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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 37 |
| AccBSI | CCGCTC | 1 cut(s) | 164 |
| AccII | CGCG | 2 cut(s) | 250, 252 |
| AciI | CCGC | 5 cut(s) | 42, 162, 248, 252, 269 |
| AcoI | YGGCCR | 3 cut(s) | 132, 328, 403 |
| AcyI | GRCGYC | 1 cut(s) | 138 |
| AfeI | AGCGCT | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 20, 21, 168, 254, 383, 477 |
| AgsI | TTSAA | 1 cut(s) | 208 |
| AjnI | CCWGG | 1 cut(s) | 196 |
| Alw26I | GTCTC | 3 cut(s) | 55, 63, 114 |
| Aor51HI | AGCGCT | 1 cut(s) | 457 |
| AoxI | GGCC | 8 cut(s) | 106, 132, 154, 170, 328, 370, 403, 438 |
| ApaI | GGGCCC | 1 cut(s) | 110 |
| ApeKI | GCWGC | 2 cut(s) | 275, 453 |
| AspLEI | GCGC | 2 cut(s) | 252, 458 |
| AspS9I | GGNCC | 4 cut(s) | 106, 107, 171, 439 |
| AsuC2I | CCSGG | 2 cut(s) | 131, 500 |
| AsuHPI | GGTGA | 1 cut(s) | 258 |
| BaeGI | GKGCMC | 2 cut(s) | 42, 110 |
| BalI | TGGCCA | 2 cut(s) | 330, 405 |
| BanI | GGYRCC | 1 cut(s) | 37 |
| BanII | GRGCYC | 2 cut(s) | 110, 507 |
| BbsI | GAAGAC | 1 cut(s) | 236 |
| BbvI | GCAGC | 2 cut(s) | 262, 465 |
| BccI | CCATC | 3 cut(s) | 149, 371, 377 |
| BceAI | ACGGC | 1 cut(s) | 481 |
| BciT130I | CCWGG | 1 cut(s) | 198 |
| BcnI | CCSGG | 2 cut(s) | 131, 500 |
| BcoDI | GTCTC | 3 cut(s) | 55, 63, 114 |
| BfoI | RGCGCY | 1 cut(s) | 459 |
| BisI | GCNGC | 2 cut(s) | 276, 454 |
| BlsI | GCNGC | 2 cut(s) | 277, 455 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 198, 500 |
| BmgT120I | GGNCC | 4 cut(s) | 106, 107, 171, 439 |
| BmiI | GGNNCC | 5 cut(s) | 27, 39, 108, 469, 504 |
| BmrFI | CCNGG | 3 cut(s) | 131, 198, 500 |
| BmsI | GCATC | 1 cut(s) | 41 |
| BpiI | GAAGAC | 1 cut(s) | 236 |
| BpuMI | CCSGG | 2 cut(s) | 131, 500 |
| BsaHI | GRCGYC | 1 cut(s) | 138 |
| BsaI | GGTCTC | 1 cut(s) | 63 |
| BsaJI | CCNNGG | 3 cut(s) | 197, 435, 476 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 62, 92, 452, 482 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 20, 21, 168, 254, 383, 477 |
| Bse1I | ACTGG | 3 cut(s) | 179, 354, 373 |
| BseBI | CCWGG | 1 cut(s) | 198 |
| BseDI | CCNNGG | 3 cut(s) | 197, 435, 476 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 20, 21, 168, 254, 383, 477 |
| BseNI | ACTGG | 3 cut(s) | 179, 354, 373 |
| BseRI | GAGGAG | 2 cut(s) | 70, 73 |
| BseSI | GKGCMC | 2 cut(s) | 42, 110 |
| BseX3I | CGGCCG | 1 cut(s) | 132 |
| BseXI | GCAGC | 2 cut(s) | 262, 465 |
