Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1062 |
| AarI | CACCTGC | 1 cut(s) | 1114 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1575, 2229 |
| Acc36I | ACCTGC | 6 cut(s) | 263, 1114, 1572, 2008, 2389, 2729 |
| Acc65I | GGTACC | 1 cut(s) | 1030 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 1030 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 317 |
| AccBSI | CCGCTC | 1 cut(s) | 334 |
| AccI | GTMKAC | 4 cut(s) | 1131, 1167, 1589, 1649 |
| AccIII | TCCGGA | 1 cut(s) | 951 |
| AclWI | GGATC | 9 cut(s) | 593, 664, 677, 884, 1529, 1799, 1998, 2490, 2498 |
| AcoI | YGGCCR | 3 cut(s) | 194, 723, 1366 |
| AcsI | RAATTY | 1 cut(s) | 2318 |
| AcuI | CTGAAG | 5 cut(s) | 367, 1335, 1452, 1596, 2139 |
| AcyI | GRCGYC | 3 cut(s) | 1161, 1320, 1773 |
| AdeI | CACNNNGTG | 1 cut(s) | 317 |
| AfaI | GTAC | 8 cut(s) | 864, 1032, 1425, 1719, 2043, 2169, 2286, 2302 |
| AfeI | AGCGCT | 2 cut(s) | 520, 2469 |
| AgsI | TTSAA | 6 cut(s) | 46, 599, 1850, 2108, 2327, 2522 |
| AhlI | ACTAGT | 1 cut(s) | 2539 |
| AjnI | CCWGG | 8 cut(s) | 65, 915, 1052, 1070, 1363, 1624, 2007, 2185 |
| Alw21I | GWGCWC | 7 cut(s) | 214, 984, 1269, 1302, 1815, 2269, 2340 |
| Alw26I | GTCTC | 4 cut(s) | 1213, 1394, 1542, 2640 |
| Alw44I | GTGCAC | 1 cut(s) | 210 |
| AlwI | GGATC | 9 cut(s) | 593, 664, 677, 884, 1529, 1799, 1998, 2490, 2498 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 156 |
| Ama87I | CYCGRG | 1 cut(s) | 240 |
| Aor13HI | TCCGGA | 1 cut(s) | 951 |
| Aor51HI | AGCGCT | 2 cut(s) | 520, 2469 |
| ApaI | GGGCCC | 1 cut(s) | 1101 |
| ApaLI | GTGCAC | 1 cut(s) | 210 |
| ApoI | RAATTY | 1 cut(s) | 2318 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 371, 403, 1229, 1261, 2303, 2335 |
| Asp718I | GGTACC | 1 cut(s) | 1030 |
| AspA2I | CCTAGG | 1 cut(s) | 2455 |
| AsuC2I | CCSGG | 3 cut(s) | 61, 141, 563 |
| AsuHPI | GGTGA | 4 cut(s) | 271, 905, 1812, 2471 |
| AsuNHI | GCTAGC | 1 cut(s) | 2696 |
| AvaI | CYCGRG | 1 cut(s) | 240 |
| AvaII | GGWCC | 8 cut(s) | 63, 644, 1085, 1173, 1447, 1661, 2231, 2511 |
| AvrII | CCTAGG | 1 cut(s) | 2455 |
| AxyI | CCTNAGG | 1 cut(s) | 1782 |
| BaeGI | GKGCMC | 3 cut(s) | 74, 214, 1101 |
| BalI | TGGCCA | 1 cut(s) | 196 |
| BamHI | GGATCC | 1 cut(s) | 669 |
| BanI | GGYRCC | 2 cut(s) | 71, 1030 |
| BbsI | GAAGAC | 2 cut(s) | 92, 1323 |
| Bbv12I | GWGCWC | 7 cut(s) | 214, 984, 1269, 1302, 1815, 2269, 2340 |
| BbvCI | CCTCAGC | 3 cut(s) | 1443, 1911, 1938 |
| BceAI | ACGGC | 5 cut(s) | 128, 681, 1148, 2589, 2634 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 72, 732, 766, 2705, 2739 |
