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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 320 |
| Acc65I | GGTACC | 1 cut(s) | 287 |
| AccB1I | GGYRCC | 2 cut(s) | 287, 461 |
| AccBSI | CCGCTC | 1 cut(s) | 391 |
| AccII | CGCG | 3 cut(s) | 370, 372, 574 |
| AciI | CCGC | 3 cut(s) | 372, 389, 394 |
| AclWI | GGATC | 4 cut(s) | 114, 302, 525, 538 |
| AcoI | YGGCCR | 1 cut(s) | 255 |
| AcyI | GRCGYC | 2 cut(s) | 143, 462 |
| AfaI | GTAC | 1 cut(s) | 289 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 20, 21, 458 |
| AflIII | ACRYGT | 1 cut(s) | 99 |
| AgsI | TTSAA | 2 cut(s) | 212, 549 |
| AhlI | ACTAGT | 1 cut(s) | 509 |
| AluBI | AGCT | 1 cut(s) | 280 |
| AluI | AGCT | 1 cut(s) | 280 |
| Alw26I | GTCTC | 1 cut(s) | 500 |
| AlwI | GGATC | 4 cut(s) | 114, 302, 525, 538 |
| Ama87I | CYCGRG | 2 cut(s) | 135, 443 |
| AoxI | GGCC | 6 cut(s) | 111, 149, 159, 175, 255, 519 |
| ApaI | GGGCCC | 1 cut(s) | 115 |
| ApeKI | GCWGC | 2 cut(s) | 10, 273 |
| Asp718I | GGTACC | 1 cut(s) | 287 |
| AspLEI | GCGC | 4 cut(s) | 225, 273, 372, 464 |
| AspS9I | GGNCC | 4 cut(s) | 111, 112, 186, 520 |
| AsuC2I | CCSGG | 2 cut(s) | 184, 203 |
| AsuHPI | GGTGA | 2 cut(s) | 110, 378 |
| AvaI | CYCGRG | 2 cut(s) | 135, 443 |
| AvaII | GGWCC | 1 cut(s) | 186 |
| BaeGI | GKGCMC | 1 cut(s) | 115 |
| BamHI | GGATCC | 1 cut(s) | 530 |
| BanI | GGYRCC | 2 cut(s) | 287, 461 |
| BanII | GRGCYC | 2 cut(s) | 115, 444 |
| BauI | CACGAG | 1 cut(s) | 122 |
| BbvI | GCAGC | 1 cut(s) | 285 |
| BccI | CCATC | 2 cut(s) | 123, 266 |
| BceAI | ACGGC | 2 cut(s) | 270, 342 |
| BcnI | CCSGG | 2 cut(s) | 184, 203 |
| BcoDI | GTCTC | 1 cut(s) | 500 |
| BcuI | ACTAGT | 1 cut(s) | 509 |
| BfaI | CTAG | 2 cut(s) | 408, 510 |
| BfoI | RGCGCY | 2 cut(s) | 226, 465 |
| BfuAI | ACCTGC | 1 cut(s) | 320 |
| BisI | GCNGC | 2 cut(s) | 11, 274 |
| BlsI | GCNGC | 2 cut(s) | 12, 275 |
| Bme1390I | CCNGG | 2 cut(s) | 184, 203 |
| Bme18I | GGWCC | 1 cut(s) | 186 |
| BmeT110I | CYCGRG | 2 cut(s) | 135, 443 |
| BmgT120I | GGNCC | 4 cut(s) | 111, 112, 186, 520 |
| BmiI | GGNNCC | 5 cut(s) | 27, 113, 289, 463, 532 |
| BmrFI | CCNGG | 2 cut(s) | 184, 203 |
| BmsI | GCATC | 2 cut(s) | 27, 505 |
| BpuMI | CCSGG | 2 cut(s) | 184, 203 |
| Bsa29I | ATCGAT | 1 cut(s) | 35 |
| BsaHI | GRCGYC | 2 cut(s) | 143, 462 |
| BsaJI | CCNNGG | 2 cut(s) | 146, 202 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 62, 92 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 20, 21, 458 |
| BseCI | ATCGAT | 1 cut(s) | 35 |
| BseDI | CCNNGG | 2 cut(s) | 146, 202 |
| BseGI | GGATG | 2 cut(s) | 258, 496 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 20, 21, 458 |
| BseRI | GAGGAG | 1 cut(s) | 70 |
| BseSI | GKGCMC | 1 cut(s) | 115 |
| BseXI | GCAGC | 1 cut(s) | 285 |
| Bsh1236I | CGCG | 3 cut(s) | 370, 372, 574 |