| BseYI | CCCAGC | 1 cut(s) | 109 |
| Bsh1236I | CGCG | 2 cut(s) | 250, 252 |
| Bsh1285I | CGRYCG | 2 cut(s) | 135, 451 |
| BshFI | GGCC | 8 cut(s) | 108, 134, 156, 172, 330, 372, 405, 440 |
| BshNI | GGYRCC | 1 cut(s) | 37 |
| BsiEI | CGRYCG | 2 cut(s) | 135, 451 |
| BsiSI | CCGG | 3 cut(s) | 99, 131, 499 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 20, 21, 168, 254, 383, 477 |
| BsmAI | GTCTC | 3 cut(s) | 55, 63, 114 |
| BsnI | GGCC | 8 cut(s) | 108, 134, 156, 172, 330, 372, 405, 440 |
| Bso31I | GGTCTC | 1 cut(s) | 63 |
| Bsp120I | GGGCCC | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 110, 507 |
| Bsp143I | GATC | 1 cut(s) | 229 |
| Bsp19I | CCATGG | 1 cut(s) | 435 |
| BspACI | CCGC | 5 cut(s) | 42, 162, 248, 252, 269 |
| BspANI | GGCC | 8 cut(s) | 108, 134, 156, 172, 330, 372, 405, 440 |
| BspFNI | CGCG | 2 cut(s) | 250, 252 |
| BspLI | GGNNCC | 5 cut(s) | 27, 39, 108, 469, 504 |
| BspT107I | GGYRCC | 1 cut(s) | 37 |
| BspTNI | GGTCTC | 1 cut(s) | 63 |
| BsrBI | CCGCTC | 1 cut(s) | 164 |
| BsrI | ACTGG | 3 cut(s) | 179, 354, 373 |
| BssECI | CCNNGG | 3 cut(s) | 197, 435, 476 |
| BssMI | GATC | 1 cut(s) | 229 |
| BssNI | GRCGYC | 1 cut(s) | 138 |
| BssT1I | CCWWGG | 1 cut(s) | 435 |
| Bst2UI | CCWGG | 1 cut(s) | 198 |
| Bst4CI | ACNGT | 3 cut(s) | 212, 449, 480 |
| BstACI | GRCGYC | 1 cut(s) | 138 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 5 cut(s) | 42, 158, 162, 273, 389 |
| BstDEI | CTNAG | 1 cut(s) | 532 |
| BstDSI | CCRYGG | 2 cut(s) | 435, 476 |
| BstFNI | CGCG | 2 cut(s) | 250, 252 |
| BstH2I | RGCGCY | 1 cut(s) | 459 |
| BstHHI | GCGC | 2 cut(s) | 252, 458 |
| BstKTI | GATC | 1 cut(s) | 232 |
| BstMAI | GTCTC | 3 cut(s) | 55, 63, 114 |
| BstMBI | GATC | 1 cut(s) | 229 |
| BstMCI | CGRYCG | 2 cut(s) | 135, 451 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 397 |
| BstNI | CCWGG | 1 cut(s) | 198 |
| BstSCI | CCNGG | 3 cut(s) | 129, 196, 498 |
| BstSLI | GKGCMC | 2 cut(s) | 42, 110 |
| BstUI | CGCG | 2 cut(s) | 250, 252 |
| BstV1I | GCAGC | 2 cut(s) | 262, 465 |
| BstV2I | GAAGAC | 1 cut(s) | 236 |
| BstZI | CGGCCG | 1 cut(s) | 132 |
| BsuRI | GGCC | 8 cut(s) | 108, 134, 156, 172, 330, 372, 405, 440 |
| BtgI | CCRYGG | 2 cut(s) | 435, 476 |
| BtgZI | GCGATG | 1 cut(s) | 127 |
| BtsI | GCAGTG | 1 cut(s) | 113 |
| BtsIMutI | CAGTG | 2 cut(s) | 113, 366 |
| Cac8I | GCNNGC | 5 cut(s) | 42, 158, 162, 273, 389 |
| CfoI | GCGC | 2 cut(s) | 252, 458 |
