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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 189 |
| AccB1I | GGYRCC | 1 cut(s) | 157 |
| AccI | GTMKAC | 1 cut(s) | 256 |
| AccII | CGCG | 2 cut(s) | 58, 249 |
| AccIII | TCCGGA | 1 cut(s) | 78 |
| AciI | CCGC | 4 cut(s) | 53, 56, 87, 232 |
| AclWI | GGATC | 1 cut(s) | 13 |
| AcoI | YGGCCR | 1 cut(s) | 133 |
| AfaI | GTAC | 1 cut(s) | 173 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 220, 269 |
| AgsI | TTSAA | 1 cut(s) | 152 |
| AluBI | AGCT | 1 cut(s) | 109 |
| AluI | AGCT | 1 cut(s) | 109 |
| Alw21I | GWGCWC | 1 cut(s) | 111 |
| Alw26I | GTCTC | 1 cut(s) | 68 |
| AlwI | GGATC | 1 cut(s) | 13 |
| Aor13HI | TCCGGA | 1 cut(s) | 78 |
| AoxI | GGCC | 4 cut(s) | 133, 142, 223, 271 |
| ApaI | GGGCCC | 2 cut(s) | 227, 275 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 195, 227 |
| AspLEI | GCGC | 2 cut(s) | 60, 251 |
| AspS9I | GGNCC | 6 cut(s) | 163, 211, 223, 224, 271, 272 |
| AsuC2I | CCSGG | 2 cut(s) | 14, 222 |
| AvaII | GGWCC | 2 cut(s) | 163, 211 |
| BaeGI | GKGCMC | 2 cut(s) | 227, 275 |
| BanI | GGYRCC | 1 cut(s) | 157 |
| BanII | GRGCYC | 3 cut(s) | 111, 227, 275 |
| Bbv12I | GWGCWC | 1 cut(s) | 111 |
| BceAI | ACGGC | 1 cut(s) | 45 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BcnI | CCSGG | 2 cut(s) | 14, 222 |
| BcoDI | GTCTC | 1 cut(s) | 68 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 141 |
| BisI | GCNGC | 2 cut(s) | 56, 87 |
| BlsI | GCNGC | 2 cut(s) | 57, 88 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 222 |
| Bme18I | GGWCC | 2 cut(s) | 163, 211 |
| BmgT120I | GGNCC | 6 cut(s) | 163, 211, 223, 224, 271, 272 |
| BmiI | GGNNCC | 5 cut(s) | 159, 165, 225, 226, 273 |
| BmrFI | CCNGG | 2 cut(s) | 14, 222 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BpuMI | CCSGG | 2 cut(s) | 14, 222 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 90 |
| BsaWI | WCCGGW | 1 cut(s) | 78 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 220, 269 |
| Bse118I | RCCGGY | 5 cut(s) | 44, 131, 135, 160, 251 |
| BseAI | TCCGGA | 1 cut(s) | 78 |
| BseDI | CCNNGG | 2 cut(s) | 12, 90 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 220, 269 |
| BseSI | GKGCMC | 2 cut(s) | 227, 275 |
| BseX3I | CGGCCG | 1 cut(s) | 133 |
| Bsh1236I | CGCG | 2 cut(s) | 58, 249 |
| Bsh1285I | CGRYCG | 2 cut(s) | 136, 256 |
| BshFI | GGCC | 4 cut(s) | 135, 144, 225, 273 |
| BshNI | GGYRCC | 1 cut(s) | 157 |
| BsiEI | CGRYCG | 2 cut(s) | 136, 256 |
| BsiHKAI | GWGCWC | 1 cut(s) | 111 |
| BsiSI | CCGG | 9 cut(s) | 14, 45, 79, 132, 136, 161, 198, 221, 252 |
| BsiWI | CGTACG | 1 cut(s) | 171 |
| BslFI | GGGAC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 220, 269 |
| BsmAI | GTCTC | 1 cut(s) | 68 |
| BsmBI | CGTCTC | 1 cut(s) | 68 |
| BsmFI | GGGAC | 1 cut(s) | 149 |
| BsnI | GGCC | 4 cut(s) | 135, 144, 225, 273 |
| Bsp120I | GGGCCC | 2 cut(s) | 223, 271 |
| Bsp1286I | GDGCHC | 3 cut(s) | 111, 227, 275 |