| BshFI | GGCC | 6 cut(s) | 113, 151, 161, 177, 257, 521 |
| BshNI | GGYRCC | 2 cut(s) | 287, 461 |
| BshVI | ATCGAT | 1 cut(s) | 35 |
| BsiHKCI | CYCGRG | 2 cut(s) | 135, 443 |
| BsiSI | CCGG | 3 cut(s) | 184, 202, 311 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 20, 21, 458 |
| BsmAI | GTCTC | 1 cut(s) | 500 |
| BsnI | GGCC | 6 cut(s) | 113, 151, 161, 177, 257, 521 |
| BsoBI | CYCGRG | 2 cut(s) | 135, 443 |
| Bsp120I | GGGCCC | 1 cut(s) | 111 |
| Bsp1286I | GDGCHC | 2 cut(s) | 115, 444 |
| Bsp143I | GATC | 4 cut(s) | 106, 307, 349, 530 |
| Bsp19I | CCATGG | 1 cut(s) | 146 |
| Bsp68I | TCGCGA | 1 cut(s) | 574 |
| BspACI | CCGC | 3 cut(s) | 372, 389, 394 |
| BspANI | GGCC | 6 cut(s) | 113, 151, 161, 177, 257, 521 |
| BspDI | ATCGAT | 1 cut(s) | 35 |
| BspFNI | CGCG | 3 cut(s) | 370, 372, 574 |
| BspLI | GGNNCC | 5 cut(s) | 27, 113, 289, 463, 532 |
| BspMI | ACCTGC | 1 cut(s) | 320 |
| BspPI | GGATC | 4 cut(s) | 114, 302, 525, 538 |
| BspQI | GCTCTTC | 1 cut(s) | 288 |
| BspT107I | GGYRCC | 2 cut(s) | 287, 461 |
| BsrBI | CCGCTC | 1 cut(s) | 391 |
| BssECI | CCNNGG | 2 cut(s) | 146, 202 |
| BssMI | GATC | 4 cut(s) | 106, 307, 349, 530 |
| BssNI | GRCGYC | 2 cut(s) | 143, 462 |
| BssSI | CACGAG | 1 cut(s) | 122 |
| BssT1I | CCWWGG | 1 cut(s) | 146 |
| Bst2BI | CACGAG | 1 cut(s) | 122 |
| Bst4CI | ACNGT | 2 cut(s) | 216, 434 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstACI | GRCGYC | 2 cut(s) | 143, 462 |
| BstC8I | GCNNGC | 4 cut(s) | 163, 278, 300, 316 |
| BstDEI | CTNAG | 1 cut(s) | 226 |
| BstDSI | CCRYGG | 1 cut(s) | 146 |
| BstF5I | GGATG | 2 cut(s) | 258, 496 |
| BstFNI | CGCG | 3 cut(s) | 370, 372, 574 |
| BstH2I | RGCGCY | 2 cut(s) | 226, 465 |
| BstHHI | GCGC | 4 cut(s) | 225, 273, 372, 464 |
| BstKTI | GATC | 4 cut(s) | 109, 310, 352, 533 |
| BstMAI | GTCTC | 1 cut(s) | 500 |
| BstMBI | GATC | 4 cut(s) | 106, 307, 349, 530 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 277 |
| BstNSI | RCATGY | 1 cut(s) | 103 |
| BstSCI | CCNGG | 2 cut(s) | 182, 201 |
| BstSLI | GKGCMC | 1 cut(s) | 115 |
| BstUI | CGCG | 3 cut(s) | 370, 372, 574 |
| BstV1I | GCAGC | 1 cut(s) | 285 |
| BstX2I | RGATCY | 2 cut(s) | 307, 530 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 437 |
| BstYI | RGATCY | 2 cut(s) | 307, 530 |
| Bsu15I | ATCGAT | 1 cut(s) | 35 |
| BsuRI | GGCC | 6 cut(s) | 113, 151, 161, 177, 257, 521 |
| BsuTUI | ATCGAT | 1 cut(s) | 35 |
| BtgI | CCRYGG | 1 cut(s) | 146 |
| BtsCI | GGATG | 2 cut(s) | 258, 496 |
| BtuMI | TCGCGA | 1 cut(s) | 574 |
| BveI | ACCTGC | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 4 cut(s) | 163, 278, 300, 316 |
| CfoI | GCGC | 4 cut(s) | 225, 273, 372, 464 |
| Cfr13I | GGNCC | 4 cut(s) | 111, 112, 186, 520 |
| ClaI | ATCGAT | 1 cut(s) | 35 |
