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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1347 |
| Acc36I | ACCTGC | 2 cut(s) | 832, 1507 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 488 |
| AccBSI | CCGCTC | 1 cut(s) | 1249 |
| AccIII | TCCGGA | 1 cut(s) | 889 |
| AclWI | GGATC | 2 cut(s) | 65, 1073 |
| AcoI | YGGCCR | 3 cut(s) | 106, 490, 516 |
| AcuI | CTGAAG | 4 cut(s) | 255, 582, 588, 1631 |
| AcyI | GRCGYC | 1 cut(s) | 219 |
| AfaI | GTAC | 2 cut(s) | 955, 1287 |
| AfeI | AGCGCT | 1 cut(s) | 508 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 430, 469, 470, 488, 1213, 1597 |
| AgeI | ACCGGT | 1 cut(s) | 412 |
| AgsI | TTSAA | 2 cut(s) | 50, 1139 |
| AjnI | CCWGG | 5 cut(s) | 64, 96, 513, 1262, 1303 |
| Alw21I | GWGCWC | 2 cut(s) | 552, 1387 |
| Alw26I | GTCTC | 4 cut(s) | 242, 271, 1550, 1758 |
| AlwI | GGATC | 2 cut(s) | 65, 1073 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 560 |
| Ama87I | CYCGRG | 1 cut(s) | 1250 |
| Aor13HI | TCCGGA | 1 cut(s) | 889 |
| Aor51HI | AGCGCT | 1 cut(s) | 508 |
| AoxI | GGCC | 9 cut(s) | 106, 490, 516, 1431, 1537, 1650, 1671, 1692, 1858 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 287, 319 |
| AseI | ATTAAT | 1 cut(s) | 1482 |
| AsiGI | ACCGGT | 1 cut(s) | 412 |
| AspLEI | GCGC | 7 cut(s) | 92, 481, 509, 630, 1373, 1375, 1507 |
| AspS9I | GGNCC | 7 cut(s) | 433, 691, 1349, 1629, 1651, 1672, 1693 |
| AsuC2I | CCSGG | 1 cut(s) | 431 |
| AsuHPI | GGTGA | 4 cut(s) | 680, 1417, 1432, 1699 |
| AsuII | TTCGAA | 1 cut(s) | 1743 |
| AvaI | CYCGRG | 1 cut(s) | 1250 |
| AvaII | GGWCC | 4 cut(s) | 433, 691, 1349, 1629 |
| AxyI | CCTNAGG | 1 cut(s) | 582 |
| BalI | TGGCCA | 1 cut(s) | 492 |
| BanII | GRGCYC | 2 cut(s) | 424, 1387 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 688, 720 |
| BauI | CACGAG | 2 cut(s) | 933, 1640 |
| BbsI | GAAGAC | 1 cut(s) | 696 |
| Bbv12I | GWGCWC | 2 cut(s) | 552, 1387 |
| BbvCI | CCTCAGC | 1 cut(s) | 326 |
| BccI | CCATC | 8 cut(s) | 46, 221, 221, 611, 1193, 1322, 1393, 1430 |
| BceAI | ACGGC | 4 cut(s) | 125, 206, 618, 1707 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 149, 183, 287, 321, 802, 836 |
| BciT130I | CCWGG | 5 cut(s) | 66, 98, 515, 1264, 1305 |
| BciVI | GTATCC | 1 cut(s) | 236 |
| BcnI | CCSGG | 1 cut(s) | 431 |
| BcoDI | GTCTC | 4 cut(s) | 242, 271, 1550, 1758 |
| BfaI | CTAG | 7 cut(s) | 531, 783, 1091, 1367, 1512, 1721, 1815 |
