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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 553 |
| Acc16I | TGCGCA | 1 cut(s) | 712 |
| Acc36I | ACCTGC | 3 cut(s) | 152, 713, 817 |
| AccII | CGCG | 5 cut(s) | 579, 619, 683, 705, 772 |
| AccIII | TCCGGA | 1 cut(s) | 116 |
| AciI | CCGC | 9 cut(s) | 414, 418, 453, 617, 683, 703, 770, 772, 812 |
| AclWI | GGATC | 3 cut(s) | 168, 273, 822 |
| AcoI | YGGCCR | 1 cut(s) | 415 |
| AcuI | CTGAAG | 1 cut(s) | 280 |
| AfaI | GTAC | 4 cut(s) | 67, 107, 148, 428 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 183, 413 |
| AgsI | TTSAA | 5 cut(s) | 198, 339, 729, 846, 855 |
| AleI | CACNNNNGTG | 1 cut(s) | 739 |
| AluBI | AGCT | 9 cut(s) | 95, 230, 348, 591, 662, 717, 732, 792, 851 |
| AluI | AGCT | 9 cut(s) | 95, 230, 348, 591, 662, 717, 732, 792, 851 |
| Alw21I | GWGCWC | 1 cut(s) | 593 |
| AlwI | GGATC | 3 cut(s) | 168, 273, 822 |
| Ama87I | CYCGRG | 1 cut(s) | 456 |
| Aor13HI | TCCGGA | 1 cut(s) | 116 |
| AoxI | GGCC | 7 cut(s) | 52, 109, 310, 379, 415, 743, 877 |
| ApeKI | GCWGC | 3 cut(s) | 411, 539, 542 |
| AscI | GGCGCGCC | 1 cut(s) | 577 |
| AseI | ATTAAT | 1 cut(s) | 688 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 193 |
| AspLEI | GCGC | 5 cut(s) | 161, 579, 581, 683, 713 |
| AspS9I | GGNCC | 8 cut(s) | 2, 110, 311, 380, 555, 806, 835, 878 |
| AsuC2I | CCSGG | 1 cut(s) | 184 |
| AsuHPI | GGTGA | 1 cut(s) | 309 |
| AvaI | CYCGRG | 1 cut(s) | 456 |
| AvaII | GGWCC | 4 cut(s) | 2, 555, 806, 835 |
| AxyI | CCTNAGG | 1 cut(s) | 130 |
| BanII | GRGCYC | 1 cut(s) | 593 |
| Bbv12I | GWGCWC | 1 cut(s) | 593 |
| BbvI | GCAGC | 3 cut(s) | 398, 526, 554 |
| BccI | CCATC | 4 cut(s) | 393, 528, 599, 835 |
| BceAI | ACGGC | 1 cut(s) | 124 |
| BcnI | CCSGG | 1 cut(s) | 184 |
| BfaI | CTAG | 3 cut(s) | 28, 474, 510 |
| BfmI | CTRYAG | 1 cut(s) | 540 |
| BfuAI | ACCTGC | 3 cut(s) | 152, 713, 817 |
| BisI | GCNGC | 6 cut(s) | 412, 415, 418, 540, 543, 773 |
| BlsI | GCNGC | 6 cut(s) | 413, 416, 419, 541, 544, 774 |
| Bme1390I | CCNGG | 1 cut(s) | 184 |
| Bme18I | GGWCC | 4 cut(s) | 2, 555, 806, 835 |
| BmeT110I | CYCGRG | 1 cut(s) | 456 |
| BmgT120I | GGNCC | 8 cut(s) | 2, 110, 311, 380, 555, 806, 835, 878 |
| BmiI | GGNNCC | 9 cut(s) | 4, 136, 364, 370, 382, 505, 556, 807, 837 |
| BmrFI | CCNGG | 1 cut(s) | 184 |
| BmrI | ACTGGG | 1 cut(s) | 875 |
| BmsI | GCATC | 2 cut(s) | 110, 774 |
| BmuI | ACTGGG | 1 cut(s) | 875 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 781, 813 |
| BpmI | CTGGAG | 1 cut(s) | 117 |