| BciT130I | CCWGG | 8 cut(s) | 67, 917, 1054, 1072, 1365, 1626, 2009, 2187 |
| BciVI | GTATCC | 1 cut(s) | 1516 |
| BclI | TGATCA | 1 cut(s) | 2461 |
| BcnI | CCSGG | 3 cut(s) | 61, 141, 563 |
| BcoDI | GTCTC | 4 cut(s) | 1213, 1394, 1542, 2640 |
| BcuI | ACTAGT | 1 cut(s) | 2539 |
| BfaI | CTAG | 9 cut(s) | 254, 737, 812, 2015, 2171, 2456, 2540, 2697, 2708 |
| BfmI | CTRYAG | 3 cut(s) | 270, 1497, 2216 |
| BfoI | RGCGCY | 3 cut(s) | 522, 2471, 2624 |
| BfuAI | ACCTGC | 6 cut(s) | 263, 1114, 1572, 2008, 2389, 2729 |
| BfuI | GTATCC | 1 cut(s) | 1516 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1014, 2582 |
| BglII | AGATCT | 1 cut(s) | 250 |
| BlnI | CCTAGG | 1 cut(s) | 2455 |
| BlpI | GCTNAGC | 2 cut(s) | 1702, 1965 |
| BmcAI | AGTACT | 1 cut(s) | 1425 |
| Bme18I | GGWCC | 8 cut(s) | 63, 644, 1085, 1173, 1447, 1661, 2231, 2511 |
| BmeT110I | CYCGRG | 1 cut(s) | 240 |
| BmrI | ACTGGG | 1 cut(s) | 1416 |
| BmsI | GCATC | 7 cut(s) | 70, 606, 628, 1039, 2014, 2450, 2683 |
| BmtI | GCTAGC | 1 cut(s) | 2700 |
| BmuI | ACTGGG | 1 cut(s) | 1416 |
| BpiI | GAAGAC | 2 cut(s) | 92, 1323 |
| BpmI | CTGGAG | 4 cut(s) | 600, 1608, 2061, 2169 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1268, 1443, 1911, 1938 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1702, 1965 |
| BpuEI | CTTGAG | 2 cut(s) | 2253, 2634 |
| BpuMI | CCSGG | 3 cut(s) | 61, 141, 563 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 3 cut(s) | 1161, 1320, 1773 |
| BsaJI | CCNNGG | 9 cut(s) | 66, 498, 1363, 1538, 2007, 2186, 2379, 2455, 2550 |
| BsaWI | WCCGGW | 1 cut(s) | 951 |
| Bse118I | RCCGGY | 1 cut(s) | 721 |
| Bse1I | ACTGG | 8 cut(s) | 436, 583, 608, 1411, 1575, 1808, 2078, 2586 |
| Bse21I | CCTNAGG | 1 cut(s) | 1782 |
| BseAI | TCCGGA | 1 cut(s) | 951 |
| BseBI | CCWGG | 8 cut(s) | 67, 917, 1054, 1072, 1365, 1626, 2009, 2187 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 9 cut(s) | 66, 498, 1363, 1538, 2007, 2186, 2379, 2455, 2550 |
| BseGI | GGATG | 6 cut(s) | 197, 417, 619, 770, 2203, 2441 |
| BseNI | ACTGG | 8 cut(s) | 436, 583, 608, 1411, 1575, 1808, 2078, 2586 |
| BsePI | GCGCGC | 2 cut(s) | 2654, 2680 |
| BseRI | GAGGAG | 5 cut(s) | 1928, 1955, 2118, 2172, 2606 |
| BseSI | GKGCMC | 3 cut(s) | 74, 214, 1101 |
| BseX3I | CGGCCG | 1 cut(s) | 723 |
| BseYI | CCCAGC | 3 cut(s) | 156, 504, 1598 |
| BsgI | GTGCAG | 2 cut(s) | 1092, 2370 |
| Bsh1285I | CGRYCG | 4 cut(s) | 726, 907, 2067, 2379 |
| BshNI | GGYRCC | 2 cut(s) | 71, 1030 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 4 cut(s) | 726, 907, 2067, 2379 |
