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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 210 |
| AccBSI | CCGCTC | 1 cut(s) | 929 |
| AccI | GTMKAC | 1 cut(s) | 679 |
| AccII | CGCG | 8 cut(s) | 94, 269, 385, 551, 630, 719, 725, 759 |
| AclWI | GGATC | 4 cut(s) | 35, 83, 95, 253 |
| AcoI | YGGCCR | 1 cut(s) | 825 |
| AcuI | CTGAAG | 3 cut(s) | 30, 785, 795 |
| AcyI | GRCGYC | 1 cut(s) | 710 |
| AfaI | GTAC | 5 cut(s) | 183, 357, 633, 750, 822 |
| AflIII | ACRYGT | 1 cut(s) | 267 |
| AgsI | TTSAA | 4 cut(s) | 17, 365, 638, 794 |
| AjnI | CCWGG | 6 cut(s) | 285, 649, 827, 900, 909, 957 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 957, 989 |
| AluBI | AGCT | 5 cut(s) | 236, 381, 731, 935, 951 |
| AluI | AGCT | 5 cut(s) | 236, 381, 731, 935, 951 |
| Alw21I | GWGCWC | 1 cut(s) | 160 |
| Alw26I | GTCTC | 2 cut(s) | 692, 891 |
| AlwI | GGATC | 4 cut(s) | 35, 83, 95, 253 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 292 |
| Ama87I | CYCGRG | 1 cut(s) | 560 |
| AoxI | GGCC | 6 cut(s) | 66, 804, 825, 897, 916, 991 |
| ApeKI | GCWGC | 7 cut(s) | 197, 254, 491, 575, 578, 935, 938 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 64, 96 |
| AscI | GGCGCGCC | 1 cut(s) | 717 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| AspLEI | GCGC | 4 cut(s) | 292, 601, 719, 721 |
| AspS9I | GGNCC | 6 cut(s) | 67, 222, 695, 805, 898, 916 |
| AsuC2I | CCSGG | 1 cut(s) | 714 |
| AvaI | CYCGRG | 1 cut(s) | 560 |
| AvaII | GGWCC | 2 cut(s) | 222, 695 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 804, 837 |
| BauI | CACGAG | 1 cut(s) | 446 |
| BbsI | GAAGAC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 1 cut(s) | 160 |
| BbvI | GCAGC | 7 cut(s) | 184, 241, 478, 562, 565, 922, 925 |
| BccI | CCATC | 2 cut(s) | 329, 776 |
| BciT130I | CCWGG | 6 cut(s) | 287, 651, 829, 902, 911, 959 |
| BcnI | CCSGG | 1 cut(s) | 714 |
| BcoDI | GTCTC | 2 cut(s) | 692, 891 |
| BfaI | CTAG | 3 cut(s) | 137, 353, 669 |
| BfoI | RGCGCY | 1 cut(s) | 293 |
| BfuAI | ACCTGC | 1 cut(s) | 210 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 65, 915 |
| BglII | AGATCT | 1 cut(s) | 796 |
| Bme1390I | CCNGG | 7 cut(s) | 287, 651, 714, 829, 902, 911, 959 |
| Bme18I | GGWCC | 2 cut(s) | 222, 695 |
| BmeT110I | CYCGRG | 1 cut(s) | 560 |
| BmgT120I | GGNCC | 6 cut(s) | 67, 222, 695, 805, 898, 916 |
| BmiI | GGNNCC | 6 cut(s) | 6, 555, 567, 696, 697, 766 |
| BmrFI | CCNGG | 7 cut(s) | 287, 651, 714, 829, 902, 911, 959 |
| BmsI | GCATC | 3 cut(s) | 417, 655, 934 |
| BpiI | GAAGAC | 1 cut(s) | 24 |
| BpmI | CTGGAG | 4 cut(s) | 211, 592, 672, 875 |
| Bpu10I | CCTNAGC | 1 cut(s) | 865 |