| Bpu10I | CCTNAGC | 1 cut(s) | 91 |
| BpuEI | CTTGAG | 2 cut(s) | 382, 577 |
| BpuMI | CCSGG | 1 cut(s) | 184 |
| BsaBI | GATNNNNATC | 1 cut(s) | 178 |
| BsaJI | CCNNGG | 1 cut(s) | 770 |
| BsaWI | WCCGGW | 3 cut(s) | 116, 233, 365 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 658, 688 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 183, 413 |
| Bse1I | ACTGG | 1 cut(s) | 881 |
| Bse21I | CCTNAGG | 1 cut(s) | 130 |
| Bse8I | GATNNNNATC | 1 cut(s) | 178 |
| BseAI | TCCGGA | 1 cut(s) | 116 |
| BseDI | CCNNGG | 1 cut(s) | 770 |
| BseGI | GGATG | 3 cut(s) | 125, 539, 765 |
| BseJI | GATNNNNATC | 1 cut(s) | 178 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 183, 413 |
| BseMII | CTCAG | 4 cut(s) | 82, 121, 625, 631 |
| BseNI | ACTGG | 1 cut(s) | 881 |
| BsePI | GCGCGC | 1 cut(s) | 577 |
| BseRI | GAGGAG | 2 cut(s) | 147, 496 |
| BseX3I | CGGCCG | 1 cut(s) | 415 |
| BseXI | GCAGC | 3 cut(s) | 398, 526, 554 |
| BseYI | CCCAGC | 1 cut(s) | 348 |
| BsgI | GTGCAG | 1 cut(s) | 190 |
| Bsh1236I | CGCG | 5 cut(s) | 579, 619, 683, 705, 772 |
| Bsh1285I | CGRYCG | 3 cut(s) | 238, 418, 703 |
| BshFI | GGCC | 7 cut(s) | 54, 111, 312, 381, 417, 745, 879 |
| BsiEI | CGRYCG | 3 cut(s) | 238, 418, 703 |
| BsiHKAI | GWGCWC | 1 cut(s) | 593 |
| BsiHKCI | CYCGRG | 1 cut(s) | 456 |
| BsiSI | CCGG | 5 cut(s) | 37, 117, 184, 234, 366 |
| BslFI | GGGAC | 2 cut(s) | 365, 819 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 183, 413 |
| BsmFI | GGGAC | 2 cut(s) | 365, 819 |
| BsmI | GAATGC | 1 cut(s) | 47 |
| BsnI | GGCC | 7 cut(s) | 54, 111, 312, 381, 417, 745, 879 |
| BsoBI | CYCGRG | 1 cut(s) | 456 |
| Bsp1286I | GDGCHC | 1 cut(s) | 593 |
| Bsp13I | TCCGGA | 1 cut(s) | 116 |
| Bsp1407I | TGTACA | 2 cut(s) | 65, 146 |
| Bsp143I | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| BspACI | CCGC | 9 cut(s) | 414, 418, 453, 617, 683, 703, 770, 772, 812 |
| BspANI | GGCC | 7 cut(s) | 54, 111, 312, 381, 417, 745, 879 |
| BspCNI | CTCAG | 4 cut(s) | 83, 122, 626, 632 |
| BspEI | TCCGGA | 1 cut(s) | 116 |
| BspFNI | CGCG | 5 cut(s) | 579, 619, 683, 705, 772 |
| BspLI | GGNNCC | 9 cut(s) | 4, 136, 364, 370, 382, 505, 556, 807, 837 |
| BspMAI | CTGCAG | 1 cut(s) | 544 |
| BspMI | ACCTGC | 3 cut(s) | 152, 713, 817 |
| BspPI | GGATC | 3 cut(s) | 168, 273, 822 |
| BsrGI | TGTACA | 2 cut(s) | 65, 146 |
| BsrI | ACTGG | 1 cut(s) | 881 |
| BssECI | CCNNGG | 1 cut(s) | 770 |
| BssHII | GCGCGC | 1 cut(s) | 577 |