| BsiHKAI | GWGCWC | 7 cut(s) | 214, 984, 1269, 1302, 1815, 2269, 2340 |
| BsiHKCI | CYCGRG | 1 cut(s) | 240 |
| BsiSI | CCGG | 5 cut(s) | 61, 141, 562, 722, 952 |
| BslFI | GGGAC | 5 cut(s) | 657, 1186, 1674, 1889, 2222 |
| BsmAI | GTCTC | 4 cut(s) | 1213, 1394, 1542, 2640 |
| BsmBI | CGTCTC | 1 cut(s) | 1542 |
| BsmFI | GGGAC | 5 cut(s) | 657, 1186, 1674, 1889, 2222 |
| BsmI | GAATGC | 1 cut(s) | 1762 |
| BsoBI | CYCGRG | 1 cut(s) | 240 |
| Bsp120I | GGGCCC | 1 cut(s) | 1097 |
| Bsp13I | TCCGGA | 1 cut(s) | 951 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1702, 1965 |
| Bsp19I | CCATGG | 1 cut(s) | 498 |
| Bsp68I | TCGCGA | 2 cut(s) | 234, 1642 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspEI | TCCGGA | 1 cut(s) | 951 |
| BspMAI | CTGCAG | 2 cut(s) | 274, 2220 |
| BspMI | ACCTGC | 6 cut(s) | 263, 1114, 1572, 2008, 2389, 2729 |
| BspOI | GCTAGC | 1 cut(s) | 2700 |
| BspPI | GGATC | 9 cut(s) | 593, 664, 677, 884, 1529, 1799, 1998, 2490, 2498 |
| BspQI | GCTCTTC | 1 cut(s) | 1615 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 1030 |
| BsrBI | CCGCTC | 1 cut(s) | 334 |
| BsrFI | RCCGGY | 1 cut(s) | 721 |
| BsrI | ACTGG | 8 cut(s) | 436, 583, 608, 1411, 1575, 1808, 2078, 2586 |
| BssAI | RCCGGY | 1 cut(s) | 721 |
| BssECI | CCNNGG | 9 cut(s) | 66, 498, 1363, 1538, 2007, 2186, 2379, 2455, 2550 |
| BssHII | GCGCGC | 2 cut(s) | 2654, 2680 |
| BssNI | GRCGYC | 3 cut(s) | 1161, 1320, 1773 |
| BssT1I | CCWWGG | 4 cut(s) | 498, 1538, 2455, 2550 |
| Bst2UI | CCWGG | 8 cut(s) | 67, 917, 1054, 1072, 1365, 1626, 2009, 2187 |
| Bst4CI | ACNGT | 6 cut(s) | 1044, 1382, 1486, 2391, 2569, 2665 |
| Bst6I | CTCTTC | 4 cut(s) | 1250, 1615, 1746, 1872 |
| BstACI | GRCGYC | 3 cut(s) | 1161, 1320, 1773 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1427 |
| BstDSI | CCRYGG | 2 cut(s) | 498, 2379 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1542, 2079 |
| BstF5I | GGATG | 6 cut(s) | 197, 417, 619, 770, 2203, 2441 |
| BstH2I | RGCGCY | 3 cut(s) | 522, 2471, 2624 |
| BstMAI | GTCTC | 4 cut(s) | 1213, 1394, 1542, 2640 |
| BstMCI | CGRYCG | 4 cut(s) | 726, 907, 2067, 2379 |
| BstNI | CCWGG | 8 cut(s) | 67, 917, 1054, 1072, 1365, 1626, 2009, 2187 |
| BstNSI | RCATGY | 1 cut(s) | 823 |
| BstSFI | CTRYAG | 3 cut(s) | 270, 1497, 2216 |
| BstSLI | GKGCMC | 3 cut(s) | 74, 214, 1101 |
| BstV2I | GAAGAC | 2 cut(s) | 92, 1323 |
| BstX2I | RGATCY | 4 cut(s) | 250, 669, 2482, 2490 |
| BstYI | RGATCY | 4 cut(s) | 250, 669, 2482, 2490 |