| BfmI | CTRYAG | 1 cut(s) | 1334 |
| BfoI | RGCGCY | 1 cut(s) | 510 |
| BfuAI | ACCTGC | 2 cut(s) | 832, 1507 |
| BfuI | GTATCC | 1 cut(s) | 236 |
| Bme1390I | CCNGG | 6 cut(s) | 66, 98, 431, 515, 1264, 1305 |
| Bme18I | GGWCC | 4 cut(s) | 433, 691, 1349, 1629 |
| BmeT110I | CYCGRG | 1 cut(s) | 1250 |
| BmgT120I | GGNCC | 7 cut(s) | 433, 691, 1349, 1629, 1651, 1672, 1693 |
| BmiI | GGNNCC | 6 cut(s) | 332, 831, 909, 1170, 1350, 1713 |
| BmrFI | CCNGG | 6 cut(s) | 66, 98, 431, 515, 1264, 1305 |
| BmrI | ACTGGG | 1 cut(s) | 1669 |
| BmsI | GCATC | 7 cut(s) | 138, 345, 367, 883, 905, 1009, 1222 |
| BmuI | ACTGGG | 1 cut(s) | 1669 |
| BpiI | GAAGAC | 1 cut(s) | 696 |
| BpmI | CTGGAG | 2 cut(s) | 450, 1289 |
| Bpu10I | CCTNAGC | 4 cut(s) | 124, 326, 864, 1386 |
| Bpu14I | TTCGAA | 1 cut(s) | 1743 |
| BpuEI | CTTGAG | 4 cut(s) | 1098, 1182, 1721, 1752 |
| BpuMI | CCSGG | 1 cut(s) | 431 |
| Bsa29I | ATCGAT | 1 cut(s) | 685 |
| BsaBI | GATNNNNATC | 1 cut(s) | 37 |
| BsaHI | GRCGYC | 1 cut(s) | 219 |
| BsaI | GGTCTC | 1 cut(s) | 271 |
| BsaJI | CCNNGG | 5 cut(s) | 222, 513, 656, 1428, 1540 |
| BsaWI | WCCGGW | 4 cut(s) | 412, 889, 941, 1165 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 430, 469, 470, 488, 1213, 1597 |
| Bse118I | RCCGGY | 1 cut(s) | 412 |
| Bse1I | ACTGG | 2 cut(s) | 190, 1675 |
| Bse21I | CCTNAGG | 1 cut(s) | 582 |
| Bse3DI | GCAATG | 1 cut(s) | 1755 |
| Bse8I | GATNNNNATC | 1 cut(s) | 37 |
| BseAI | TCCGGA | 1 cut(s) | 889 |
| BseBI | CCWGG | 5 cut(s) | 66, 98, 515, 1264, 1305 |
| BseCI | ATCGAT | 1 cut(s) | 685 |
| BseDI | CCNNGG | 5 cut(s) | 222, 513, 656, 1428, 1540 |
| BseGI | GGATG | 6 cut(s) | 232, 382, 898, 1300, 1333, 1834 |
| BseJI | GATNNNNATC | 1 cut(s) | 37 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 430, 469, 470, 488, 1213, 1597 |
| BseMI | GCAATG | 1 cut(s) | 1755 |
| BseNI | ACTGG | 2 cut(s) | 190, 1675 |
| BsePI | GCGCGC | 1 cut(s) | 1371 |
| BseRI | GAGGAG | 1 cut(s) | 920 |
| BseX3I | CGGCCG | 1 cut(s) | 106 |
| BseYI | CCCAGC | 3 cut(s) | 390, 716, 1148 |
| BsgI | GTGCAG | 3 cut(s) | 860, 900, 903 |
| Bsh1285I | CGRYCG | 5 cut(s) | 88, 109, 946, 1477, 1503 |
| BshFI | GGCC | 9 cut(s) | 108, 492, 518, 1433, 1539, 1652, 1673, 1694, 1860 |
| BshTI | ACCGGT | 1 cut(s) | 412 |
| BshVI | ATCGAT | 1 cut(s) | 685 |
| BsiEI | CGRYCG | 5 cut(s) | 88, 109, 946, 1477, 1503 |
| BsiHKAI | GWGCWC | 2 cut(s) | 552, 1387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1250 |
