Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 880 |
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 3 cut(s) | 83, 163, 269 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 979 |
| AccII | CGCG | 3 cut(s) | 342, 349, 355 |
| AciI | CCGC | 9 cut(s) | 88, 167, 220, 349, 426, 471, 690, 796, 937 |
| AclWI | GGATC | 3 cut(s) | 905, 907, 920 |
| AcoI | YGGCCR | 5 cut(s) | 183, 221, 302, 793, 966 |
| AcsI | RAATTY | 1 cut(s) | 722 |
| AfaI | GTAC | 3 cut(s) | 760, 788, 822 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 294, 425, 554, 824, 979 |
| AgeI | ACCGGT | 2 cut(s) | 539, 817 |
| AgsI | TTSAA | 1 cut(s) | 101 |
| AjnI | CCWGG | 1 cut(s) | 702 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 909, 941 |
| AluBI | AGCT | 4 cut(s) | 264, 442, 830, 955 |
| AluI | AGCT | 4 cut(s) | 264, 442, 830, 955 |
| Alw21I | GWGCWC | 2 cut(s) | 711, 832 |
| Alw26I | GTCTC | 2 cut(s) | 320, 866 |
| AlwI | GGATC | 3 cut(s) | 905, 907, 920 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 264 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| ApeKI | GCWGC | 5 cut(s) | 423, 439, 446, 624, 955 |
| ApoI | RAATTY | 1 cut(s) | 722 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| AseI | ATTAAT | 1 cut(s) | 552 |
| AsiGI | ACCGGT | 2 cut(s) | 539, 817 |
| AspLEI | GCGC | 2 cut(s) | 355, 629 |
| AspS9I | GGNCC | 5 cut(s) | 117, 158, 610, 781, 887 |
| AsuC2I | CCSGG | 1 cut(s) | 671 |
| AsuHPI | GGTGA | 2 cut(s) | 529, 589 |
| BaeGI | GKGCMC | 1 cut(s) | 274 |
| BalI | TGGCCA | 1 cut(s) | 304 |
| BamHI | GGATCC | 1 cut(s) | 912 |
| BanI | GGYRCC | 3 cut(s) | 83, 163, 269 |
| BanII | GRGCYC | 1 cut(s) | 832 |
| Bbv12I | GWGCWC | 2 cut(s) | 711, 832 |
| BbvI | GCAGC | 5 cut(s) | 433, 435, 451, 636, 942 |
| BccI | CCATC | 7 cut(s) | 120, 313, 320, 404, 420, 542, 645 |
| BceAI | ACGGC | 2 cut(s) | 795, 808 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BciT130I | CCWGG | 1 cut(s) | 704 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BcnI | CCSGG | 1 cut(s) | 671 |
| BcoDI | GTCTC | 2 cut(s) | 320, 866 |
| BfaI | CTAG | 5 cut(s) | 249, 773, 824, 876, 985 |
| BfoI | RGCGCY | 1 cut(s) | 630 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BisI | GCNGC | 8 cut(s) | 221, 424, 427, 440, 447, 625, 796, 956 |
| BlsI | GCNGC | 8 cut(s) | 222, 425, 428, 441, 448, 626, 797, 957 |
| Bme1390I | CCNGG | 2 cut(s) | 671, 704 |
| BmgT120I | GGNCC | 5 cut(s) | 117, 158, 610, 781, 887 |
| BmiI | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 165, 271, 640, 889, 914 |
| BmrFI | CCNGG | 2 cut(s) | 671, 704 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 1 cut(s) | 871 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 1 cut(s) | 725 |
| BpuMI | CCSGG | 1 cut(s) | 671 |
| Bsa29I | ATCGAT | 1 cut(s) | 399 |
| BsaJI | CCNNGG | 1 cut(s) | 606 |