| BpuEI | CTTGAG | 2 cut(s) | 873, 915 |
| BpuMI | CCSGG | 1 cut(s) | 714 |
| BsaAI | YACGTR | 1 cut(s) | 683 |
| BsaBI | GATNNNNATC | 1 cut(s) | 39 |
| BsaHI | GRCGYC | 1 cut(s) | 710 |
| BsaJI | CCNNGG | 4 cut(s) | 104, 285, 900, 994 |
| BsaWI | WCCGGW | 1 cut(s) | 526 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 869, 899, 957, 987 |
| Bse118I | RCCGGY | 1 cut(s) | 823 |
| Bse1I | ACTGG | 6 cut(s) | 165, 359, 398, 618, 858, 900 |
| Bse8I | GATNNNNATC | 1 cut(s) | 39 |
| BseBI | CCWGG | 6 cut(s) | 287, 651, 829, 902, 911, 959 |
| BseDI | CCNNGG | 4 cut(s) | 104, 285, 900, 994 |
| BseGI | GGATG | 2 cut(s) | 646, 967 |
| BseJI | GATNNNNATC | 1 cut(s) | 39 |
| BseMII | CTCAG | 2 cut(s) | 734, 800 |
| BseNI | ACTGG | 6 cut(s) | 165, 359, 398, 618, 858, 900 |
| BsePI | GCGCGC | 1 cut(s) | 717 |
| BseXI | GCAGC | 7 cut(s) | 184, 241, 478, 562, 565, 922, 925 |
| BseYI | CCCAGC | 1 cut(s) | 236 |
| Bsh1236I | CGCG | 8 cut(s) | 94, 269, 385, 551, 630, 719, 725, 759 |
| Bsh1285I | CGRYCG | 1 cut(s) | 188 |
| BshFI | GGCC | 6 cut(s) | 68, 806, 827, 899, 918, 993 |
| BsiEI | CGRYCG | 1 cut(s) | 188 |
| BsiHKAI | GWGCWC | 1 cut(s) | 160 |
| BsiHKCI | CYCGRG | 1 cut(s) | 560 |
| BsiSI | CCGG | 3 cut(s) | 527, 713, 824 |
| BslFI | GGGAC | 1 cut(s) | 708 |
| BsmAI | GTCTC | 2 cut(s) | 692, 891 |
| BsmFI | GGGAC | 1 cut(s) | 708 |
| BsnI | GGCC | 6 cut(s) | 68, 806, 827, 899, 918, 993 |
| BsoBI | CYCGRG | 1 cut(s) | 560 |
| Bsp1286I | GDGCHC | 1 cut(s) | 160 |
| Bsp143I | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| Bsp19I | CCATGG | 1 cut(s) | 104 |
| BspANI | GGCC | 6 cut(s) | 68, 806, 827, 899, 918, 993 |
| BspCNI | CTCAG | 2 cut(s) | 735, 799 |
| BspFNI | CGCG | 8 cut(s) | 94, 269, 385, 551, 630, 719, 725, 759 |
| BspLI | GGNNCC | 6 cut(s) | 6, 555, 567, 696, 697, 766 |
| BspMI | ACCTGC | 1 cut(s) | 210 |
| BspPI | GGATC | 4 cut(s) | 35, 83, 95, 253 |
| BsrBI | CCGCTC | 1 cut(s) | 929 |
| BsrFI | RCCGGY | 1 cut(s) | 823 |
| BsrI | ACTGG | 6 cut(s) | 165, 359, 398, 618, 858, 900 |
| BssAI | RCCGGY | 1 cut(s) | 823 |
| BssECI | CCNNGG | 4 cut(s) | 104, 285, 900, 994 |
| BssHII | GCGCGC | 1 cut(s) | 717 |
| BssMI | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| BssNI | GRCGYC | 1 cut(s) | 710 |
| BssSI | CACGAG | 1 cut(s) | 446 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| Bst2BI | CACGAG | 1 cut(s) | 446 |
| Bst2UI | CCWGG | 6 cut(s) | 287, 651, 829, 902, 911, 959 |
| Bst4CI | ACNGT | 2 cut(s) | 189, 817 |
| BstACI | GRCGYC | 1 cut(s) | 710 |
| BstBAI | YACGTR | 1 cut(s) | 683 |
| BstDEI | CTNAG | 3 cut(s) | 743, 786, 865 |
| BstDSI | CCRYGG | 1 cut(s) | 104 |
