Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 701 |
| AccB1I | GGYRCC | 1 cut(s) | 701 |
| AclWI | GGATC | 5 cut(s) | 753, 766, 914, 927, 1045 |
| AcoI | YGGCCR | 2 cut(s) | 448, 667 |
| AcsI | RAATTY | 1 cut(s) | 779 |
| AcuI | CTGAAG | 1 cut(s) | 1230 |
| AdeI | CACNNNGTG | 1 cut(s) | 299 |
| AfaI | GTAC | 4 cut(s) | 444, 584, 703, 715 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 174, 522, 698, 916, 1174 |
| AgeI | ACCGGT | 1 cut(s) | 691 |
| AgsI | TTSAA | 2 cut(s) | 778, 899 |
| AjnI | CCWGG | 4 cut(s) | 127, 576, 1082, 1100 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 738, 770 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 891, 923 |
| AluBI | AGCT | 4 cut(s) | 144, 501, 852, 1012 |
| AluI | AGCT | 4 cut(s) | 144, 501, 852, 1012 |
| Alw26I | GTCTC | 3 cut(s) | 1196, 1243, 1249 |
| AlwI | GGATC | 5 cut(s) | 753, 766, 914, 927, 1045 |
| Ama87I | CYCGRG | 1 cut(s) | 1043 |
| AoxI | GGCC | 6 cut(s) | 85, 448, 654, 667, 1019, 1176 |
| ApeKI | GCWGC | 3 cut(s) | 498, 816, 1079 |
| ApoI | RAATTY | 1 cut(s) | 779 |
| AseI | ATTAAT | 1 cut(s) | 873 |
| AsiGI | ACCGGT | 1 cut(s) | 691 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1114 |
| Asp718I | GGTACC | 1 cut(s) | 701 |
| AspA2I | CCTAGG | 1 cut(s) | 914 |
| AspLEI | GCGC | 6 cut(s) | 73, 235, 941, 943, 945, 962 |
| AspS9I | GGNCC | 4 cut(s) | 632, 655, 1020, 1176 |
| AsuHPI | GGTGA | 1 cut(s) | 979 |
| AsuII | TTCGAA | 1 cut(s) | 744 |
| AvaI | CYCGRG | 1 cut(s) | 1043 |
| AvaII | GGWCC | 1 cut(s) | 632 |
| AvrII | CCTAGG | 1 cut(s) | 914 |
| BalI | TGGCCA | 1 cut(s) | 450 |
| BamHI | GGATCC | 2 cut(s) | 758, 919 |
| BanI | GGYRCC | 1 cut(s) | 701 |
| BanII | GRGCYC | 2 cut(s) | 438, 684 |
| BauI | CACGAG | 1 cut(s) | 294 |
| BbvI | GCAGC | 3 cut(s) | 510, 803, 1066 |
| BccI | CCATC | 5 cut(s) | 65, 101, 200, 431, 1292 |
| BceAI | ACGGC | 2 cut(s) | 100, 682 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 56, 90 |
| BciT130I | CCWGG | 4 cut(s) | 129, 578, 1084, 1102 |
| BciVI | GTATCC | 1 cut(s) | 1314 |
| BclI | TGATCA | 1 cut(s) | 1219 |
| BcoDI | GTCTC | 3 cut(s) | 1196, 1243, 1249 |
| BfaI | CTAG | 3 cut(s) | 141, 915, 1125 |
| BfmI | CTRYAG | 1 cut(s) | 928 |
| BfuI | GTATCC | 1 cut(s) | 1314 |
| BglII | AGATCT | 1 cut(s) | 237 |
| BisI | GCNGC | 9 cut(s) | 496, 499, 651, 654, 801, 817, 858, 958, 1080 |
| BlnI | CCTAGG | 1 cut(s) | 914 |
| BlsI | GCNGC | 9 cut(s) | 497, 500, 652, 655, 802, 818, 859, 959, 1081 |
| BmcAI | AGTACT | 1 cut(s) | 584 |
| Bme1390I | CCNGG | 4 cut(s) | 129, 578, 1084, 1102 |
| Bme18I | GGWCC | 1 cut(s) | 632 |
| BmeT110I | CYCGRG | 1 cut(s) | 1043 |
| BmgT120I | GGNCC | 4 cut(s) | 632, 655, 1020, 1176 |
| BmiI | GGNNCC | 7 cut(s) | 514, 703, 760, 908, 921, 1117, 1191 |
| BmrFI | CCNGG | 4 cut(s) | 129, 578, 1084, 1102 |
| BmrI | ACTGGG | 2 cut(s) | 423, 1183 |
| BmsI | GCATC | 3 cut(s) | 163, 393, 1303 |
| BmuI | ACTGGG | 2 cut(s) | 423, 1183 |