| CseI | GACGC | 1 cut(s) | 151 |
| Csp6I | GTAC | 1 cut(s) | 288 |
| CviAII | CATG | 2 cut(s) | 100, 147 |
| CviQI | GTAC | 1 cut(s) | 288 |
| DdeI | CTNAG | 1 cut(s) | 226 |
| DinI | GGCGCC | 1 cut(s) | 463 |
| DpnI | GATC | 4 cut(s) | 108, 309, 351, 532 |
| DpnII | GATC | 4 cut(s) | 106, 307, 349, 530 |
| EaeI | YGGCCR | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 1 cut(s) | 146 |
| Eco24I | GRGCYC | 2 cut(s) | 115, 444 |
| Eco47I | GGWCC | 1 cut(s) | 186 |
| Eco88I | CYCGRG | 2 cut(s) | 135, 443 |
| EcoT14I | CCWWGG | 1 cut(s) | 146 |
| EcoT22I | ATGCAT | 1 cut(s) | 498 |
| EcoT38I | GRGCYC | 2 cut(s) | 115, 444 |
| EgeI | GGCGCC | 1 cut(s) | 463 |
| EheI | GGCGCC | 1 cut(s) | 463 |
| ErhI | CCWWGG | 1 cut(s) | 146 |
| FaeI | CATG | 2 cut(s) | 103, 150 |
| FaiI | YATR | 7 cut(s) | 101, 148, 158, 342, 481, 494, 563 |
| FatI | CATG | 2 cut(s) | 99, 146 |
| Fnu4HI | GCNGC | 2 cut(s) | 11, 274 |
| FokI | GGATG | 2 cut(s) | 245, 483 |
| FriOI | GRGCYC | 2 cut(s) | 115, 444 |
| Fsp4HI | GCNGC | 2 cut(s) | 11, 274 |
| FspBI | CTAG | 2 cut(s) | 408, 510 |
| GlaI | GCGC | 4 cut(s) | 224, 272, 371, 463 |
| GluI | GCNGC | 2 cut(s) | 11, 274 |
| HaeII | RGCGCY | 2 cut(s) | 226, 465 |
| HaeIII | GGCC | 6 cut(s) | 113, 151, 161, 177, 257, 521 |
| HapII | CCGG | 3 cut(s) | 184, 202, 311 |
| HgaI | GACGC | 1 cut(s) | 151 |
| HhaI | GCGC | 4 cut(s) | 225, 273, 372, 464 |
| Hin1I | GRCGYC | 2 cut(s) | 143, 462 |
| Hin1II | CATG | 2 cut(s) | 103, 150 |
| Hin6I | GCGC | 4 cut(s) | 223, 271, 370, 462 |
| HinP1I | GCGC | 4 cut(s) | 223, 271, 370, 462 |
| HinfI | GANTC | 5 cut(s) | 127, 198, 230, 401, 545 |
| HpaII | CCGG | 3 cut(s) | 184, 202, 311 |
| HphI | GGTGA | 2 cut(s) | 110, 378 |
| Hpy166II | GTNNAC | 1 cut(s) | 386 |
| Hpy188I | TCNGA | 3 cut(s) | 106, 193, 544 |
| Hpy188III | TCNNGA | 2 cut(s) | 135, 573 |
| Hpy8I | GTNNAC | 1 cut(s) | 386 |
| Hpy99I | CGWCG | 2 cut(s) | 145, 574 |
| HpyAV | CCTTC | 2 cut(s) | 162, 188 |
| HpyCH4III | ACNGT | 2 cut(s) | 216, 434 |
| HpyCH4IV | ACGT | 1 cut(s) | 552 |
| HpyCH4V | TGCA | 1 cut(s) | 496 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 277 |
| HpyF3I | CTNAG | 1 cut(s) | 226 |
| HpySE526I | ACGT | 1 cut(s) | 552 |
| Hsp92I | GRCGYC | 2 cut(s) | 143, 462 |
| Hsp92II | CATG | 2 cut(s) | 103, 150 |
| HspAI | GCGC | 4 cut(s) | 223, 271, 370, 462 |
| KasI | GGCGCC | 1 cut(s) | 461 |
| KpnI | GGTACC | 1 cut(s) | 291 |
| Kzo9I | GATC | 4 cut(s) | 106, 307, 349, 530 |
| LguI | GCTCTTC | 1 cut(s) | 288 |
| LmnI | GCTCC | 1 cut(s) | 396 |
| LpnPI | CCDG | 7 cut(s) | 175, 197, 215, 270, 304, 315, 324 |
| Lsp1109I | GCAGC | 1 cut(s) | 285 |
| LweI | GCATC | 2 cut(s) | 27, 505 |
| MaeI | CTAG | 2 cut(s) | 408, 510 |
| MaeII | ACGT | 1 cut(s) | 552 |
| MalI | GATC | 4 cut(s) | 108, 309, 351, 532 |