| BstZI | CGGCCG | 1 cut(s) | 723 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1782 |
| BsuI | GTATCC | 1 cut(s) | 1516 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 2 cut(s) | 498, 2379 |
| BtgZI | GCGATG | 2 cut(s) | 2098, 2645 |
| BtsCI | GGATG | 6 cut(s) | 197, 417, 619, 770, 2203, 2441 |
| BtsIMutI | CAGTG | 7 cut(s) | 429, 960, 1040, 1387, 1689, 1815, 2307 |
| BtuMI | TCGCGA | 2 cut(s) | 234, 1642 |
| BveI | ACCTGC | 6 cut(s) | 263, 1114, 1572, 2008, 2389, 2729 |
| CaiI | CAGNNNCTG | 1 cut(s) | 156 |
| Cfr10I | RCCGGY | 1 cut(s) | 721 |
| Cfr42I | CCGCGG | 1 cut(s) | 2382 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 6 cut(s) | 1169, 1328, 1635, 1781, 1806, 2261 |
| Csp6I | GTAC | 8 cut(s) | 863, 1031, 1424, 1718, 2042, 2168, 2285, 2301 |
| CviAII | CATG | 7 cut(s) | 91, 464, 499, 820, 1595, 1984, 2735 |
| CviQI | GTAC | 8 cut(s) | 863, 1031, 1424, 1718, 2042, 2168, 2285, 2301 |
| DraIII | CACNNNGTG | 1 cut(s) | 317 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1575, 2229 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1575, 2229 |
| EaeI | YGGCCR | 3 cut(s) | 194, 723, 1366 |
| EagI | CGGCCG | 1 cut(s) | 723 |
| Eam1104I | CTCTTC | 4 cut(s) | 1250, 1615, 1746, 1872 |
| EarI | CTCTTC | 4 cut(s) | 1250, 1615, 1746, 1872 |
| EciI | GGCGGA | 3 cut(s) | 683, 914, 2003 |
| Ecl136II | GAGCTC | 4 cut(s) | 982, 1267, 2267, 2338 |
| EclXI | CGGCCG | 1 cut(s) | 723 |
| Eco130I | CCWWGG | 4 cut(s) | 498, 1538, 2455, 2550 |
| Eco147I | AGGCCT | 1 cut(s) | 1330 |
| Eco32I | GATATC | 2 cut(s) | 706, 949 |
| Eco47I | GGWCC | 8 cut(s) | 63, 644, 1085, 1173, 1447, 1661, 2231, 2511 |
| Eco47III | AGCGCT | 2 cut(s) | 520, 2469 |
| Eco52I | CGGCCG | 1 cut(s) | 723 |
| Eco53kI | GAGCTC | 4 cut(s) | 982, 1267, 2267, 2338 |
| Eco57I | CTGAAG | 5 cut(s) | 367, 1335, 1452, 1596, 2139 |
| Eco81I | CCTNAGG | 1 cut(s) | 1782 |
| Eco88I | CYCGRG | 1 cut(s) | 240 |
| EcoICRI | GAGCTC | 4 cut(s) | 982, 1267, 2267, 2338 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1542, 2079 |
| EcoO109I | RGGNCCY | 6 cut(s) | 644, 1098, 1447, 1661, 2084, 2231 |
| EcoRII | CCWGG | 8 cut(s) | 65, 915, 1052, 1070, 1363, 1624, 2007, 2185 |
| EcoRV | GATATC | 2 cut(s) | 706, 949 |
| EcoT14I | CCWWGG | 4 cut(s) | 498, 1538, 2455, 2550 |
| EcoT22I | ATGCAT | 1 cut(s) | 621 |
| ErhI | CCWWGG | 4 cut(s) | 498, 1538, 2455, 2550 |
| Esp3I | CGTCTC | 1 cut(s) | 1542 |
| FaeI | CATG | 7 cut(s) | 94, 467, 502, 823, 1598, 1987, 2738 |
| FaqI | GGGAC | 5 cut(s) | 657, 1186, 1674, 1889, 2222 |
| FatI | CATG | 7 cut(s) | 90, 463, 498, 819, 1594, 1983, 2734 |