| BpmI | CTGGAG | 3 cut(s) | 150, 599, 1273 |
| Bpu14I | TTCGAA | 1 cut(s) | 744 |
| BpuEI | CTTGAG | 1 cut(s) | 471 |
| Bsa29I | ATCGAT | 1 cut(s) | 273 |
| BsaAI | YACGTR | 1 cut(s) | 442 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1218 |
| BsaI | GGTCTC | 1 cut(s) | 1196 |
| BsaJI | CCNNGG | 4 cut(s) | 521, 635, 651, 914 |
| BsaWI | WCCGGW | 2 cut(s) | 560, 691 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1082, 1112, 1114, 1144 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 174, 522, 698, 916, 1174 |
| Bse118I | RCCGGY | 1 cut(s) | 691 |
| Bse1I | ACTGG | 7 cut(s) | 418, 590, 634, 830, 1022, 1054, 1178 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1218 |
| BseBI | CCWGG | 4 cut(s) | 129, 578, 1084, 1102 |
| BseCI | ATCGAT | 1 cut(s) | 273 |
| BseDI | CCNNGG | 4 cut(s) | 521, 635, 651, 914 |
| BseGI | GGATG | 6 cut(s) | 57, 93, 154, 399, 736, 1270 |
| BseJI | GATNNNNATC | 1 cut(s) | 1218 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 174, 522, 698, 916, 1174 |
| BseMII | CTCAG | 5 cut(s) | 22, 130, 278, 987, 1015 |
| BseNI | ACTGG | 7 cut(s) | 418, 590, 634, 830, 1022, 1054, 1178 |
| BsePI | GCGCGC | 2 cut(s) | 939, 941 |
| BseXI | GCAGC | 3 cut(s) | 510, 803, 1066 |
| BseYI | CCCAGC | 1 cut(s) | 144 |
| BsgI | GTGCAG | 2 cut(s) | 592, 1126 |
| Bsh1285I | CGRYCG | 1 cut(s) | 561 |
| BshFI | GGCC | 6 cut(s) | 87, 450, 656, 669, 1021, 1178 |
| BshNI | GGYRCC | 1 cut(s) | 701 |
| BshTI | ACCGGT | 1 cut(s) | 691 |
| BshVI | ATCGAT | 1 cut(s) | 273 |
| BsiEI | CGRYCG | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1043 |
| BsiSI | CCGG | 3 cut(s) | 30, 561, 692 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 174, 522, 698, 916, 1174 |
| BsmAI | GTCTC | 3 cut(s) | 1196, 1243, 1249 |
| BsmI | GAATGC | 2 cut(s) | 178, 1146 |
| BsnI | GGCC | 6 cut(s) | 87, 450, 656, 669, 1021, 1178 |
| Bso31I | GGTCTC | 1 cut(s) | 1196 |
| BsoBI | CYCGRG | 1 cut(s) | 1043 |
| Bsp119I | TTCGAA | 1 cut(s) | 744 |
| Bsp1286I | GDGCHC | 2 cut(s) | 438, 684 |
| Bsp143I | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| Bsp68I | TCGCGA | 2 cut(s) | 222, 1280 |
| BspANI | GGCC | 6 cut(s) | 87, 450, 656, 669, 1021, 1178 |
| BspCNI | CTCAG | 5 cut(s) | 21, 129, 277, 986, 1014 |
| BspDI | ATCGAT | 1 cut(s) | 273 |
| BspLI | GGNNCC | 7 cut(s) | 514, 703, 760, 908, 921, 1117, 1191 |
| BspPI | GGATC | 5 cut(s) | 753, 766, 914, 927, 1045 |
| BspQI | GCTCTTC | 1 cut(s) | 219 |
| BspT104I | TTCGAA | 1 cut(s) | 744 |
| BspT107I | GGYRCC | 1 cut(s) | 701 |
| BspTNI | GGTCTC | 1 cut(s) | 1196 |
| BsrFI | RCCGGY | 1 cut(s) | 691 |
| BsrI | ACTGG | 7 cut(s) | 418, 590, 634, 830, 1022, 1054, 1178 |
| BssAI | RCCGGY | 1 cut(s) | 691 |
| BssECI | CCNNGG | 4 cut(s) | 521, 635, 651, 914 |
| BssHII | GCGCGC | 2 cut(s) | 939, 941 |
| BssMI | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| BssSI | CACGAG | 1 cut(s) | 294 |
| BssT1I | CCWWGG | 2 cut(s) | 635, 914 |
| Bst2BI | CACGAG | 1 cut(s) | 294 |