| MbiI | CCGCTC | 1 cut(s) | 391 |
| MboI | GATC | 4 cut(s) | 106, 307, 349, 530 |
| MboII | GAAGA | 1 cut(s) | 305 |
| MflI | RGATCY | 2 cut(s) | 307, 530 |
| MhlI | GDGCHC | 2 cut(s) | 115, 444 |
| MluCI | AATT | 1 cut(s) | 85 |
| Mly113I | GGCGCC | 1 cut(s) | 462 |
| MlyI | GAGTC | 1 cut(s) | 395 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MnlI | CCTC | 5 cut(s) | 91, 199, 272, 428, 476 |
| Mph1103I | ATGCAT | 1 cut(s) | 498 |
| MspI | CCGG | 3 cut(s) | 184, 202, 311 |
| MspR9I | CCNGG | 2 cut(s) | 184, 203 |
| MvnI | CGCG | 3 cut(s) | 370, 372, 574 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 277 |
| NarI | GGCGCC | 1 cut(s) | 462 |
| NciI | CCSGG | 2 cut(s) | 184, 203 |
| NcoI | CCATGG | 1 cut(s) | 146 |
| NdeII | GATC | 4 cut(s) | 106, 307, 349, 530 |
| NlaIII | CATG | 2 cut(s) | 103, 150 |
| NlaIV | GGNNCC | 5 cut(s) | 27, 113, 289, 463, 532 |
| NmeAIII | GCCGAG | 1 cut(s) | 497 |
| NruI | TCGCGA | 1 cut(s) | 574 |
| NsiI | ATGCAT | 1 cut(s) | 498 |
| NspI | RCATGY | 1 cut(s) | 103 |
| PciI | ACATGT | 1 cut(s) | 99 |
| PciSI | GCTCTTC | 1 cut(s) | 288 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 450 |
| PfeI | GAWTC | 4 cut(s) | 127, 198, 230, 545 |
| PkrI | GCNGC | 2 cut(s) | 12, 275 |
| PleI | GAGTC | 1 cut(s) | 395 |
| PluTI | GGCGCC | 1 cut(s) | 465 |
| PpsI | GAGTC | 1 cut(s) | 395 |
| PscI | ACATGT | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 5 cut(s) | 27, 113, 289, 463, 532 |
| PspOMI | GGGCCC | 1 cut(s) | 111 |
| PspPI | GGNCC | 4 cut(s) | 111, 112, 186, 520 |
| PsuI | RGATCY | 2 cut(s) | 307, 530 |
| RruI | TCGCGA | 1 cut(s) | 574 |
| RsaI | GTAC | 1 cut(s) | 289 |
| RsaNI | GTAC | 1 cut(s) | 288 |
| SapI | GCTCTTC | 1 cut(s) | 288 |
| SatI | GCNGC | 2 cut(s) | 11, 274 |
| Sau3AI | GATC | 4 cut(s) | 106, 307, 349, 530 |
| Sau96I | GGNCC | 4 cut(s) | 111, 112, 186, 520 |
| SchI | GAGTC | 1 cut(s) | 395 |
| ScrFI | CCNGG | 2 cut(s) | 184, 203 |
| SduI | GDGCHC | 2 cut(s) | 115, 444 |
| SetI | ASST | 4 cut(s) | 75, 282, 334, 555 |
| SfaNI | GCATC | 2 cut(s) | 27, 505 |
| SfoI | GGCGCC | 1 cut(s) | 463 |
| SinI | GGWCC | 1 cut(s) | 186 |
| SpeI | ACTAGT | 1 cut(s) | 509 |
| Sse9I | AATT | 1 cut(s) | 85 |
| SsiI | CCGC | 3 cut(s) | 372, 389, 394 |
| SspDI | GGCGCC | 1 cut(s) | 461 |
| SspMI | CTAG | 2 cut(s) | 408, 510 |
| StyD4I | CCNGG | 2 cut(s) | 182, 201 |
| StyI | CCWWGG | 1 cut(s) | 146 |
| TaaI | ACNGT | 2 cut(s) | 216, 434 |
| TaiI | ACGT | 1 cut(s) | 555 |
| TaqI | TCGA | 2 cut(s) | 35, 236 |
| TasI | AATT | 1 cut(s) | 85 |
| TfiI | GAWTC | 4 cut(s) | 127, 198, 230, 545 |
| TseI | GCWGC | 2 cut(s) | 10, 273 |
| TspDTI | ATGAA | 2 cut(s) | 17, 37 |
| VpaK11BI | GGWCC | 1 cut(s) | 186 |
| XceI | RCATGY | 1 cut(s) | 103 |
| XspI | CTAG | 2 cut(s) | 408, 510 |
| Zsp2I | ATGCAT | 1 cut(s) | 498 |