| BssMI | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| BstAUI | TGTACA | 2 cut(s) | 65, 146 |
| BstC8I | GCNNGC | 5 cut(s) | 205, 322, 579, 583, 715 |
| BstDEI | CTNAG | 5 cut(s) | 91, 130, 286, 634, 640 |
| BstDSI | CCRYGG | 1 cut(s) | 770 |
| BstF5I | GGATG | 3 cut(s) | 125, 539, 765 |
| BstFNI | CGCG | 5 cut(s) | 579, 619, 683, 705, 772 |
| BstHHI | GCGC | 5 cut(s) | 161, 579, 581, 683, 713 |
| BstKTI | GATC | 5 cut(s) | 73, 176, 281, 817, 868 |
| BstMBI | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| BstMCI | CGRYCG | 3 cut(s) | 238, 418, 703 |
| BstSCI | CCNGG | 1 cut(s) | 182 |
| BstSFI | CTRYAG | 1 cut(s) | 540 |
| BstUI | CGCG | 5 cut(s) | 579, 619, 683, 705, 772 |
| BstV1I | GCAGC | 3 cut(s) | 398, 526, 554 |
| BstX2I | RGATCY | 1 cut(s) | 814 |
| BstYI | RGATCY | 1 cut(s) | 814 |
| BstZI | CGGCCG | 1 cut(s) | 415 |
| Bsu36I | CCTNAGG | 1 cut(s) | 130 |
| BsuRI | GGCC | 7 cut(s) | 54, 111, 312, 381, 417, 745, 879 |
| BtgI | CCRYGG | 1 cut(s) | 770 |
| BtgZI | GCGATG | 1 cut(s) | 55 |
| BtsCI | GGATG | 3 cut(s) | 125, 539, 765 |
| BtsIMutI | CAGTG | 1 cut(s) | 631 |
| BveI | ACCTGC | 3 cut(s) | 152, 713, 817 |
| Cac8I | GCNNGC | 5 cut(s) | 205, 322, 579, 583, 715 |
| CciNI | GCGGCCGC | 1 cut(s) | 415 |
| CfoI | GCGC | 5 cut(s) | 161, 579, 581, 683, 713 |
| Cfr13I | GGNCC | 8 cut(s) | 2, 110, 311, 380, 555, 806, 835, 878 |
| Cfr42I | CCGCGG | 1 cut(s) | 773 |
| Csp6I | GTAC | 4 cut(s) | 66, 106, 147, 427 |
| CviQI | GTAC | 4 cut(s) | 66, 106, 147, 427 |
| DdeI | CTNAG | 5 cut(s) | 91, 130, 286, 634, 640 |
| DpnI | GATC | 5 cut(s) | 72, 175, 280, 816, 867 |
| DpnII | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 553 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 553 |
| EaeI | YGGCCR | 1 cut(s) | 415 |
| EagI | CGGCCG | 1 cut(s) | 415 |
| Ecl136II | GAGCTC | 1 cut(s) | 591 |
| EclXI | CGGCCG | 1 cut(s) | 415 |
| Eco24I | GRGCYC | 1 cut(s) | 593 |
| Eco47I | GGWCC | 4 cut(s) | 2, 555, 806, 835 |
| Eco52I | CGGCCG | 1 cut(s) | 415 |
| Eco53kI | GAGCTC | 1 cut(s) | 591 |
| Eco57I | CTGAAG | 1 cut(s) | 280 |
| Eco81I | CCTNAGG | 1 cut(s) | 130 |
| Eco88I | CYCGRG | 1 cut(s) | 456 |
| EcoICRI | GAGCTC | 1 cut(s) | 591 |
| EcoO109I | RGGNCCY | 2 cut(s) | 555, 806 |
| EcoT38I | GRGCYC | 1 cut(s) | 593 |
| FaiI | YATR | 5 cut(s) | 75, 492, 519, 656, 658 |
| FaqI | GGGAC | 2 cut(s) | 365, 819 |
| FauI | CCCGC | 2 cut(s) | 460, 777 |
| Fnu4HI | GCNGC | 6 cut(s) | 412, 415, 418, 540, 543, 773 |
| FokI | GGATG | 3 cut(s) | 132, 546, 752 |
| FriOI | GRGCYC | 1 cut(s) | 593 |