| BstF5I | GGATG | 2 cut(s) | 646, 967 |
| BstFNI | CGCG | 8 cut(s) | 94, 269, 385, 551, 630, 719, 725, 759 |
| BstH2I | RGCGCY | 1 cut(s) | 293 |
| BstHHI | GCGC | 4 cut(s) | 292, 601, 719, 721 |
| BstKTI | GATC | 7 cut(s) | 43, 91, 103, 133, 248, 418, 799 |
| BstMAI | GTCTC | 2 cut(s) | 692, 891 |
| BstMBI | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| BstMCI | CGRYCG | 1 cut(s) | 188 |
| BstNI | CCWGG | 6 cut(s) | 287, 651, 829, 902, 911, 959 |
| BstSCI | CCNGG | 7 cut(s) | 285, 649, 712, 827, 900, 909, 957 |
| BstSNI | TACGTA | 1 cut(s) | 683 |
| BstUI | CGCG | 8 cut(s) | 94, 269, 385, 551, 630, 719, 725, 759 |
| BstV1I | GCAGC | 7 cut(s) | 184, 241, 478, 562, 565, 922, 925 |
| BstV2I | GAAGAC | 1 cut(s) | 24 |
| BstX2I | RGATCY | 2 cut(s) | 245, 796 |
| BstYI | RGATCY | 2 cut(s) | 245, 796 |
| BsuRI | GGCC | 6 cut(s) | 68, 806, 827, 899, 918, 993 |
| BtgI | CCRYGG | 1 cut(s) | 104 |
| BtsCI | GGATG | 2 cut(s) | 646, 967 |
| BtsIMutI | CAGTG | 3 cut(s) | 158, 331, 771 |
| BveI | ACCTGC | 1 cut(s) | 210 |
| CaiI | CAGNNNCTG | 1 cut(s) | 292 |
| CfoI | GCGC | 4 cut(s) | 292, 601, 719, 721 |
| Cfr10I | RCCGGY | 1 cut(s) | 823 |
| Cfr13I | GGNCC | 6 cut(s) | 67, 222, 695, 805, 898, 916 |
| CseI | GACGC | 4 cut(s) | 258, 275, 557, 718 |
| Csp6I | GTAC | 5 cut(s) | 182, 356, 632, 749, 821 |
| CviAII | CATG | 2 cut(s) | 105, 839 |
| CviQI | GTAC | 5 cut(s) | 182, 356, 632, 749, 821 |
| DdeI | CTNAG | 3 cut(s) | 743, 786, 865 |
| DpnI | GATC | 7 cut(s) | 42, 90, 102, 132, 247, 417, 798 |
| DpnII | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| EaeI | YGGCCR | 1 cut(s) | 825 |
| Eco105I | TACGTA | 1 cut(s) | 683 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco47I | GGWCC | 2 cut(s) | 222, 695 |
| Eco57I | CTGAAG | 3 cut(s) | 30, 785, 795 |
| Eco88I | CYCGRG | 1 cut(s) | 560 |
| EcoO109I | RGGNCCY | 2 cut(s) | 222, 695 |
| EcoRII | CCWGG | 6 cut(s) | 285, 649, 827, 900, 909, 957 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaeI | CATG | 2 cut(s) | 108, 842 |
| FaiI | YATR | 9 cut(s) | 106, 180, 192, 282, 341, 371, 659, 840, 987 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 528, 560 |
| FaqI | GGGAC | 1 cut(s) | 708 |
| FatI | CATG | 2 cut(s) | 104, 838 |
| FauI | CCCGC | 2 cut(s) | 730, 907 |
| FblI | GTMKAC | 1 cut(s) | 679 |
| FokI | GGATG | 2 cut(s) | 633, 974 |
| FspBI | CTAG | 3 cut(s) | 137, 353, 669 |
| GlaI | GCGC | 4 cut(s) | 291, 600, 718, 720 |
| GsaI | CCCAGC | 1 cut(s) | 240 |
| GsuI | CTGGAG | 4 cut(s) | 211, 592, 672, 875 |
| HaeII | RGCGCY | 1 cut(s) | 293 |
| HaeIII | GGCC | 6 cut(s) | 68, 806, 827, 899, 918, 993 |