| Bsp13I | TCCGGA | 1 cut(s) | 78 |
| Bsp143I | GATC | 2 cut(s) | 18, 33 |
| BspACI | CCGC | 4 cut(s) | 53, 56, 87, 232 |
| BspANI | GGCC | 4 cut(s) | 135, 144, 225, 273 |
| BspEI | TCCGGA | 1 cut(s) | 78 |
| BspFNI | CGCG | 2 cut(s) | 58, 249 |
| BspLI | GGNNCC | 5 cut(s) | 159, 165, 225, 226, 273 |
| BspPI | GGATC | 1 cut(s) | 13 |
| BspT107I | GGYRCC | 1 cut(s) | 157 |
| BsrFI | RCCGGY | 5 cut(s) | 44, 131, 135, 160, 251 |
| BssAI | RCCGGY | 5 cut(s) | 44, 131, 135, 160, 251 |
| BssECI | CCNNGG | 2 cut(s) | 12, 90 |
| BssMI | GATC | 2 cut(s) | 18, 33 |
| BstC8I | GCNNGC | 4 cut(s) | 42, 46, 133, 247 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstFNI | CGCG | 2 cut(s) | 58, 249 |
| BstHHI | GCGC | 2 cut(s) | 60, 251 |
| BstKTI | GATC | 2 cut(s) | 21, 36 |
| BstMAI | GTCTC | 1 cut(s) | 68 |
| BstMBI | GATC | 2 cut(s) | 18, 33 |
| BstMCI | CGRYCG | 2 cut(s) | 136, 256 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 23, 141, 231 |
| BstSCI | CCNGG | 2 cut(s) | 12, 220 |
| BstSLI | GKGCMC | 2 cut(s) | 227, 275 |
| BstUI | CGCG | 2 cut(s) | 58, 249 |
| BstZI | CGGCCG | 1 cut(s) | 133 |
| BsuRI | GGCC | 4 cut(s) | 135, 144, 225, 273 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| Cac8I | GCNNGC | 4 cut(s) | 42, 46, 133, 247 |
| CfoI | GCGC | 2 cut(s) | 60, 251 |
| Cfr10I | RCCGGY | 5 cut(s) | 44, 131, 135, 160, 251 |
| Cfr13I | GGNCC | 6 cut(s) | 163, 211, 223, 224, 271, 272 |
| Csp6I | GTAC | 1 cut(s) | 172 |
| CviJI | RGCY | 7 cut(s) | 5, 102, 109, 135, 144, 225, 273 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 102, 109, 135, 144, 225, 273 |
| CviQI | GTAC | 1 cut(s) | 172 |
| DpnI | GATC | 2 cut(s) | 20, 35 |
| DpnII | GATC | 2 cut(s) | 18, 33 |
| EaeI | YGGCCR | 1 cut(s) | 133 |
| EagI | CGGCCG | 1 cut(s) | 133 |
| EciI | GGCGGA | 1 cut(s) | 42 |
| Ecl136II | GAGCTC | 1 cut(s) | 109 |
| EclXI | CGGCCG | 1 cut(s) | 133 |
| Eco24I | GRGCYC | 3 cut(s) | 111, 227, 275 |
| Eco47I | GGWCC | 2 cut(s) | 163, 211 |
| Eco52I | CGGCCG | 1 cut(s) | 133 |
| Eco53kI | GAGCTC | 1 cut(s) | 109 |
| EcoICRI | GAGCTC | 1 cut(s) | 109 |
| EcoO109I | RGGNCCY | 1 cut(s) | 224 |
| EcoT38I | GRGCYC | 3 cut(s) | 111, 227, 275 |
| Esp3I | CGTCTC | 1 cut(s) | 68 |
| FaiI | YATR | 3 cut(s) | 114, 189, 243 |
| FaqI | GGGAC | 1 cut(s) | 149 |
| FblI | GTMKAC | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 2 cut(s) | 56, 87 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 3 cut(s) | 111, 227, 275 |
| Fsp4HI | GCNGC | 2 cut(s) | 56, 87 |
| GlaI | GCGC | 2 cut(s) | 59, 250 |
| GluI | GCNGC | 2 cut(s) | 56, 87 |
| HaeIII | GGCC | 4 cut(s) | 135, 144, 225, 273 |
| HapII | CCGG | 9 cut(s) | 14, 45, 79, 132, 136, 161, 198, 221, 252 |
| HhaI | GCGC | 2 cut(s) | 60, 251 |
| Hin6I | GCGC | 2 cut(s) | 58, 249 |
| HinP1I | GCGC | 2 cut(s) | 58, 249 |
| HincII | GTYRAC | 1 cut(s) | 257 |
| HindII | GTYRAC | 1 cut(s) | 257 |
| HinfI | GANTC | 1 cut(s) | 206 |
| HpaII | CCGG | 9 cut(s) | 14, 45, 79, 132, 136, 161, 198, 221, 252 |