| Fsp4HI | GCNGC | 6 cut(s) | 412, 415, 418, 540, 543, 773 |
| FspBI | CTAG | 3 cut(s) | 28, 474, 510 |
| FspI | TGCGCA | 1 cut(s) | 712 |
| GlaI | GCGC | 5 cut(s) | 160, 578, 580, 682, 712 |
| GluI | GCNGC | 6 cut(s) | 412, 415, 418, 540, 543, 773 |
| GsaI | CCCAGC | 1 cut(s) | 352 |
| GsuI | CTGGAG | 1 cut(s) | 117 |
| HaeIII | GGCC | 7 cut(s) | 54, 111, 312, 381, 417, 745, 879 |
| HapII | CCGG | 5 cut(s) | 37, 117, 184, 234, 366 |
| HhaI | GCGC | 5 cut(s) | 161, 579, 581, 683, 713 |
| Hin6I | GCGC | 5 cut(s) | 159, 577, 579, 681, 711 |
| HinP1I | GCGC | 5 cut(s) | 159, 577, 579, 681, 711 |
| HinfI | GANTC | 1 cut(s) | 59 |
| HpaII | CCGG | 5 cut(s) | 37, 117, 184, 234, 366 |
| HphI | GGTGA | 1 cut(s) | 309 |
| Hpy188I | TCNGA | 1 cut(s) | 835 |
| Hpy188III | TCNNGA | 9 cut(s) | 117, 198, 222, 336, 399, 558, 594, 650, 846 |
| Hpy99I | CGWCG | 1 cut(s) | 393 |
| HpyAV | CCTTC | 2 cut(s) | 34, 123 |
| HpyCH4IV | ACGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 5 cut(s) | 47, 123, 207, 542, 750 |
| HpyF3I | CTNAG | 5 cut(s) | 91, 130, 286, 634, 640 |
| HpySE526I | ACGT | 1 cut(s) | 331 |
| HspAI | GCGC | 5 cut(s) | 159, 577, 579, 681, 711 |
| Kpn2I | TCCGGA | 1 cut(s) | 116 |
| KspI | CCGCGG | 1 cut(s) | 773 |
| Kzo9I | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| LmnI | GCTCC | 2 cut(s) | 134, 509 |
| Lsp1109I | GCAGC | 3 cut(s) | 398, 526, 554 |
| LweI | GCATC | 2 cut(s) | 110, 774 |
| MaeI | CTAG | 3 cut(s) | 28, 474, 510 |
| MaeII | ACGT | 1 cut(s) | 331 |
| MalI | GATC | 5 cut(s) | 72, 175, 280, 816, 867 |
| MboI | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| MboII | GAAGA | 3 cut(s) | 273, 312, 822 |
| MfeI | CAATTG | 1 cut(s) | 861 |
| MflI | RGATCY | 1 cut(s) | 814 |
| MhlI | GDGCHC | 1 cut(s) | 593 |
| MluCI | AATT | 2 cut(s) | 217, 861 |
| MroI | TCCGGA | 1 cut(s) | 116 |
| MroXI | GAANNNNTTC | 1 cut(s) | 193 |
| MseI | TTAA | 1 cut(s) | 688 |
| MslI | CAYNNNNRTG | 1 cut(s) | 739 |
| MspA1I | CMGCKG | 2 cut(s) | 420, 772 |
| MspI | CCGG | 5 cut(s) | 37, 117, 184, 234, 366 |
| MspR9I | CCNGG | 1 cut(s) | 184 |
| MunI | CAATTG | 1 cut(s) | 861 |
| Mva1269I | GAATGC | 1 cut(s) | 47 |
| MvnI | CGCG | 5 cut(s) | 579, 619, 683, 705, 772 |
| NciI | CCSGG | 1 cut(s) | 184 |
| NdeII | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| NlaIV | GGNNCC | 9 cut(s) | 4, 136, 364, 370, 382, 505, 556, 807, 837 |
| NmeAIII | GCCGAG | 1 cut(s) | 698 |
| NotI | GCGGCCGC | 1 cut(s) | 415 |
| NsbI | TGCGCA | 1 cut(s) | 712 |
| OliI | CACNNNNGTG | 1 cut(s) | 739 |