| FauI | CCCGC | 8 cut(s) | 717, 726, 1013, 1383, 1870, 1942, 1978, 2453 |
| FauNDI | CATATG | 2 cut(s) | 457, 2332 |
| FbaI | TGATCA | 1 cut(s) | 2461 |
| FblI | GTMKAC | 4 cut(s) | 1131, 1167, 1589, 1649 |
| FokI | GGATG | 6 cut(s) | 184, 404, 606, 757, 2210, 2428 |
| FspBI | CTAG | 9 cut(s) | 254, 737, 812, 2015, 2171, 2456, 2540, 2697, 2708 |
| GsaI | CCCAGC | 3 cut(s) | 160, 508, 1602 |
| GsuI | CTGGAG | 4 cut(s) | 600, 1608, 2061, 2169 |
| HaeII | RGCGCY | 3 cut(s) | 522, 2471, 2624 |
| HapII | CCGG | 5 cut(s) | 61, 141, 562, 722, 952 |
| HgaI | GACGC | 6 cut(s) | 1169, 1328, 1635, 1781, 1806, 2261 |
| Hin1I | GRCGYC | 3 cut(s) | 1161, 1320, 1773 |
| Hin1II | CATG | 7 cut(s) | 94, 467, 502, 823, 1598, 1987, 2738 |
| HincII | GTYRAC | 2 cut(s) | 1132, 1216 |
| HindII | GTYRAC | 2 cut(s) | 1132, 1216 |
| HindIII | AAGCTT | 1 cut(s) | 2747 |
| HinfI | GANTC | 8 cut(s) | 136, 476, 655, 852, 1080, 1225, 2223, 2450 |
| HpaII | CCGG | 5 cut(s) | 61, 141, 562, 722, 952 |
| HphI | GGTGA | 4 cut(s) | 271, 905, 1812, 2471 |
| Hpy166II | GTNNAC | 6 cut(s) | 212, 1132, 1168, 1216, 1590, 1650 |
| Hpy8I | GTNNAC | 6 cut(s) | 212, 1132, 1168, 1216, 1590, 1650 |
| Hpy99I | CGWCG | 8 cut(s) | 114, 446, 616, 890, 1475, 1581, 1745, 2072 |
| HpyCH4III | ACNGT | 6 cut(s) | 1044, 1382, 1486, 2391, 2569, 2665 |
| HpyCH4IV | ACGT | 3 cut(s) | 374, 1902, 2299 |
| HpySE526I | ACGT | 3 cut(s) | 374, 1902, 2299 |
| Hsp92I | GRCGYC | 3 cut(s) | 1161, 1320, 1773 |
| Hsp92II | CATG | 7 cut(s) | 94, 467, 502, 823, 1598, 1987, 2738 |
| KflI | GGGWCCC | 1 cut(s) | 644 |
| Kpn2I | TCCGGA | 1 cut(s) | 951 |
| KpnI | GGTACC | 1 cut(s) | 1034 |
| KroI | GCCGGC | 1 cut(s) | 721 |
| KroNI | GCCGGC | 1 cut(s) | 723 |
| Ksp22I | TGATCA | 1 cut(s) | 2461 |
| KspI | CCGCGG | 1 cut(s) | 2382 |
| LguI | GCTCTTC | 1 cut(s) | 1615 |
| LmnI | GCTCC | 6 cut(s) | 10, 994, 1765, 2185, 2343, 2593 |
| LweI | GCATC | 7 cut(s) | 70, 606, 628, 1039, 2014, 2450, 2683 |
| MaeI | CTAG | 9 cut(s) | 254, 737, 812, 2015, 2171, 2456, 2540, 2697, 2708 |
| MaeII | ACGT | 3 cut(s) | 374, 1902, 2299 |
| MaeIII | GTNAC | 4 cut(s) | 1818, 1898, 2563, 2569 |
| MbiI | CCGCTC | 1 cut(s) | 334 |
| MfeI | CAATTG | 2 cut(s) | 731, 1025 |
| MflI | RGATCY | 4 cut(s) | 250, 669, 2482, 2490 |
| MlsI | TGGCCA | 1 cut(s) | 196 |
| MluCI | AATT | 9 cut(s) | 190, 470, 731, 837, 1010, 1025, 1057, 2318, 2558 |
| MluNI | TGGCCA | 1 cut(s) | 196 |
| MlyI | GAGTC | 5 cut(s) | 130, 470, 1219, 2217, 2444 |
| MmeI | TCCRAC | 3 cut(s) | 393, 927, 1764 |