| Bst2UI | CCWGG | 4 cut(s) | 129, 578, 1084, 1102 |
| Bst4CI | ACNGT | 3 cut(s) | 463, 713, 751 |
| Bst6I | CTCTTC | 2 cut(s) | 219, 1280 |
| BstBAI | YACGTR | 1 cut(s) | 442 |
| BstBI | TTCGAA | 1 cut(s) | 744 |
| BstDEI | CTNAG | 5 cut(s) | 8, 116, 264, 973, 1001 |
| BstDSI | CCRYGG | 2 cut(s) | 521, 651 |
| BstEII | GGTNACC | 1 cut(s) | 417 |
| BstF5I | GGATG | 6 cut(s) | 57, 93, 154, 399, 736, 1270 |
| BstHHI | GCGC | 6 cut(s) | 73, 235, 941, 943, 945, 962 |
| BstKTI | GATC | 9 cut(s) | 240, 277, 761, 922, 937, 966, 1053, 1165, 1222 |
| BstMAI | GTCTC | 3 cut(s) | 1196, 1243, 1249 |
| BstMBI | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| BstMCI | CGRYCG | 1 cut(s) | 561 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 241, 381, 507, 947, 1018 |
| BstNI | CCWGG | 4 cut(s) | 129, 578, 1084, 1102 |
| BstNSI | RCATGY | 1 cut(s) | 29 |
| BstPI | GGTNACC | 1 cut(s) | 417 |
| BstSCI | CCNGG | 4 cut(s) | 127, 576, 1082, 1100 |
| BstSFI | CTRYAG | 1 cut(s) | 928 |
| BstSNI | TACGTA | 1 cut(s) | 442 |
| BstV1I | GCAGC | 3 cut(s) | 510, 803, 1066 |
| BstX2I | RGATCY | 3 cut(s) | 237, 758, 919 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1186 |
| BstYI | RGATCY | 3 cut(s) | 237, 758, 919 |
| Bsu15I | ATCGAT | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 1314 |
| BsuRI | GGCC | 6 cut(s) | 87, 450, 656, 669, 1021, 1178 |
| BsuTUI | ATCGAT | 1 cut(s) | 273 |
| BtgI | CCRYGG | 2 cut(s) | 521, 651 |
| BtsCI | GGATG | 6 cut(s) | 57, 93, 154, 399, 736, 1270 |
| BtsI | GCAGTG | 1 cut(s) | 44 |
| BtsIMutI | CAGTG | 5 cut(s) | 44, 459, 627, 823, 1171 |
| BtuMI | TCGCGA | 2 cut(s) | 222, 1280 |
| CfoI | GCGC | 6 cut(s) | 73, 235, 941, 943, 945, 962 |
| Cfr10I | RCCGGY | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 4 cut(s) | 632, 655, 1020, 1176 |
| Cfr42I | CCGCGG | 2 cut(s) | 524, 654 |
| ClaI | ATCGAT | 1 cut(s) | 273 |
| CseI | GACGC | 1 cut(s) | 77 |
| Csp6I | GTAC | 4 cut(s) | 443, 583, 702, 714 |
| CspAI | ACCGGT | 1 cut(s) | 691 |
| CviAII | CATG | 5 cut(s) | 26, 213, 446, 902, 969 |
| CviQI | GTAC | 4 cut(s) | 443, 583, 702, 714 |
| DdeI | CTNAG | 5 cut(s) | 8, 116, 264, 973, 1001 |
| DpnI | GATC | 9 cut(s) | 239, 276, 760, 921, 936, 965, 1052, 1164, 1221 |
| DpnII | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| DraIII | CACNNNGTG | 1 cut(s) | 299 |
| EaeI | YGGCCR | 2 cut(s) | 448, 667 |
| Eam1104I | CTCTTC | 2 cut(s) | 219, 1280 |
| EarI | CTCTTC | 2 cut(s) | 219, 1280 |
| EciI | GGCGGA | 3 cut(s) | 604, 787, 1122 |
| Eco105I | TACGTA | 1 cut(s) | 442 |
| Eco130I | CCWWGG | 2 cut(s) | 635, 914 |
| Eco24I | GRGCYC | 2 cut(s) | 438, 684 |
| Eco31I | GGTCTC | 1 cut(s) | 1196 |
| Eco47I | GGWCC | 1 cut(s) | 632 |
| Eco57I | CTGAAG | 1 cut(s) | 1230 |
| Eco88I | CYCGRG | 1 cut(s) | 1043 |
| Eco91I | GGTNACC | 1 cut(s) | 417 |
| EcoO65I | GGTNACC | 1 cut(s) | 417 |
| EcoRII | CCWGG | 4 cut(s) | 127, 576, 1082, 1100 |
| EcoT14I | CCWWGG | 2 cut(s) | 635, 914 |