| BsaWI | WCCGGW | 3 cut(s) | 149, 539, 817 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 294, 425, 554, 824, 979 |
| Bse118I | RCCGGY | 4 cut(s) | 160, 539, 817, 964 |
| Bse1I | ACTGG | 4 cut(s) | 159, 230, 716, 760 |
| BseBI | CCWGG | 1 cut(s) | 704 |
| BseCI | ATCGAT | 1 cut(s) | 399 |
| BseDI | CCNNGG | 1 cut(s) | 606 |
| BseGI | GGATG | 3 cut(s) | 305, 862, 948 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 294, 425, 554, 824, 979 |
| BseNI | ACTGG | 4 cut(s) | 159, 230, 716, 760 |
| BseSI | GKGCMC | 1 cut(s) | 274 |
| BseX3I | CGGCCG | 3 cut(s) | 183, 793, 966 |
| BseXI | GCAGC | 5 cut(s) | 433, 435, 451, 636, 942 |
| BseYI | CCCAGC | 2 cut(s) | 264, 612 |
| BsgI | GTGCAG | 1 cut(s) | 718 |
| Bsh1236I | CGCG | 3 cut(s) | 342, 349, 355 |
| Bsh1285I | CGRYCG | 3 cut(s) | 186, 796, 969 |
| BshNI | GGYRCC | 3 cut(s) | 83, 163, 269 |
| BshTI | ACCGGT | 2 cut(s) | 539, 817 |
| BshVI | ATCGAT | 1 cut(s) | 399 |
| BsiEI | CGRYCG | 3 cut(s) | 186, 796, 969 |
| BsiHKAI | GWGCWC | 2 cut(s) | 711, 832 |
| BsiSI | CCGG | 8 cut(s) | 150, 161, 182, 217, 540, 670, 818, 965 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 294, 425, 554, 824, 979 |
| BsmAI | GTCTC | 2 cut(s) | 320, 866 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| Bsp1286I | GDGCHC | 3 cut(s) | 274, 711, 832 |
| Bsp1407I | TGTACA | 1 cut(s) | 786 |
| Bsp143I | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspACI | CCGC | 9 cut(s) | 88, 167, 220, 349, 426, 471, 690, 796, 937 |
| BspDI | ATCGAT | 1 cut(s) | 399 |
| BspFNI | CGCG | 3 cut(s) | 342, 349, 355 |
| BspLI | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 165, 271, 640, 889, 914 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 3 cut(s) | 905, 907, 920 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 163, 269 |
| BsrFI | RCCGGY | 4 cut(s) | 160, 539, 817, 964 |
| BsrGI | TGTACA | 1 cut(s) | 786 |
| BsrI | ACTGG | 4 cut(s) | 159, 230, 716, 760 |
| BssAI | RCCGGY | 4 cut(s) | 160, 539, 817, 964 |
| BssECI | CCNNGG | 1 cut(s) | 606 |
| BssMI | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 1 cut(s) | 704 |
| Bst4CI | ACNGT | 2 cut(s) | 620, 635 |
| Bst6I | CTCTTC | 2 cut(s) | 318, 774 |
| BstAUI | TGTACA | 1 cut(s) | 786 |
| BstC8I | GCNNGC | 5 cut(s) | 162, 351, 444, 842, 966 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstF5I | GGATG | 3 cut(s) | 305, 862, 948 |
| BstFNI | CGCG | 3 cut(s) | 342, 349, 355 |
| BstH2I | RGCGCY | 1 cut(s) | 630 |
| BstHHI | GCGC | 2 cut(s) | 355, 629 |
| BstKTI | GATC | 5 cut(s) | 31, 361, 403, 900, 915 |
| BstMAI | GTCTC | 2 cut(s) | 320, 866 |
| BstMBI | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| BstMCI | CGRYCG | 3 cut(s) | 186, 796, 969 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 166, 885, 961 |
| BstNI | CCWGG | 1 cut(s) | 704 |
| BstNSI | RCATGY | 2 cut(s) | 844, 883 |