| BsiSI | CCGG | 6 cut(s) | 401, 413, 431, 890, 942, 1166 |
| BslFI | GGGAC | 2 cut(s) | 1190, 1613 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 430, 469, 470, 488, 1213, 1597 |
| BsmAI | GTCTC | 4 cut(s) | 242, 271, 1550, 1758 |
| BsmFI | GGGAC | 2 cut(s) | 1190, 1613 |
| BsnI | GGCC | 9 cut(s) | 108, 492, 518, 1433, 1539, 1652, 1673, 1694, 1860 |
| Bso31I | GGTCTC | 1 cut(s) | 271 |
| BsoBI | CYCGRG | 1 cut(s) | 1250 |
| Bsp119I | TTCGAA | 1 cut(s) | 1743 |
| Bsp1286I | GDGCHC | 3 cut(s) | 424, 552, 1387 |
| Bsp13I | TCCGGA | 1 cut(s) | 889 |
| Bsp143I | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| Bsp19I | CCATGG | 1 cut(s) | 656 |
| Bsp68I | TCGCGA | 2 cut(s) | 456, 1566 |
| BspANI | GGCC | 9 cut(s) | 108, 492, 518, 1433, 1539, 1652, 1673, 1694, 1860 |
| BspDI | ATCGAT | 1 cut(s) | 685 |
| BspEI | TCCGGA | 1 cut(s) | 889 |
| BspLI | GGNNCC | 6 cut(s) | 332, 831, 909, 1170, 1350, 1713 |
| BspMI | ACCTGC | 2 cut(s) | 832, 1507 |
| BspPI | GGATC | 2 cut(s) | 65, 1073 |
| BspQI | GCTCTTC | 1 cut(s) | 733 |
| BspT104I | TTCGAA | 1 cut(s) | 1743 |
| BspTNI | GGTCTC | 1 cut(s) | 271 |
| BsrBI | CCGCTC | 1 cut(s) | 1249 |
| BsrDI | GCAATG | 1 cut(s) | 1755 |
| BsrFI | RCCGGY | 1 cut(s) | 412 |
| BsrI | ACTGG | 2 cut(s) | 190, 1675 |
| BssAI | RCCGGY | 1 cut(s) | 412 |
| BssECI | CCNNGG | 5 cut(s) | 222, 513, 656, 1428, 1540 |
| BssHII | GCGCGC | 1 cut(s) | 1371 |
| BssMI | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| BssNI | GRCGYC | 1 cut(s) | 219 |
| BssSI | CACGAG | 2 cut(s) | 933, 1640 |
| BssT1I | CCWWGG | 2 cut(s) | 656, 1540 |
| Bst2BI | CACGAG | 2 cut(s) | 933, 1640 |
| Bst2UI | CCWGG | 5 cut(s) | 66, 98, 515, 1264, 1305 |
| Bst4CI | ACNGT | 1 cut(s) | 1060 |
| Bst6I | CTCTTC | 5 cut(s) | 255, 320, 402, 657, 733 |
| BstACI | GRCGYC | 1 cut(s) | 219 |
| BstBI | TTCGAA | 1 cut(s) | 1743 |
| BstDSI | CCRYGG | 2 cut(s) | 222, 656 |
| BstF5I | GGATG | 6 cut(s) | 232, 382, 898, 1300, 1333, 1834 |
| BstH2I | RGCGCY | 1 cut(s) | 510 |
| BstHHI | GCGC | 7 cut(s) | 92, 481, 509, 630, 1373, 1375, 1507 |
| BstKTI | GATC | 6 cut(s) | 73, 88, 685, 1081, 1090, 1477 |
| BstMAI | GTCTC | 4 cut(s) | 242, 271, 1550, 1758 |
| BstMBI | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| BstMCI | CGRYCG | 5 cut(s) | 88, 109, 946, 1477, 1503 |
| BstNI | CCWGG | 5 cut(s) | 66, 98, 515, 1264, 1305 |
| BstNSI | RCATGY | 1 cut(s) | 716 |