| Mox20I | TGGCCA | 1 cut(s) | 196 |
| Mph1103I | ATGCAT | 1 cut(s) | 621 |
| MroI | TCCGGA | 1 cut(s) | 951 |
| MroNI | GCCGGC | 1 cut(s) | 721 |
| MscI | TGGCCA | 1 cut(s) | 196 |
| MseI | TTAA | 2 cut(s) | 2364, 2615 |
| MslI | CAYNNNNRTG | 2 cut(s) | 89, 1295 |
| Msp20I | TGGCCA | 1 cut(s) | 196 |
| MspA1I | CMGCKG | 9 cut(s) | 153, 1397, 1442, 1616, 1928, 1937, 1973, 2258, 2381 |
| MspI | CCGG | 5 cut(s) | 61, 141, 562, 722, 952 |
| MunI | CAATTG | 2 cut(s) | 731, 1025 |
| Mva1269I | GAATGC | 1 cut(s) | 1762 |
| MvaI | CCWGG | 8 cut(s) | 67, 917, 1054, 1072, 1365, 1626, 2009, 2187 |
| NaeI | GCCGGC | 1 cut(s) | 723 |
| NciI | CCSGG | 3 cut(s) | 61, 141, 563 |
| NcoI | CCATGG | 1 cut(s) | 498 |
| NdeI | CATATG | 2 cut(s) | 457, 2332 |
| NgoMIV | GCCGGC | 1 cut(s) | 721 |
| NheI | GCTAGC | 1 cut(s) | 2696 |
| NlaIII | CATG | 7 cut(s) | 94, 467, 502, 823, 1598, 1987, 2738 |
| NmuCI | GTSAC | 3 cut(s) | 1818, 2563, 2569 |
| NruI | TCGCGA | 2 cut(s) | 234, 1642 |
| NsiI | ATGCAT | 1 cut(s) | 621 |
| NspI | RCATGY | 1 cut(s) | 823 |
| PaqCI | CACCTGC | 1 cut(s) | 1114 |
| PauI | GCGCGC | 2 cut(s) | 2654, 2680 |
| PceI | AGGCCT | 1 cut(s) | 1330 |
| PciSI | GCTCTTC | 1 cut(s) | 1615 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1128, 1137, 2296 |
| PctI | GAATGC | 1 cut(s) | 1762 |
| PdiI | GCCGGC | 1 cut(s) | 723 |
| PfeI | GAWTC | 3 cut(s) | 655, 852, 1080 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 317 |
| PfoI | TCCNGGA | 2 cut(s) | 139, 1624 |
| Ple19I | CGATCG | 1 cut(s) | 2067 |
| PleI | GAGTC | 5 cut(s) | 130, 470, 1219, 2217, 2444 |
| PpsI | GAGTC | 5 cut(s) | 130, 470, 1219, 2217, 2444 |
| PpuMI | RGGWCCY | 4 cut(s) | 644, 1447, 1661, 2231 |
| PsiI | TTATAA | 1 cut(s) | 1062 |
| Psp124BI | GAGCTC | 4 cut(s) | 984, 1269, 2269, 2340 |
| Psp5II | RGGWCCY | 4 cut(s) | 644, 1447, 1661, 2231 |
| Psp6I | CCWGG | 8 cut(s) | 65, 915, 1052, 1070, 1363, 1624, 2007, 2185 |
| PspFI | CCCAGC | 3 cut(s) | 156, 504, 1598 |
| PspGI | CCWGG | 8 cut(s) | 65, 915, 1052, 1070, 1363, 1624, 2007, 2185 |
| PspOMI | GGGCCC | 1 cut(s) | 1097 |
| PspPPI | RGGWCCY | 4 cut(s) | 644, 1447, 1661, 2231 |
| PstI | CTGCAG | 2 cut(s) | 274, 2220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 156 |
| PsuI | RGATCY | 4 cut(s) | 250, 669, 2482, 2490 |
| PteI | GCGCGC | 2 cut(s) | 2654, 2680 |
| PvuI | CGATCG | 1 cut(s) | 2067 |
| PvuII | CAGCTG | 3 cut(s) | 1442, 1616, 2258 |
| RruI | TCGCGA | 2 cut(s) | 234, 1642 |
| RsaI | GTAC | 8 cut(s) | 864, 1032, 1425, 1719, 2043, 2169, 2286, 2302 |