| BstSCI | CCNGG | 2 cut(s) | 669, 702 |
| BstSLI | GKGCMC | 1 cut(s) | 274 |
| BstUI | CGCG | 3 cut(s) | 342, 349, 355 |
| BstV1I | GCAGC | 5 cut(s) | 433, 435, 451, 636, 942 |
| BstX2I | RGATCY | 3 cut(s) | 358, 897, 912 |
| BstYI | RGATCY | 3 cut(s) | 358, 897, 912 |
| BstZI | CGGCCG | 3 cut(s) | 183, 793, 966 |
| Bsu15I | ATCGAT | 1 cut(s) | 399 |
| BsuTUI | ATCGAT | 1 cut(s) | 399 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtsCI | GGATG | 3 cut(s) | 305, 862, 948 |
| BtsIMutI | CAGTG | 3 cut(s) | 640, 709, 753 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 5 cut(s) | 162, 351, 444, 842, 966 |
| CaiI | CAGNNNCTG | 1 cut(s) | 264 |
| CfoI | GCGC | 2 cut(s) | 355, 629 |
| Cfr10I | RCCGGY | 4 cut(s) | 160, 539, 817, 964 |
| Cfr13I | GGNCC | 5 cut(s) | 117, 158, 610, 781, 887 |
| ClaI | ATCGAT | 1 cut(s) | 399 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 3 cut(s) | 759, 787, 821 |
| CspAI | ACCGGT | 2 cut(s) | 539, 817 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 636, 671 |
| CviAII | CATG | 4 cut(s) | 572, 607, 841, 880 |
| CviQI | GTAC | 3 cut(s) | 759, 787, 821 |
| DpnI | GATC | 5 cut(s) | 30, 360, 402, 899, 914 |
| DpnII | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 880 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 880 |
| EaeI | YGGCCR | 5 cut(s) | 183, 221, 302, 793, 966 |
| EagI | CGGCCG | 3 cut(s) | 183, 793, 966 |
| Eam1104I | CTCTTC | 2 cut(s) | 318, 774 |
| EarI | CTCTTC | 2 cut(s) | 318, 774 |
| EciI | GGCGGA | 1 cut(s) | 926 |
| Ecl136II | GAGCTC | 1 cut(s) | 830 |
| EclXI | CGGCCG | 3 cut(s) | 183, 793, 966 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 1 cut(s) | 832 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco52I | CGGCCG | 3 cut(s) | 183, 793, 966 |
| Eco53kI | GAGCTC | 1 cut(s) | 830 |
| EcoICRI | GAGCTC | 1 cut(s) | 830 |
| EcoRII | CCWGG | 1 cut(s) | 702 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT22I | ATGCAT | 1 cut(s) | 864 |
| EcoT38I | GRGCYC | 1 cut(s) | 832 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| FaeI | CATG | 4 cut(s) | 575, 610, 844, 883 |
| FaiI | YATR | 9 cut(s) | 63, 204, 393, 406, 573, 608, 842, 847, 881 |
| FatI | CATG | 4 cut(s) | 571, 606, 840, 879 |
| FauI | CCCGC | 2 cut(s) | 95, 342 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 8 cut(s) | 221, 424, 427, 440, 447, 625, 796, 956 |
| FokI | GGATG | 3 cut(s) | 292, 849, 935 |
| FriOI | GRGCYC | 1 cut(s) | 832 |
| Fsp4HI | GCNGC | 8 cut(s) | 221, 424, 427, 440, 447, 625, 796, 956 |
| FspBI | CTAG | 5 cut(s) | 249, 773, 824, 876, 985 |
| GlaI | GCGC | 2 cut(s) | 354, 628 |
| GluI | GCNGC | 8 cut(s) | 221, 424, 427, 440, 447, 625, 796, 956 |
| GsaI | CCCAGC | 2 cut(s) | 268, 616 |
| GsuI | CTGGAG | 1 cut(s) | 725 |
| HaeII | RGCGCY | 1 cut(s) | 630 |