| HapII | CCGG | 3 cut(s) | 527, 713, 824 |
| HgaI | GACGC | 4 cut(s) | 258, 275, 557, 718 |
| HhaI | GCGC | 4 cut(s) | 292, 601, 719, 721 |
| Hin1I | GRCGYC | 1 cut(s) | 710 |
| Hin1II | CATG | 2 cut(s) | 108, 842 |
| Hin6I | GCGC | 4 cut(s) | 290, 599, 717, 719 |
| HinP1I | GCGC | 4 cut(s) | 290, 599, 717, 719 |
| HinfI | GANTC | 8 cut(s) | 20, 164, 389, 394, 466, 643, 784, 790 |
| HpaII | CCGG | 3 cut(s) | 527, 713, 824 |
| Hpy166II | GTNNAC | 1 cut(s) | 680 |
| Hpy188I | TCNGA | 5 cut(s) | 31, 88, 708, 744, 789 |
| Hpy8I | GTNNAC | 1 cut(s) | 680 |
| Hpy99I | CGWCG | 1 cut(s) | 219 |
| HpyAV | CCTTC | 4 cut(s) | 236, 452, 668, 755 |
| HpyCH4III | ACNGT | 2 cut(s) | 189, 817 |
| HpyCH4IV | ACGT | 2 cut(s) | 501, 682 |
| HpyCH4V | TGCA | 2 cut(s) | 343, 989 |
| HpyF3I | CTNAG | 3 cut(s) | 743, 786, 865 |
| HpySE526I | ACGT | 2 cut(s) | 501, 682 |
| Hsp92I | GRCGYC | 1 cut(s) | 710 |
| Hsp92II | CATG | 2 cut(s) | 108, 842 |
| HspAI | GCGC | 4 cut(s) | 290, 599, 717, 719 |
| KflI | GGGWCCC | 1 cut(s) | 695 |
| Kzo9I | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| LmnI | GCTCC | 4 cut(s) | 553, 571, 764, 856 |
| Lsp1109I | GCAGC | 7 cut(s) | 184, 241, 478, 562, 565, 922, 925 |
| LweI | GCATC | 3 cut(s) | 417, 655, 934 |
| MaeI | CTAG | 3 cut(s) | 137, 353, 669 |
| MaeII | ACGT | 2 cut(s) | 501, 682 |
| MaeIII | GTNAC | 1 cut(s) | 640 |
| MalI | GATC | 7 cut(s) | 42, 90, 102, 132, 247, 417, 798 |
| MbiI | CCGCTC | 1 cut(s) | 929 |
| MboI | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| MboII | GAAGA | 4 cut(s) | 29, 125, 240, 791 |
| MfeI | CAATTG | 1 cut(s) | 51 |
| MflI | RGATCY | 2 cut(s) | 245, 796 |
| MhlI | GDGCHC | 1 cut(s) | 160 |
| MluCI | AATT | 2 cut(s) | 51, 809 |
| MluI | ACGCGT | 1 cut(s) | 267 |
| MlyI | GAGTC | 3 cut(s) | 14, 637, 778 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MseI | TTAA | 2 cut(s) | 149, 812 |
| MspA1I | CMGCKG | 1 cut(s) | 254 |
| MspI | CCGG | 3 cut(s) | 527, 713, 824 |
| MspR9I | CCNGG | 7 cut(s) | 287, 651, 714, 829, 902, 911, 959 |
| MunI | CAATTG | 1 cut(s) | 51 |
| MvaI | CCWGG | 6 cut(s) | 287, 651, 829, 902, 911, 959 |
| MvnI | CGCG | 8 cut(s) | 94, 269, 385, 551, 630, 719, 725, 759 |
| NciI | CCSGG | 1 cut(s) | 714 |
| NcoI | CCATGG | 1 cut(s) | 104 |
| NdeII | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| NlaIII | CATG | 2 cut(s) | 108, 842 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 555, 567, 696, 697, 766 |
| NmuCI | GTSAC | 1 cut(s) | 640 |
| PaeR7I | CTCGAG | 1 cut(s) | 560 |
| PalAI | GGCGCGCC | 1 cut(s) | 717 |