| BstSCI | CCNGG | 6 cut(s) | 64, 96, 429, 513, 1262, 1303 |
| BstSFI | CTRYAG | 1 cut(s) | 1334 |
| BstV2I | GAAGAC | 1 cut(s) | 696 |
| BstZI | CGGCCG | 1 cut(s) | 106 |
| Bsu15I | ATCGAT | 1 cut(s) | 685 |
| Bsu36I | CCTNAGG | 1 cut(s) | 582 |
| BsuI | GTATCC | 1 cut(s) | 236 |
| BsuRI | GGCC | 9 cut(s) | 108, 492, 518, 1433, 1539, 1652, 1673, 1694, 1860 |
| BsuTUI | ATCGAT | 1 cut(s) | 685 |
| BtgI | CCRYGG | 2 cut(s) | 222, 656 |
| BtgZI | GCGATG | 1 cut(s) | 589 |
| BtsCI | GGATG | 6 cut(s) | 232, 382, 898, 1300, 1333, 1834 |
| BtsIMutI | CAGTG | 2 cut(s) | 648, 1227 |
| BtuMI | TCGCGA | 2 cut(s) | 456, 1566 |
| BveI | ACCTGC | 2 cut(s) | 832, 1507 |
| CaiI | CAGNNNCTG | 1 cut(s) | 560 |
| CfoI | GCGC | 7 cut(s) | 92, 481, 509, 630, 1373, 1375, 1507 |
| Cfr10I | RCCGGY | 1 cut(s) | 412 |
| Cfr13I | GGNCC | 7 cut(s) | 433, 691, 1349, 1629, 1651, 1672, 1693 |
| ClaI | ATCGAT | 1 cut(s) | 685 |
| CpoI | CGGWCCG | 1 cut(s) | 1629 |
| CseI | GACGC | 2 cut(s) | 227, 1820 |
| Csp6I | GTAC | 2 cut(s) | 954, 1286 |
| CspAI | ACCGGT | 1 cut(s) | 412 |
| CspI | CGGWCCG | 1 cut(s) | 1629 |
| CviAII | CATG | 3 cut(s) | 657, 713, 1853 |
| CviQI | GTAC | 2 cut(s) | 954, 1286 |
| DpnI | GATC | 6 cut(s) | 72, 87, 684, 1080, 1089, 1476 |
| DpnII | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1347 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1347 |
| EaeI | YGGCCR | 3 cut(s) | 106, 490, 516 |
| EagI | CGGCCG | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 5 cut(s) | 255, 320, 402, 657, 733 |
| EarI | CTCTTC | 5 cut(s) | 255, 320, 402, 657, 733 |
| Ecl136II | GAGCTC | 1 cut(s) | 1385 |
| EclXI | CGGCCG | 1 cut(s) | 106 |
| Eco130I | CCWWGG | 2 cut(s) | 656, 1540 |
| Eco147I | AGGCCT | 1 cut(s) | 1539 |
| Eco24I | GRGCYC | 2 cut(s) | 424, 1387 |
| Eco31I | GGTCTC | 1 cut(s) | 271 |
| Eco47I | GGWCC | 4 cut(s) | 433, 691, 1349, 1629 |
| Eco47III | AGCGCT | 1 cut(s) | 508 |
| Eco52I | CGGCCG | 1 cut(s) | 106 |
| Eco53kI | GAGCTC | 1 cut(s) | 1385 |
| Eco57I | CTGAAG | 4 cut(s) | 255, 582, 588, 1631 |
| Eco81I | CCTNAGG | 1 cut(s) | 582 |
| Eco88I | CYCGRG | 1 cut(s) | 1250 |
| EcoICRI | GAGCTC | 1 cut(s) | 1385 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1349 |
| EcoRII | CCWGG | 5 cut(s) | 64, 96, 513, 1262, 1303 |
| EcoT14I | CCWWGG | 2 cut(s) | 656, 1540 |
| EcoT22I | ATGCAT | 2 cut(s) | 898, 1002 |
| EcoT38I | GRGCYC | 2 cut(s) | 424, 1387 |