| HapII | CCGG | 8 cut(s) | 150, 161, 182, 217, 540, 670, 818, 965 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 2 cut(s) | 355, 629 |
| Hin1II | CATG | 4 cut(s) | 575, 610, 844, 883 |
| Hin6I | GCGC | 2 cut(s) | 353, 627 |
| HinP1I | GCGC | 2 cut(s) | 353, 627 |
| HincII | GTYRAC | 1 cut(s) | 592 |
| HindII | GTYRAC | 1 cut(s) | 592 |
| HinfI | GANTC | 6 cut(s) | 132, 244, 495, 584, 693, 766 |
| HpaII | CCGG | 8 cut(s) | 150, 161, 182, 217, 540, 670, 818, 965 |
| HphI | GGTGA | 2 cut(s) | 529, 589 |
| Hpy166II | GTNNAC | 1 cut(s) | 592 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 239, 322 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 341, 463, 871, 895, 910 |
| Hpy8I | GTNNAC | 1 cut(s) | 592 |
| Hpy99I | CGWCG | 2 cut(s) | 191, 806 |
| HpyAV | CCTTC | 5 cut(s) | 137, 223, 234, 877, 901 |
| HpyCH4III | ACNGT | 2 cut(s) | 620, 635 |
| HpyCH4IV | ACGT | 1 cut(s) | 801 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 571, 720, 735, 862 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 166, 885, 961 |
| HpySE526I | ACGT | 1 cut(s) | 801 |
| Hsp92II | CATG | 4 cut(s) | 575, 610, 844, 883 |
| HspAI | GCGC | 2 cut(s) | 353, 627 |
| KroI | GCCGGC | 2 cut(s) | 160, 964 |
| KroNI | GCCGGC | 2 cut(s) | 162, 966 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| LmnI | GCTCC | 3 cut(s) | 10, 706, 827 |
| Lsp1109I | GCAGC | 5 cut(s) | 433, 435, 451, 636, 942 |
| LweI | GCATC | 1 cut(s) | 871 |
| MaeI | CTAG | 5 cut(s) | 249, 773, 824, 876, 985 |
| MaeII | ACGT | 1 cut(s) | 801 |
| MalI | GATC | 5 cut(s) | 30, 360, 402, 899, 914 |
| MboI | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| MboII | GAAGA | 9 cut(s) | 25, 50, 86, 89, 335, 407, 721, 761, 925 |
| MflI | RGATCY | 3 cut(s) | 358, 897, 912 |
| MhlI | GDGCHC | 3 cut(s) | 274, 711, 832 |
| MlsI | TGGCCA | 1 cut(s) | 304 |
| MluCI | AATT | 4 cut(s) | 41, 225, 578, 722 |
| MluNI | TGGCCA | 1 cut(s) | 304 |
| MlyI | GAGTC | 2 cut(s) | 238, 760 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 6 cut(s) | 28, 115, 245, 319, 610, 751 |
| Mox20I | TGGCCA | 1 cut(s) | 304 |
| Mph1103I | ATGCAT | 1 cut(s) | 864 |
| MroNI | GCCGGC | 2 cut(s) | 160, 964 |
| MscI | TGGCCA | 1 cut(s) | 304 |
| MseI | TTAA | 1 cut(s) | 552 |
| Msp20I | TGGCCA | 1 cut(s) | 304 |
| MspA1I | CMGCKG | 3 cut(s) | 426, 690, 955 |
| MspI | CCGG | 8 cut(s) | 150, 161, 182, 217, 540, 670, 818, 965 |
| MspR9I | CCNGG | 2 cut(s) | 671, 704 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 704 |
| MvnI | CGCG | 3 cut(s) | 342, 349, 355 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 166, 885, 961 |
| NaeI | GCCGGC | 2 cut(s) | 162, 966 |
| NciI | CCSGG | 1 cut(s) | 671 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| NgoMIV | GCCGGC | 2 cut(s) | 160, 964 |
| NlaIII | CATG | 4 cut(s) | 575, 610, 844, 883 |