| Hpy166II | GTNNAC | 2 cut(s) | 214, 257 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 183 |
| Hpy188III | TCNNGA | 1 cut(s) | 79 |
| Hpy8I | GTNNAC | 2 cut(s) | 214, 257 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 23, 141, 231 |
| HspAI | GCGC | 2 cut(s) | 58, 249 |
| Kpn2I | TCCGGA | 1 cut(s) | 78 |
| KroI | GCCGGC | 2 cut(s) | 44, 131 |
| KroNI | GCCGGC | 2 cut(s) | 46, 133 |
| Kzo9I | GATC | 2 cut(s) | 18, 33 |
| LmnI | GCTCC | 1 cut(s) | 121 |
| LpnPI | CCDG | 9 cut(s) | 27, 58, 92, 145, 149, 174, 211, 234, 265 |
| LweI | GCATC | 1 cut(s) | 166 |
| MalI | GATC | 2 cut(s) | 20, 35 |
| MboI | GATC | 2 cut(s) | 18, 33 |
| MboII | GAAGA | 1 cut(s) | 215 |
| MfeI | CAATTG | 1 cut(s) | 152 |
| MhlI | GDGCHC | 3 cut(s) | 111, 227, 275 |
| MluCI | AATT | 2 cut(s) | 152, 184 |
| MnlI | CCTC | 6 cut(s) | 19, 32, 85, 177, 228, 270 |
| MreI | CGCCGGCG | 1 cut(s) | 44 |
| MroI | TCCGGA | 1 cut(s) | 78 |
| MroNI | GCCGGC | 2 cut(s) | 44, 131 |
| MspI | CCGG | 9 cut(s) | 14, 45, 79, 132, 136, 161, 198, 221, 252 |
| MspR9I | CCNGG | 2 cut(s) | 14, 222 |
| MunI | CAATTG | 1 cut(s) | 152 |
| MvnI | CGCG | 2 cut(s) | 58, 249 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 23, 141, 231 |
| NaeI | GCCGGC | 2 cut(s) | 46, 133 |
| NciI | CCSGG | 2 cut(s) | 14, 222 |
| NdeII | GATC | 2 cut(s) | 18, 33 |
| NgoMIV | GCCGGC | 2 cut(s) | 44, 131 |
| NlaIV | GGNNCC | 5 cut(s) | 159, 165, 225, 226, 273 |
| NmeAIII | GCCGAG | 2 cut(s) | 78, 115 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 253, 262 |
| PdiI | GCCGGC | 2 cut(s) | 46, 133 |
| PfeI | GAWTC | 1 cut(s) | 206 |
| Pfl23II | CGTACG | 1 cut(s) | 171 |
| PkrI | GCNGC | 2 cut(s) | 57, 88 |
| PsiI | TTATAA | 1 cut(s) | 189 |
| Psp124BI | GAGCTC | 1 cut(s) | 111 |
| PspLI | CGTACG | 1 cut(s) | 171 |
| PspN4I | GGNNCC | 5 cut(s) | 159, 165, 225, 226, 273 |
| PspOMI | GGGCCC | 2 cut(s) | 223, 271 |
| PspPI | GGNCC | 6 cut(s) | 163, 211, 223, 224, 271, 272 |
| RsaI | GTAC | 1 cut(s) | 173 |
| RsaNI | GTAC | 1 cut(s) | 172 |
| SacI | GAGCTC | 1 cut(s) | 111 |
| SalI | GTCGAC | 1 cut(s) | 255 |
| SatI | GCNGC | 2 cut(s) | 56, 87 |
| Sau3AI | GATC | 2 cut(s) | 18, 33 |
| Sau96I | GGNCC | 6 cut(s) | 163, 211, 223, 224, 271, 272 |
| ScrFI | CCNGG | 2 cut(s) | 14, 222 |
| SduI | GDGCHC | 3 cut(s) | 111, 227, 275 |
| SetI | ASST | 3 cut(s) | 111, 262, 283 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 141 |
| SgrAI | CRCCGGYG | 1 cut(s) | 44 |
| SinI | GGWCC | 2 cut(s) | 163, 211 |
| Sse9I | AATT | 2 cut(s) | 152, 184 |
| SsiI | CCGC | 4 cut(s) | 53, 56, 87, 232 |
| SstI | GAGCTC | 1 cut(s) | 111 |
| StyD4I | CCNGG | 2 cut(s) | 12, 220 |
| TaqI | TCGA | 1 cut(s) | 256 |
| TaqII | GACCGA | 1 cut(s) | 199 |
| TasI | AATT | 2 cut(s) | 152, 184 |
| TauI | GCSGC | 2 cut(s) | 58, 89 |
| TfiI | GAWTC | 1 cut(s) | 206 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 2 cut(s) | 163, 211 |
| XmiI | GTMKAC | 1 cut(s) | 256 |