| ErhI | CCWWGG | 2 cut(s) | 656, 1540 |
| FaeI | CATG | 3 cut(s) | 660, 716, 1856 |
| FaqI | GGGAC | 2 cut(s) | 1190, 1613 |
| FatI | CATG | 3 cut(s) | 656, 712, 1852 |
| FauI | CCCGC | 3 cut(s) | 194, 1254, 1781 |
| FokI | GGATG | 6 cut(s) | 239, 389, 905, 1287, 1340, 1841 |
| FriOI | GRGCYC | 2 cut(s) | 424, 1387 |
| FspBI | CTAG | 7 cut(s) | 531, 783, 1091, 1367, 1512, 1721, 1815 |
| GlaI | GCGC | 7 cut(s) | 91, 480, 508, 629, 1372, 1374, 1506 |
| GsaI | CCCAGC | 3 cut(s) | 394, 720, 1152 |
| GsuI | CTGGAG | 2 cut(s) | 450, 1289 |
| HaeII | RGCGCY | 1 cut(s) | 510 |
| HaeIII | GGCC | 9 cut(s) | 108, 492, 518, 1433, 1539, 1652, 1673, 1694, 1860 |
| HapII | CCGG | 6 cut(s) | 401, 413, 431, 890, 942, 1166 |
| HgaI | GACGC | 2 cut(s) | 227, 1820 |
| HhaI | GCGC | 7 cut(s) | 92, 481, 509, 630, 1373, 1375, 1507 |
| Hin1I | GRCGYC | 1 cut(s) | 219 |
| Hin1II | CATG | 3 cut(s) | 660, 716, 1856 |
| Hin6I | GCGC | 7 cut(s) | 90, 479, 507, 628, 1371, 1373, 1505 |
| HinP1I | GCGC | 7 cut(s) | 90, 479, 507, 628, 1371, 1373, 1505 |
| HincII | GTYRAC | 2 cut(s) | 1225, 1680 |
| HindII | GTYRAC | 2 cut(s) | 1225, 1680 |
| HinfI | GANTC | 5 cut(s) | 33, 283, 572, 1765, 1849 |
| HpaII | CCGG | 6 cut(s) | 401, 413, 431, 890, 942, 1166 |
| HphI | GGTGA | 4 cut(s) | 680, 1417, 1432, 1699 |
| Hpy166II | GTNNAC | 5 cut(s) | 671, 956, 1225, 1440, 1680 |
| Hpy8I | GTNNAC | 5 cut(s) | 671, 956, 1225, 1440, 1680 |
| Hpy99I | CGWCG | 2 cut(s) | 221, 299 |
| HpyAV | CCTTC | 6 cut(s) | 233, 716, 896, 1022, 1634, 1750 |
| HpyCH4III | ACNGT | 1 cut(s) | 1060 |
| Hsp92I | GRCGYC | 1 cut(s) | 219 |
| Hsp92II | CATG | 3 cut(s) | 660, 716, 1856 |
| HspAI | GCGC | 7 cut(s) | 90, 479, 507, 628, 1371, 1373, 1505 |
| Kpn2I | TCCGGA | 1 cut(s) | 889 |
| Kzo9I | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| LguI | GCTCTTC | 1 cut(s) | 733 |
| LmnI | GCTCC | 9 cut(s) | 175, 835, 907, 1039, 1072, 1145, 1168, 1246, 1795 |
| LweI | GCATC | 7 cut(s) | 138, 345, 367, 883, 905, 1009, 1222 |
| MaeI | CTAG | 7 cut(s) | 531, 783, 1091, 1367, 1512, 1721, 1815 |
| MaeIII | GTNAC | 2 cut(s) | 1054, 1687 |
| MalI | GATC | 6 cut(s) | 72, 87, 684, 1080, 1089, 1476 |
| MbiI | CCGCTC | 1 cut(s) | 1249 |
| MboI | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| MfeI | CAATTG | 3 cut(s) | 206, 274, 1655 |
| MhlI | GDGCHC | 3 cut(s) | 424, 552, 1387 |
| MlsI | TGGCCA | 1 cut(s) | 492 |
