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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 122 |
| AciI | CCGC | 2 cut(s) | 200, 245 |
| AclI | AACGTT | 1 cut(s) | 193 |
| AcoI | YGGCCR | 1 cut(s) | 223 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 300 |
| AgeI | ACCGGT | 1 cut(s) | 88 |
| AluBI | AGCT | 1 cut(s) | 259 |
| AluI | AGCT | 1 cut(s) | 259 |
| Alw21I | GWGCWC | 1 cut(s) | 261 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AoxI | GGCC | 2 cut(s) | 48, 223 |
| AsiGI | ACCGGT | 1 cut(s) | 88 |
| AspS9I | GGNCC | 3 cut(s) | 38, 48, 135 |
| AsuC2I | CCSGG | 1 cut(s) | 6 |
| AsuNHI | GCTAGC | 1 cut(s) | 82 |
| AvaII | GGWCC | 2 cut(s) | 38, 135 |
| BanII | GRGCYC | 1 cut(s) | 261 |
| Bbv12I | GWGCWC | 1 cut(s) | 261 |
| BccI | CCATC | 1 cut(s) | 125 |
| BcnI | CCSGG | 1 cut(s) | 6 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 1 cut(s) | 83 |
| Bme1390I | CCNGG | 1 cut(s) | 6 |
| Bme18I | GGWCC | 2 cut(s) | 38, 135 |
| BmgT120I | GGNCC | 3 cut(s) | 38, 48, 135 |
| BmiI | GGNNCC | 3 cut(s) | 39, 40, 136 |
| BmrFI | CCNGG | 1 cut(s) | 6 |
| BmtI | GCTAGC | 1 cut(s) | 86 |
| Bpu10I | CCTNAGC | 1 cut(s) | 111 |
| BpuMI | CCSGG | 1 cut(s) | 6 |
| Bsa29I | ATCGAT | 1 cut(s) | 120 |
| BsaWI | WCCGGW | 1 cut(s) | 88 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 178, 208 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 300 |
| Bse118I | RCCGGY | 3 cut(s) | 56, 88, 221 |
| BseCI | ATCGAT | 1 cut(s) | 120 |
| BseGI | GGATG | 1 cut(s) | 136 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 300 |
| BseX3I | CGGCCG | 1 cut(s) | 223 |
| Bsh1285I | CGRYCG | 1 cut(s) | 226 |
| BshFI | GGCC | 2 cut(s) | 50, 225 |
| BshTI | ACCGGT | 1 cut(s) | 88 |
| BshVI | ATCGAT | 1 cut(s) | 120 |
| BsiEI | CGRYCG | 1 cut(s) | 226 |
| BsiHKAI | GWGCWC | 1 cut(s) | 261 |
| BsiSI | CCGG | 4 cut(s) | 6, 57, 89, 222 |
| BslFI | GGGAC | 2 cut(s) | 24, 148 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 300 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| BsmFI | GGGAC | 2 cut(s) | 24, 148 |
| BsnI | GGCC | 2 cut(s) | 50, 225 |
| Bsp1286I | GDGCHC | 1 cut(s) | 261 |
| Bsp143I | GATC | 1 cut(s) | 94 |
| BspACI | CCGC | 2 cut(s) | 200, 245 |
| BspANI | GGCC | 2 cut(s) | 50, 225 |
| BspDI | ATCGAT | 1 cut(s) | 120 |
| BspLI | GGNNCC | 3 cut(s) | 39, 40, 136 |
| BspOI | GCTAGC | 1 cut(s) | 86 |
| BsrFI | RCCGGY | 3 cut(s) | 56, 88, 221 |
| BssAI | RCCGGY | 3 cut(s) | 56, 88, 221 |
| BssMI | GATC | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 1 cut(s) | 303 |
| BstC8I | GCNNGC | 4 cut(s) | 58, 69, 80, 84 |
| BstDEI | CTNAG | 1 cut(s) | 111 |
| BstF5I | GGATG | 1 cut(s) | 136 |
| BstKTI | GATC | 1 cut(s) | 97 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 94 |
| BstMCI | CGRYCG | 1 cut(s) | 226 |
| BstNSI | RCATGY | 2 cut(s) | 71, 82 |
| BstSCI | CCNGG | 1 cut(s) | 4 |
| BstZI | CGGCCG | 1 cut(s) | 223 |
| Bsu15I | ATCGAT | 1 cut(s) | 120 |
| BsuRI | GGCC | 2 cut(s) | 50, 225 |
| BsuTUI | ATCGAT | 1 cut(s) | 120 |
| BtsCI | GGATG | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 4 cut(s) | 58, 69, 80, 84 |
| Cfr10I | RCCGGY | 3 cut(s) | 56, 88, 221 |
| Cfr13I | GGNCC | 3 cut(s) | 38, 48, 135 |
| ClaI | ATCGAT | 1 cut(s) | 120 |
| CspAI | ACCGGT | 1 cut(s) | 88 |
| CviAII | CATG | 2 cut(s) | 68, 79 |
| CviJI | RGCY | 4 cut(s) | 50, 110, 225, 259 |
| CviKI_1 | RGCY | 4 cut(s) | 50, 110, 225, 259 |
| DdeI | CTNAG | 1 cut(s) | 111 |
| DpnI | GATC | 1 cut(s) | 96 |
| DpnII | GATC | 1 cut(s) | 94 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 122 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 122 |
| EaeI | YGGCCR | 1 cut(s) | 223 |