| NlaIV | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 165, 271, 640, 889, 914 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| NsiI | ATGCAT | 1 cut(s) | 864 |
| NspI | RCATGY | 2 cut(s) | 844, 883 |
| PaeI | GCATGC | 1 cut(s) | 844 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 798 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PdiI | GCCGGC | 2 cut(s) | 162, 966 |
| PfeI | GAWTC | 4 cut(s) | 132, 495, 584, 693 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 979 |
| PfoI | TCCNGGA | 1 cut(s) | 702 |
| PinAI | ACCGGT | 2 cut(s) | 539, 817 |
| PkrI | GCNGC | 8 cut(s) | 222, 425, 428, 441, 448, 626, 797, 957 |
| PleI | GAGTC | 2 cut(s) | 238, 760 |
| PpsI | GAGTC | 2 cut(s) | 238, 760 |
| PshBI | ATTAAT | 1 cut(s) | 552 |
| Psp124BI | GAGCTC | 1 cut(s) | 832 |
| Psp6I | CCWGG | 1 cut(s) | 702 |
| PspFI | CCCAGC | 2 cut(s) | 264, 612 |
| PspGI | CCWGG | 1 cut(s) | 702 |
| PspN4I | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 165, 271, 640, 889, 914 |
| PspPI | GGNCC | 5 cut(s) | 117, 158, 610, 781, 887 |
| PstNI | CAGNNNCTG | 1 cut(s) | 264 |
| PsuI | RGATCY | 3 cut(s) | 358, 897, 912 |
| PvuII | CAGCTG | 1 cut(s) | 955 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 3 cut(s) | 760, 788, 822 |
| RsaNI | GTAC | 3 cut(s) | 759, 787, 821 |
| SacI | GAGCTC | 1 cut(s) | 832 |
| SaqAI | TTAA | 1 cut(s) | 552 |
| SatI | GCNGC | 8 cut(s) | 221, 424, 427, 440, 447, 625, 796, 956 |
| Sau3AI | GATC | 5 cut(s) | 28, 358, 400, 897, 912 |
| Sau96I | GGNCC | 5 cut(s) | 117, 158, 610, 781, 887 |
| SchI | GAGTC | 2 cut(s) | 238, 760 |
| ScrFI | CCNGG | 2 cut(s) | 671, 704 |
| SduI | GDGCHC | 3 cut(s) | 274, 711, 832 |
| SetI | ASST | 8 cut(s) | 107, 266, 385, 444, 602, 804, 832, 957 |
| SfaNI | GCATC | 1 cut(s) | 871 |
| SphI | GCATGC | 1 cut(s) | 844 |
| Sse9I | AATT | 4 cut(s) | 41, 225, 578, 722 |
| SsiI | CCGC | 9 cut(s) | 88, 167, 220, 349, 426, 471, 690, 796, 937 |
| SspMI | CTAG | 5 cut(s) | 249, 773, 824, 876, 985 |
| SstI | GAGCTC | 1 cut(s) | 832 |
| StyD4I | CCNGG | 2 cut(s) | 669, 702 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 2 cut(s) | 620, 635 |
| TaiI | ACGT | 1 cut(s) | 804 |
| TaqI | TCGA | 4 cut(s) | 130, 399, 602, 870 |
| TaqII | GACCGA | 1 cut(s) | 488 |
| TasI | AATT | 4 cut(s) | 41, 225, 578, 722 |
| TatI | WGTACW | 1 cut(s) | 786 |
| TauI | GCSGC | 3 cut(s) | 223, 429, 798 |
| TfiI | GAWTC | 4 cut(s) | 132, 495, 584, 693 |
| Tru1I | TTAA | 1 cut(s) | 552 |
| Tru9I | TTAA | 1 cut(s) | 552 |
| TscAI | CASTG | 3 cut(s) | 640, 716, 760 |
| TseI | GCWGC | 5 cut(s) | 423, 439, 446, 624, 955 |
| TspRI | CASTG | 3 cut(s) | 640, 716, 760 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 979 |
| VspI | ATTAAT | 1 cut(s) | 552 |
| XapI | RAATTY | 1 cut(s) | 722 |
| XceI | RCATGY | 2 cut(s) | 844, 883 |
| XspI | CTAG | 5 cut(s) | 249, 773, 824, 876, 985 |
| Zsp2I | ATGCAT | 1 cut(s) | 864 |