| MluCI | AATT | 7 cut(s) | 18, 114, 206, 274, 450, 1608, 1655 |
| MluNI | TGGCCA | 1 cut(s) | 492 |
| MlyI | GAGTC | 3 cut(s) | 277, 1759, 1843 |
| Mox20I | TGGCCA | 1 cut(s) | 492 |
| Mph1103I | ATGCAT | 2 cut(s) | 898, 1002 |
| MroI | TCCGGA | 1 cut(s) | 889 |
| MscI | TGGCCA | 1 cut(s) | 492 |
| MseI | TTAA | 1 cut(s) | 1482 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| Msp20I | TGGCCA | 1 cut(s) | 492 |
| MspA1I | CMGCKG | 1 cut(s) | 611 |
| MspI | CCGG | 6 cut(s) | 401, 413, 431, 890, 942, 1166 |
| MspR9I | CCNGG | 6 cut(s) | 66, 98, 431, 515, 1264, 1305 |
| MunI | CAATTG | 3 cut(s) | 206, 274, 1655 |
| MvaI | CCWGG | 5 cut(s) | 66, 98, 515, 1264, 1305 |
| NciI | CCSGG | 1 cut(s) | 431 |
| NcoI | CCATGG | 1 cut(s) | 656 |
| NdeII | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| NlaIII | CATG | 3 cut(s) | 660, 716, 1856 |
| NlaIV | GGNNCC | 6 cut(s) | 332, 831, 909, 1170, 1350, 1713 |
| NmeAIII | GCCGAG | 1 cut(s) | 1459 |
| NmuCI | GTSAC | 1 cut(s) | 1687 |
| NruI | TCGCGA | 2 cut(s) | 456, 1566 |
| NsiI | ATGCAT | 2 cut(s) | 898, 1002 |
| NspI | RCATGY | 1 cut(s) | 716 |
| NspV | TTCGAA | 1 cut(s) | 1743 |
| PaeI | GCATGC | 1 cut(s) | 716 |
| PaeR7I | CTCGAG | 1 cut(s) | 1250 |
| PauI | GCGCGC | 1 cut(s) | 1371 |
| PceI | AGGCCT | 1 cut(s) | 1539 |
| PciSI | GCTCTTC | 1 cut(s) | 733 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 691 |
| PfeI | GAWTC | 2 cut(s) | 33, 572 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 488 |
| PfoI | TCCNGGA | 1 cut(s) | 1303 |
| PinAI | ACCGGT | 1 cut(s) | 412 |
| Ple19I | CGATCG | 2 cut(s) | 88, 1477 |
| PleI | GAGTC | 3 cut(s) | 277, 1759, 1843 |
| PpsI | GAGTC | 3 cut(s) | 277, 1759, 1843 |
| PpuMI | RGGWCCY | 1 cut(s) | 1349 |
| PshBI | ATTAAT | 1 cut(s) | 1482 |
| Psp124BI | GAGCTC | 1 cut(s) | 1387 |
| Psp5II | RGGWCCY | 1 cut(s) | 1349 |
| Psp6I | CCWGG | 5 cut(s) | 64, 96, 513, 1262, 1303 |
| PspFI | CCCAGC | 3 cut(s) | 390, 716, 1148 |
| PspGI | CCWGG | 5 cut(s) | 64, 96, 513, 1262, 1303 |
| PspN4I | GGNNCC | 6 cut(s) | 332, 831, 909, 1170, 1350, 1713 |
| PspPI | GGNCC | 7 cut(s) | 433, 691, 1349, 1629, 1651, 1672, 1693 |
| PspPPI | RGGWCCY | 1 cut(s) | 1349 |
| PspXI | VCTCGAGB | 1 cut(s) | 1250 |
| PstNI | CAGNNNCTG | 1 cut(s) | 560 |
| PteI | GCGCGC | 1 cut(s) | 1371 |
| PvuI | CGATCG | 2 cut(s) | 88, 1477 |
| PvuII | CAGCTG | 1 cut(s) | 611 |
| RruI | TCGCGA | 2 cut(s) | 456, 1566 |
| RsaI | GTAC | 2 cut(s) | 955, 1287 |