| EagI | CGGCCG | 1 cut(s) | 223 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| EclXI | CGGCCG | 1 cut(s) | 223 |
| Eco24I | GRGCYC | 1 cut(s) | 261 |
| Eco47I | GGWCC | 2 cut(s) | 38, 135 |
| Eco52I | CGGCCG | 1 cut(s) | 223 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoO109I | RGGNCCY | 1 cut(s) | 38 |
| EcoT38I | GRGCYC | 1 cut(s) | 261 |
| FaeI | CATG | 2 cut(s) | 71, 82 |
| FaiI | YATR | 3 cut(s) | 69, 80, 150 |
| FaqI | GGGAC | 2 cut(s) | 24, 148 |
| FatI | CATG | 2 cut(s) | 67, 78 |
| FokI | GGATG | 1 cut(s) | 143 |
| FriOI | GRGCYC | 1 cut(s) | 261 |
| FspBI | CTAG | 1 cut(s) | 83 |
| HaeIII | GGCC | 2 cut(s) | 50, 225 |
| HapII | CCGG | 4 cut(s) | 6, 57, 89, 222 |
| Hin1II | CATG | 2 cut(s) | 71, 82 |
| HinfI | GANTC | 2 cut(s) | 228, 272 |
| HpaII | CCGG | 4 cut(s) | 6, 57, 89, 222 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 232 |
| Hpy99I | CGWCG | 1 cut(s) | 286 |
| HpyAV | CCTTC | 4 cut(s) | 53, 61, 137, 219 |
| HpyCH4III | ACNGT | 1 cut(s) | 303 |
| HpyCH4IV | ACGT | 1 cut(s) | 193 |
| HpyCH4V | TGCA | 1 cut(s) | 71 |
| HpyF3I | CTNAG | 1 cut(s) | 111 |
| HpySE526I | ACGT | 1 cut(s) | 193 |
| Hsp92II | CATG | 2 cut(s) | 71, 82 |
| KflI | GGGWCCC | 1 cut(s) | 38 |
| KroI | GCCGGC | 1 cut(s) | 56 |
| KroNI | GCCGGC | 1 cut(s) | 58 |
| Kzo9I | GATC | 1 cut(s) | 94 |
| LmnI | GCTCC | 1 cut(s) | 256 |
| LpnPI | CCDG | 4 cut(s) | 19, 70, 102, 235 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 1 cut(s) | 193 |
| MaeIII | GTNAC | 1 cut(s) | 250 |
| MalI | GATC | 1 cut(s) | 96 |
| MboI | GATC | 1 cut(s) | 94 |
| MboII | GAAGA | 4 cut(s) | 89, 152, 270, 281 |
| MhlI | GDGCHC | 1 cut(s) | 261 |
| MluCI | AATT | 1 cut(s) | 177 |
| MnlI | CCTC | 3 cut(s) | 30, 145, 223 |
| MroNI | GCCGGC | 1 cut(s) | 56 |
| MseI | TTAA | 1 cut(s) | 204 |
| MspI | CCGG | 4 cut(s) | 6, 57, 89, 222 |
| MspR9I | CCNGG | 1 cut(s) | 6 |
| NaeI | GCCGGC | 1 cut(s) | 58 |
| NciI | CCSGG | 1 cut(s) | 6 |
| NdeII | GATC | 1 cut(s) | 94 |
| NgoMIV | GCCGGC | 1 cut(s) | 56 |
| NheI | GCTAGC | 1 cut(s) | 82 |
| NlaIII | CATG | 2 cut(s) | 71, 82 |
| NlaIV | GGNNCC | 3 cut(s) | 39, 40, 136 |
| NspI | RCATGY | 2 cut(s) | 71, 82 |
| PaeI | GCATGC | 2 cut(s) | 71, 82 |
| PdiI | GCCGGC | 1 cut(s) | 58 |
| PfeI | GAWTC | 2 cut(s) | 228, 272 |
| PinAI | ACCGGT | 1 cut(s) | 88 |
| PpuMI | RGGWCCY | 1 cut(s) | 38 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| Psp1406I | AACGTT | 1 cut(s) | 193 |
| Psp5II | RGGWCCY | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 3 cut(s) | 39, 40, 136 |
| PspPI | GGNCC | 3 cut(s) | 38, 48, 135 |
| PspPPI | RGGWCCY | 1 cut(s) | 38 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SaqAI | TTAA | 1 cut(s) | 204 |
| Sau3AI | GATC | 1 cut(s) | 94 |
| Sau96I | GGNCC | 3 cut(s) | 38, 48, 135 |
| ScrFI | CCNGG | 1 cut(s) | 6 |
| SduI | GDGCHC | 1 cut(s) | 261 |
| SetI | ASST | 3 cut(s) | 22, 196, 261 |
| SinI | GGWCC | 2 cut(s) | 38, 135 |
| SphI | GCATGC | 2 cut(s) | 71, 82 |
| Sse9I | AATT | 1 cut(s) | 177 |
| SsiI | CCGC | 2 cut(s) | 200, 245 |
| SspMI | CTAG | 1 cut(s) | 83 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StyD4I | CCNGG | 1 cut(s) | 4 |
| TaaI | ACNGT | 1 cut(s) | 303 |
| TaiI | ACGT | 1 cut(s) | 196 |
| TaqI | TCGA | 6 cut(s) | 120, 215, 231, 261, 267, 281 |
| TaqII | GACCGA | 1 cut(s) | 152 |
| TasI | AATT | 1 cut(s) | 177 |
| TfiI | GAWTC | 2 cut(s) | 228, 272 |
| Tru1I | TTAA | 1 cut(s) | 204 |
| Tru9I | TTAA | 1 cut(s) | 204 |
| TspDTI | ATGAA | 1 cut(s) | 264 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 2 cut(s) | 38, 135 |
| XceI | RCATGY | 2 cut(s) | 71, 82 |
| XspI | CTAG | 1 cut(s) | 83 |