1 cut(s) | 209 |
| PspGI | CCWGG | 2 cut(s) | 370, 982 |
| PspPI | GGNCC | 8 cut(s) | 241, 416, 667, 696, 718, 739, 1020, 1046 |
| PspPPI | RGGWCCY | 2 cut(s) | 416, 667 |
| PstI | CTGCAG | 1 cut(s) | 405 |
| PsuI | RGATCY | 2 cut(s) | 675, 1128 |
| PteI | GCGCGC | 1 cut(s) | 438 |
| RsaI | GTAC | 4 cut(s) | 13, 30, 54, 1093 |
| RsaNI | GTAC | 4 cut(s) | 12, 29, 53, 1092 |
| RseI | CAYNNNNRTG | 1 cut(s) | 600 |
| SacI | GAGCTC | 1 cut(s) | 454 |
| SacII | CCGCGG | 2 cut(s) | 276, 942 |
| SaqAI | TTAA | 1 cut(s) | 549 |
| Sau3AI | GATC | 5 cut(s) | 79, 184, 675, 726, 1128 |
| Sau96I | GGNCC | 8 cut(s) | 241, 416, 667, 696, 718, 739, 1020, 1046 |
| SchI | GAGTC | 3 cut(s) | 116, 629, 1013 |
| ScrFI | CCNGG | 5 cut(s) | 90, 372, 953, 984, 1036 |
| SduI | GDGCHC | 2 cut(s) | 198, 454 |
| SfaNI | GCATC | 1 cut(s) | 635 |
| SfcI | CTRYAG | 1 cut(s) | 401 |
| Sfr303I | CCGCGG | 2 cut(s) | 276, 942 |
| SgrBI | CCGCGG | 2 cut(s) | 276, 942 |
| SinI | GGWCC | 4 cut(s) | 416, 667, 696, 1020 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 600 |
| SmlI | CTYRAG | 4 cut(s) | 102, 258, 453, 767 |
| SmoI | CTYRAG | 4 cut(s) | 102, 258, 453, 767 |
| Sse9I | AATT | 2 cut(s) | 123, 722 |
| SspI | AATATT | 1 cut(s) | 461 |
| SspMI | CTAG | 2 cut(s) | 579, 788 |
| SstI | GAGCTC | 1 cut(s) | 454 |
| StyD4I | CCNGG | 5 cut(s) | 88, 370, 951, 982, 1034 |
| StyI | CCWWGG | 1 cut(s) | 1049 |
| TaaI | ACNGT | 1 cut(s) | 929 |
| TaqI | TCGA | 5 cut(s) | 252, 357, 510, 729, 810 |
| TasI | AATT | 2 cut(s) | 123, 722 |
| TatI | WGTACW | 3 cut(s) | 11, 28, 52 |
| TauI | GCSGC | 8 cut(s) | 101, 242, 275, 278, 281, 480, 828, 842 |
| TfiI | GAWTC | 2 cut(s) | 851, 860 |
| Tru1I | TTAA | 1 cut(s) | 549 |
| Tru9I | TTAA | 1 cut(s) | 549 |
| TscAI | CASTG | 3 cut(s) | 196, 499, 1111 |
| TseFI | GTSAC | 1 cut(s) | 754 |
| TseI | GCWGC | 3 cut(s) | 400, 403, 803 |
| Tsp45I | GTSAC | 1 cut(s) | 754 |
| TspDTI | ATGAA | 2 cut(s) | 399, 1077 |
| TspGWI | ACGGA | 1 cut(s) | 853 |
| TspRI | CASTG | 3 cut(s) | 196, 499, 1111 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 748 |
| VpaK11BI | GGWCC | 4 cut(s) | 416, 667, 696, 1020 |
| XceI | RCATGY | 1 cut(s) | 825 |
| XmiI | GTMKAC | 2 cut(s) | 924, 945 |
| XspI | CTAG | 2 cut(s) | 579, 788 |