| PauI | GCGCGC | 1 cut(s) | 717 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 389 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PfeI | GAWTC | 5 cut(s) | 164, 389, 394, 466, 790 |
| PfoI | TCCNGGA | 1 cut(s) | 649 |
| PleI | GAGTC | 3 cut(s) | 14, 637, 778 |
| PpsI | GAGTC | 3 cut(s) | 14, 637, 778 |
| Ppu21I | YACGTR | 1 cut(s) | 683 |
| PpuMI | RGGWCCY | 2 cut(s) | 222, 695 |
| Psp5II | RGGWCCY | 2 cut(s) | 222, 695 |
| Psp6I | CCWGG | 6 cut(s) | 285, 649, 827, 900, 909, 957 |
| PspFI | CCCAGC | 1 cut(s) | 236 |
| PspGI | CCWGG | 6 cut(s) | 285, 649, 827, 900, 909, 957 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 555, 567, 696, 697, 766 |
| PspPI | GGNCC | 6 cut(s) | 67, 222, 695, 805, 898, 916 |
| PspPPI | RGGWCCY | 2 cut(s) | 222, 695 |
| PstNI | CAGNNNCTG | 1 cut(s) | 292 |
| PsuI | RGATCY | 2 cut(s) | 245, 796 |
| PteI | GCGCGC | 1 cut(s) | 717 |
| RsaI | GTAC | 5 cut(s) | 183, 357, 633, 750, 822 |
| RsaNI | GTAC | 5 cut(s) | 182, 356, 632, 749, 821 |
| SaqAI | TTAA | 2 cut(s) | 149, 812 |
| Sau3AI | GATC | 7 cut(s) | 40, 88, 100, 130, 245, 415, 796 |
| Sau96I | GGNCC | 6 cut(s) | 67, 222, 695, 805, 898, 916 |
| SchI | GAGTC | 3 cut(s) | 14, 637, 778 |
| ScrFI | CCNGG | 7 cut(s) | 287, 651, 714, 829, 902, 911, 959 |
| SduI | GDGCHC | 1 cut(s) | 160 |
| SfaNI | GCATC | 3 cut(s) | 417, 655, 934 |
| Sfr274I | CTCGAG | 1 cut(s) | 560 |
| SgsI | GGCGCGCC | 1 cut(s) | 717 |
| SinI | GGWCC | 2 cut(s) | 222, 695 |
| SlaI | CTCGAG | 1 cut(s) | 560 |
| SmlI | CTYRAG | 3 cut(s) | 560, 888, 930 |
| SmoI | CTYRAG | 3 cut(s) | 560, 888, 930 |
| SnaBI | TACGTA | 1 cut(s) | 683 |
| Sse9I | AATT | 2 cut(s) | 51, 809 |
| SspMI | CTAG | 3 cut(s) | 137, 353, 669 |
| StyD4I | CCNGG | 7 cut(s) | 285, 649, 712, 827, 900, 909, 957 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| TaaI | ACNGT | 2 cut(s) | 189, 817 |
| TaiI | ACGT | 2 cut(s) | 504, 685 |
| TaqI | TCGA | 4 cut(s) | 392, 414, 480, 561 |
| TasI | AATT | 2 cut(s) | 51, 809 |
| TauI | GCSGC | 6 cut(s) | 59, 62, 497, 595, 872, 929 |
| TfiI | GAWTC | 5 cut(s) | 164, 389, 394, 466, 790 |
| Tru1I | TTAA | 2 cut(s) | 149, 812 |
| Tru9I | TTAA | 2 cut(s) | 149, 812 |
| TscAI | CASTG | 3 cut(s) | 165, 331, 778 |
| TseFI | GTSAC | 1 cut(s) | 640 |
| TseI | GCWGC | 7 cut(s) | 197, 254, 491, 575, 578, 935, 938 |
| Tsp45I | GTSAC | 1 cut(s) | 640 |
| TspDTI | ATGAA | 3 cut(s) | 132, 164, 978 |
| TspRI | CASTG | 3 cut(s) | 165, 331, 778 |
| VpaK11BI | GGWCC | 2 cut(s) | 222, 695 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 293, 955 |
| XhoI | CTCGAG | 1 cut(s) | 560 |
| XmiI | GTMKAC | 1 cut(s) | 679 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 3 cut(s) | 137, 353, 669 |