| PalAI | GGCGCGCC | 1 cut(s) | 577 |
| PauI | GCGCGC | 1 cut(s) | 577 |
| PctI | GAATGC | 1 cut(s) | 47 |
| PdmI | GAANNNNTTC | 1 cut(s) | 193 |
| PfeI | GAWTC | 1 cut(s) | 59 |
| PkrI | GCNGC | 6 cut(s) | 413, 416, 419, 541, 544, 774 |
| PpuMI | RGGWCCY | 2 cut(s) | 555, 806 |
| PshBI | ATTAAT | 1 cut(s) | 688 |
| Psp124BI | GAGCTC | 1 cut(s) | 593 |
| Psp5II | RGGWCCY | 2 cut(s) | 555, 806 |
| PspFI | CCCAGC | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 9 cut(s) | 4, 136, 364, 370, 382, 505, 556, 807, 837 |
| PspPI | GGNCC | 8 cut(s) | 2, 110, 311, 380, 555, 806, 835, 878 |
| PspPPI | RGGWCCY | 2 cut(s) | 555, 806 |
| PstI | CTGCAG | 1 cut(s) | 544 |
| PsuI | RGATCY | 1 cut(s) | 814 |
| PteI | GCGCGC | 1 cut(s) | 577 |
| RsaI | GTAC | 4 cut(s) | 67, 107, 148, 428 |
| RsaNI | GTAC | 4 cut(s) | 66, 106, 147, 427 |
| RseI | CAYNNNNRTG | 1 cut(s) | 739 |
| SacI | GAGCTC | 1 cut(s) | 593 |
| SacII | CCGCGG | 1 cut(s) | 773 |
| SaqAI | TTAA | 1 cut(s) | 688 |
| SatI | GCNGC | 6 cut(s) | 412, 415, 418, 540, 543, 773 |
| Sau3AI | GATC | 5 cut(s) | 70, 173, 278, 814, 865 |
| Sau96I | GGNCC | 8 cut(s) | 2, 110, 311, 380, 555, 806, 835, 878 |
| ScrFI | CCNGG | 1 cut(s) | 184 |
| SduI | GDGCHC | 1 cut(s) | 593 |
| SfaNI | GCATC | 2 cut(s) | 110, 774 |
| SfcI | CTRYAG | 1 cut(s) | 540 |
| Sfr303I | CCGCGG | 1 cut(s) | 773 |
| SgrBI | CCGCGG | 1 cut(s) | 773 |
| SgsI | GGCGCGCC | 1 cut(s) | 577 |
| SinI | GGWCC | 4 cut(s) | 2, 555, 806, 835 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 739 |
| SmlI | CTYRAG | 2 cut(s) | 397, 592 |
| SmoI | CTYRAG | 2 cut(s) | 397, 592 |
| Sse9I | AATT | 2 cut(s) | 217, 861 |
| SsiI | CCGC | 9 cut(s) | 414, 418, 453, 617, 683, 703, 770, 772, 812 |
| SspI | AATATT | 1 cut(s) | 600 |
| SspMI | CTAG | 3 cut(s) | 28, 474, 510 |
| SstI | GAGCTC | 1 cut(s) | 593 |
| StyD4I | CCNGG | 1 cut(s) | 182 |
| TaiI | ACGT | 1 cut(s) | 334 |
| TaqI | TCGA | 5 cut(s) | 57, 388, 496, 649, 868 |
| TasI | AATT | 2 cut(s) | 217, 861 |
| TatI | WGTACW | 2 cut(s) | 65, 146 |
| TauI | GCSGC | 3 cut(s) | 417, 420, 775 |
| TfiI | GAWTC | 1 cut(s) | 59 |
| Tru1I | TTAA | 1 cut(s) | 688 |
| Tru9I | TTAA | 1 cut(s) | 688 |
| TscAI | CASTG | 1 cut(s) | 638 |
| TseI | GCWGC | 3 cut(s) | 411, 539, 542 |
| TspDTI | ATGAA | 2 cut(s) | 538, 706 |
| TspRI | CASTG | 1 cut(s) | 638 |
| VpaK11BI | GGWCC | 4 cut(s) | 2, 555, 806, 835 |
| VspI | ATTAAT | 1 cut(s) | 688 |
| XmnI | GAANNNNTTC | 1 cut(s) | 193 |
| XspI | CTAG | 3 cut(s) | 28, 474, 510 |