| Cfr13I | GGNCC | 4 cut(s) | 106, 107, 171, 439 |
| CseI | GACGC | 1 cut(s) | 146 |
| CviAII | CATG | 3 cut(s) | 95, 401, 436 |
| DdeI | CTNAG | 1 cut(s) | 532 |
| DpnI | GATC | 1 cut(s) | 231 |
| DpnII | GATC | 1 cut(s) | 229 |
| EaeI | YGGCCR | 3 cut(s) | 132, 328, 403 |
| EagI | CGGCCG | 1 cut(s) | 132 |
| EclXI | CGGCCG | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 1 cut(s) | 435 |
| Eco24I | GRGCYC | 2 cut(s) | 110, 507 |
| Eco31I | GGTCTC | 1 cut(s) | 63 |
| Eco47III | AGCGCT | 1 cut(s) | 457 |
| Eco52I | CGGCCG | 1 cut(s) | 132 |
| EcoRII | CCWGG | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 435 |
| EcoT38I | GRGCYC | 2 cut(s) | 110, 507 |
| ErhI | CCWWGG | 1 cut(s) | 435 |
| FaeI | CATG | 3 cut(s) | 98, 404, 439 |
| FaiI | YATR | 5 cut(s) | 76, 96, 153, 402, 437 |
| FatI | CATG | 3 cut(s) | 94, 400, 435 |
| FauI | CCCGC | 2 cut(s) | 49, 169 |
| Fnu4HI | GCNGC | 2 cut(s) | 276, 454 |
| FriOI | GRGCYC | 2 cut(s) | 110, 507 |
| Fsp4HI | GCNGC | 2 cut(s) | 276, 454 |
| GlaI | GCGC | 2 cut(s) | 251, 457 |
| GluI | GCNGC | 2 cut(s) | 276, 454 |
| GsaI | CCCAGC | 1 cut(s) | 113 |
| HaeII | RGCGCY | 1 cut(s) | 459 |
| HaeIII | GGCC | 8 cut(s) | 108, 134, 156, 172, 330, 372, 405, 440 |
| HapII | CCGG | 3 cut(s) | 99, 131, 499 |
| HgaI | GACGC | 1 cut(s) | 146 |
| HhaI | GCGC | 2 cut(s) | 252, 458 |
| Hin1I | GRCGYC | 1 cut(s) | 138 |
| Hin1II | CATG | 3 cut(s) | 98, 404, 439 |
| Hin6I | GCGC | 2 cut(s) | 250, 456 |
| HinP1I | GCGC | 2 cut(s) | 250, 456 |
| HinfI | GANTC | 3 cut(s) | 122, 193, 413 |
| HpaII | CCGG | 3 cut(s) | 99, 131, 499 |
| HphI | GGTGA | 1 cut(s) | 258 |
| Hpy166II | GTNNAC | 1 cut(s) | 266 |
| Hpy188I | TCNGA | 1 cut(s) | 188 |
| Hpy188III | TCNNGA | 1 cut(s) | 66 |
| Hpy8I | GTNNAC | 1 cut(s) | 266 |
| Hpy99I | CGWCG | 2 cut(s) | 140, 171 |
| HpyAV | CCTTC | 1 cut(s) | 183 |
| HpyCH4III | ACNGT | 3 cut(s) | 212, 449, 480 |
| HpyCH4V | TGCA | 2 cut(s) | 400, 512 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 397 |
| HpyF3I | CTNAG | 1 cut(s) | 532 |
| Hsp92I | GRCGYC | 1 cut(s) | 138 |
| Hsp92II | CATG | 3 cut(s) | 98, 404, 439 |
| HspAI | GCGC | 2 cut(s) | 250, 456 |
| Kzo9I | GATC | 1 cut(s) | 229 |
| LmnI | GCTCC | 2 cut(s) | 473, 502 |
| Lsp1109I | GCAGC | 2 cut(s) | 262, 465 |
| LweI | GCATC | 1 cut(s) | 41 |
| MaeIII | GTNAC | 1 cut(s) | 418 |
| MalI | GATC | 1 cut(s) | 231 |
| MbiI | CCGCTC | 1 cut(s) | 164 |