| RsaNI | GTAC | 2 cut(s) | 954, 1286 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1629 |
| RsrII | CGGWCCG | 1 cut(s) | 1629 |
| SacI | GAGCTC | 1 cut(s) | 1387 |
| SapI | GCTCTTC | 1 cut(s) | 733 |
| SaqAI | TTAA | 1 cut(s) | 1482 |
| Sau3AI | GATC | 6 cut(s) | 70, 85, 682, 1078, 1087, 1474 |
| Sau96I | GGNCC | 7 cut(s) | 433, 691, 1349, 1629, 1651, 1672, 1693 |
| SchI | GAGTC | 3 cut(s) | 277, 1759, 1843 |
| ScrFI | CCNGG | 6 cut(s) | 66, 98, 431, 515, 1264, 1305 |
| SduI | GDGCHC | 3 cut(s) | 424, 552, 1387 |
| SfaNI | GCATC | 7 cut(s) | 138, 345, 367, 883, 905, 1009, 1222 |
| SfcI | CTRYAG | 1 cut(s) | 1334 |
| Sfr274I | CTCGAG | 1 cut(s) | 1250 |
| SfuI | TTCGAA | 1 cut(s) | 1743 |
| SinI | GGWCC | 4 cut(s) | 433, 691, 1349, 1629 |
| SlaI | CTCGAG | 1 cut(s) | 1250 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| SmlI | CTYRAG | 5 cut(s) | 1113, 1197, 1250, 1700, 1767 |
| SmoI | CTYRAG | 5 cut(s) | 1113, 1197, 1250, 1700, 1767 |
| SphI | GCATGC | 1 cut(s) | 716 |
| Sse9I | AATT | 7 cut(s) | 18, 114, 206, 274, 450, 1608, 1655 |
| SseBI | AGGCCT | 1 cut(s) | 1539 |
| SspI | AATATT | 1 cut(s) | 1394 |
| SspMI | CTAG | 7 cut(s) | 531, 783, 1091, 1367, 1512, 1721, 1815 |
| SstI | GAGCTC | 1 cut(s) | 1387 |
| StuI | AGGCCT | 1 cut(s) | 1539 |
| StyD4I | CCNGG | 6 cut(s) | 64, 96, 429, 513, 1262, 1303 |
| StyI | CCWWGG | 2 cut(s) | 656, 1540 |
| TaaI | ACNGT | 1 cut(s) | 1060 |
| TaqI | TCGA | 8 cut(s) | 216, 685, 1191, 1251, 1290, 1534, 1662, 1743 |
| TaqII | GACCGA | 3 cut(s) | 185, 690, 1646 |
| TasI | AATT | 7 cut(s) | 18, 114, 206, 274, 450, 1608, 1655 |
| TauI | GCSGC | 5 cut(s) | 111, 521, 1178, 1217, 1413 |
| TfiI | GAWTC | 2 cut(s) | 33, 572 |
| Tru1I | TTAA | 1 cut(s) | 1482 |
| Tru9I | TTAA | 1 cut(s) | 1482 |
| TscAI | CASTG | 2 cut(s) | 655, 1234 |
| TseFI | GTSAC | 1 cut(s) | 1687 |
| Tsp45I | GTSAC | 1 cut(s) | 1687 |
| TspDTI | ATGAA | 4 cut(s) | 1022, 1332, 1500, 1845 |
| TspGWI | ACGGA | 1 cut(s) | 683 |
| TspRI | CASTG | 2 cut(s) | 655, 1234 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 488 |
| VpaK11BI | GGWCC | 4 cut(s) | 433, 691, 1349, 1629 |
| VspI | ATTAAT | 1 cut(s) | 1482 |
| XceI | RCATGY | 1 cut(s) | 716 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 220 |
| XhoI | CTCGAG | 1 cut(s) | 1250 |
| XspI | CTAG | 7 cut(s) | 531, 783, 1091, 1367, 1512, 1721, 1815 |
| Zsp2I | ATGCAT | 2 cut(s) | 898, 1002 |