| RsaNI | GTAC | 8 cut(s) | 863, 1031, 1424, 1718, 2042, 2168, 2285, 2301 |
| RseI | CAYNNNNRTG | 2 cut(s) | 89, 1295 |
| SacI | GAGCTC | 4 cut(s) | 984, 1269, 2269, 2340 |
| SacII | CCGCGG | 1 cut(s) | 2382 |
| SalI | GTCGAC | 1 cut(s) | 1130 |
| SapI | GCTCTTC | 1 cut(s) | 1615 |
| SaqAI | TTAA | 2 cut(s) | 2364, 2615 |
| ScaI | AGTACT | 1 cut(s) | 1425 |
| SchI | GAGTC | 5 cut(s) | 130, 470, 1219, 2217, 2444 |
| SfaNI | GCATC | 7 cut(s) | 70, 606, 628, 1039, 2014, 2450, 2683 |
| SfcI | CTRYAG | 3 cut(s) | 270, 1497, 2216 |
| Sfr303I | CCGCGG | 1 cut(s) | 2382 |
| SgrBI | CCGCGG | 1 cut(s) | 2382 |
| SinI | GGWCC | 8 cut(s) | 63, 644, 1085, 1173, 1447, 1661, 2231, 2511 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 89, 1295 |
| SmlI | CTYRAG | 2 cut(s) | 2268, 2649 |
| SmoI | CTYRAG | 2 cut(s) | 2268, 2649 |
| SpeI | ACTAGT | 1 cut(s) | 2539 |
| Sse9I | AATT | 9 cut(s) | 190, 470, 731, 837, 1010, 1025, 1057, 2318, 2558 |
| SseBI | AGGCCT | 1 cut(s) | 1330 |
| SspMI | CTAG | 9 cut(s) | 254, 737, 812, 2015, 2171, 2456, 2540, 2697, 2708 |
| SstI | GAGCTC | 4 cut(s) | 984, 1269, 2269, 2340 |
| StuI | AGGCCT | 1 cut(s) | 1330 |
| StyI | CCWWGG | 4 cut(s) | 498, 1538, 2455, 2550 |
| TaaI | ACNGT | 6 cut(s) | 1044, 1382, 1486, 2391, 2569, 2665 |
| TaiI | ACGT | 3 cut(s) | 377, 1905, 2302 |
| TaqII | GACCGA | 3 cut(s) | 1073, 1190, 1581 |
| TasI | AATT | 9 cut(s) | 190, 470, 731, 837, 1010, 1025, 1057, 2318, 2558 |
| TatI | WGTACW | 2 cut(s) | 862, 1423 |
| TfiI | GAWTC | 3 cut(s) | 655, 852, 1080 |
| Tru1I | TTAA | 2 cut(s) | 2364, 2615 |
| Tru9I | TTAA | 2 cut(s) | 2364, 2615 |
| TscAI | CASTG | 7 cut(s) | 436, 967, 1047, 1387, 1696, 1815, 2314 |
| TseFI | GTSAC | 3 cut(s) | 1818, 2563, 2569 |
| Tsp45I | GTSAC | 3 cut(s) | 1818, 2563, 2569 |
| TspDTI | ATGAA | 4 cut(s) | 759, 1992, 2214, 2331 |
| TspGWI | ACGGA | 1 cut(s) | 1763 |
| TspRI | CASTG | 7 cut(s) | 436, 967, 1047, 1387, 1696, 1815, 2314 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 317 |
| VneI | GTGCAC | 1 cut(s) | 210 |
| VpaK11BI | GGWCC | 8 cut(s) | 63, 644, 1085, 1173, 1447, 1661, 2231, 2511 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1542, 2079 |
| XapI | RAATTY | 1 cut(s) | 2318 |
| XbaI | TCTAGA | 1 cut(s) | 2014 |
| XceI | RCATGY | 1 cut(s) | 823 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1785 |
| XmaJI | CCTAGG | 1 cut(s) | 2455 |
| XmiI | GTMKAC | 4 cut(s) | 1131, 1167, 1589, 1649 |
| XspI | CTAG | 9 cut(s) | 254, 737, 812, 2015, 2171, 2456, 2540, 2697, 2708 |
| ZrmI | AGTACT | 1 cut(s) | 1425 |
| Zsp2I | ATGCAT | 1 cut(s) | 621 |