| MboI | GATC | 1 cut(s) | 229 |
| MboII | GAAGA | 1 cut(s) | 236 |
| MhlI | GDGCHC | 3 cut(s) | 42, 110, 507 |
| MlsI | TGGCCA | 2 cut(s) | 330, 405 |
| MluCI | AATT | 3 cut(s) | 323, 407, 522 |
| MluNI | TGGCCA | 2 cut(s) | 330, 405 |
| MlyI | GAGTC | 3 cut(s) | 116, 187, 407 |
| MnlI | CCTC | 3 cut(s) | 91, 94, 194 |
| Mox20I | TGGCCA | 2 cut(s) | 330, 405 |
| MscI | TGGCCA | 2 cut(s) | 330, 405 |
| MseI | TTAA | 1 cut(s) | 431 |
| Msp20I | TGGCCA | 2 cut(s) | 330, 405 |
| MspI | CCGG | 3 cut(s) | 99, 131, 499 |
| MspR9I | CCNGG | 3 cut(s) | 131, 198, 500 |
| MvaI | CCWGG | 1 cut(s) | 198 |
| MvnI | CGCG | 2 cut(s) | 250, 252 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 397 |
| NciI | CCSGG | 2 cut(s) | 131, 500 |
| NcoI | CCATGG | 1 cut(s) | 435 |
| NdeII | GATC | 1 cut(s) | 229 |
| NlaIII | CATG | 3 cut(s) | 98, 404, 439 |
| NlaIV | GGNNCC | 5 cut(s) | 27, 39, 108, 469, 504 |
| NmuCI | GTSAC | 1 cut(s) | 418 |
| PflFI | GACNNNGTC | 1 cut(s) | 416 |
| PkrI | GCNGC | 2 cut(s) | 277, 455 |
| PleI | GAGTC | 3 cut(s) | 116, 187, 407 |
| PpsI | GAGTC | 3 cut(s) | 116, 187, 407 |
| Psp6I | CCWGG | 1 cut(s) | 196 |
| PspFI | CCCAGC | 1 cut(s) | 109 |
| PspGI | CCWGG | 1 cut(s) | 196 |
| PspN4I | GGNNCC | 5 cut(s) | 27, 39, 108, 469, 504 |
| PspOMI | GGGCCC | 1 cut(s) | 106 |
| PspPI | GGNCC | 4 cut(s) | 106, 107, 171, 439 |
| PsyI | GACNNNGTC | 1 cut(s) | 416 |
| SaqAI | TTAA | 1 cut(s) | 431 |
| SatI | GCNGC | 2 cut(s) | 276, 454 |
| Sau3AI | GATC | 1 cut(s) | 229 |
| Sau96I | GGNCC | 4 cut(s) | 106, 107, 171, 439 |
| SchI | GAGTC | 3 cut(s) | 116, 187, 407 |
| ScrFI | CCNGG | 3 cut(s) | 131, 198, 500 |
| SduI | GDGCHC | 3 cut(s) | 42, 110, 507 |
| SetI | ASST | 2 cut(s) | 11, 314 |
| SfaNI | GCATC | 1 cut(s) | 41 |
| Sse9I | AATT | 3 cut(s) | 323, 407, 522 |
| SsiI | CCGC | 5 cut(s) | 42, 162, 248, 252, 269 |
| StyD4I | CCNGG | 3 cut(s) | 129, 196, 498 |
| StyI | CCWWGG | 1 cut(s) | 435 |
| TaaI | ACNGT | 3 cut(s) | 212, 449, 480 |
| TaqI | TCGA | 2 cut(s) | 228, 411 |
| TasI | AATT | 3 cut(s) | 323, 407, 522 |
| Tru1I | TTAA | 1 cut(s) | 431 |
| Tru9I | TTAA | 1 cut(s) | 431 |
| TscAI | CASTG | 2 cut(s) | 120, 373 |
| TseFI | GTSAC | 1 cut(s) | 418 |
| TseI | GCWGC | 2 cut(s) | 275, 453 |
| Tsp45I | GTSAC | 1 cut(s) | 418 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 534 |
| TspRI | CASTG | 2 cut(s) | 120, 373 |
| Tth111I | GACNNNGTC | 1 cut(s) | 416 |