| EcoT38I | GRGCYC | 2 cut(s) | 438, 684 |
| ErhI | CCWWGG | 2 cut(s) | 635, 914 |
| FaeI | CATG | 5 cut(s) | 29, 216, 449, 905, 972 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 587, 619 |
| FatI | CATG | 5 cut(s) | 25, 212, 445, 901, 968 |
| FauI | CCCGC | 2 cut(s) | 528, 894 |
| FbaI | TGATCA | 1 cut(s) | 1219 |
| Fnu4HI | GCNGC | 9 cut(s) | 496, 499, 651, 654, 801, 817, 858, 958, 1080 |
| FokI | GGATG | 6 cut(s) | 44, 80, 141, 386, 723, 1277 |
| FriOI | GRGCYC | 2 cut(s) | 438, 684 |
| Fsp4HI | GCNGC | 9 cut(s) | 496, 499, 651, 654, 801, 817, 858, 958, 1080 |
| FspBI | CTAG | 3 cut(s) | 141, 915, 1125 |
| GlaI | GCGC | 6 cut(s) | 72, 234, 940, 942, 944, 961 |
| GluI | GCNGC | 9 cut(s) | 496, 499, 651, 654, 801, 817, 858, 958, 1080 |
| GsaI | CCCAGC | 1 cut(s) | 148 |
| GsuI | CTGGAG | 3 cut(s) | 150, 599, 1273 |
| HaeIII | GGCC | 6 cut(s) | 87, 450, 656, 669, 1021, 1178 |
| HapII | CCGG | 3 cut(s) | 30, 561, 692 |
| HgaI | GACGC | 1 cut(s) | 77 |
| HhaI | GCGC | 6 cut(s) | 73, 235, 941, 943, 945, 962 |
| Hin1II | CATG | 5 cut(s) | 29, 216, 449, 905, 972 |
| Hin6I | GCGC | 6 cut(s) | 71, 233, 939, 941, 943, 960 |
| HinP1I | GCGC | 6 cut(s) | 71, 233, 939, 941, 943, 960 |
| HincII | GTYRAC | 1 cut(s) | 531 |
| HindII | GTYRAC | 1 cut(s) | 531 |
| HinfI | GANTC | 5 cut(s) | 12, 53, 369, 774, 882 |
| HpaII | CCGG | 3 cut(s) | 30, 561, 692 |
| HphI | GGTGA | 1 cut(s) | 979 |
| Hpy166II | GTNNAC | 2 cut(s) | 531, 1246 |
| Hpy188I | TCNGA | 5 cut(s) | 11, 98, 119, 267, 976 |
| Hpy188III | TCNNGA | 5 cut(s) | 221, 294, 337, 771, 1279 |
| Hpy8I | GTNNAC | 2 cut(s) | 531, 1246 |
| Hpy99I | CGWCG | 4 cut(s) | 71, 102, 808, 1199 |
| HpyAV | CCTTC | 2 cut(s) | 583, 715 |
| HpyCH4III | ACNGT | 3 cut(s) | 463, 713, 751 |
| HpyCH4IV | ACGT | 1 cut(s) | 441 |
| HpyCH4V | TGCA | 6 cut(s) | 154, 200, 594, 609, 1107, 1154 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 241, 381, 507, 947, 1018 |
| HpyF3I | CTNAG | 5 cut(s) | 8, 116, 264, 973, 1001 |
| HpySE526I | ACGT | 1 cut(s) | 441 |
| Hsp92II | CATG | 5 cut(s) | 29, 216, 449, 905, 972 |
| HspAI | GCGC | 6 cut(s) | 71, 233, 939, 941, 943, 960 |
| KpnI | GGTACC | 1 cut(s) | 705 |
| Ksp22I | TGATCA | 1 cut(s) | 1219 |
| KspI | CCGCGG | 2 cut(s) | 524, 654 |
| Kzo9I | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| LguI | GCTCTTC | 1 cut(s) | 219 |
| LmnI | GCTCC | 2 cut(s) | 506, 1195 |
| Lsp1109I | GCAGC | 3 cut(s) | 510, 803, 1066 |
| LweI | GCATC | 3 cut(s) | 163, 393, 1303 |
| MaeI | CTAG | 3 cut(s) | 141, 915, 1125 |
| MaeII | ACGT | 1 cut(s) | 441 |
| MaeIII | GTNAC | 2 cut(s) | 417, 463 |
| MalI | GATC | 9 cut(s) | 239, 276, 760, 921, 936, 965, 1052, 1164, 1221 |
| MauBI | CGCGCGCG | 1 cut(s) | 939 |
| MboI | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| MboII | GAAGA | 8 cut(s) | 132, 236, 595, 1007, 1223, 1267, 1279, 1358 |
| MfeI | CAATTG | 1 cut(s) | 304 |
| MflI | RGATCY | 3 cut(s) | 237, 758, 919 |
| MhlI | GDGCHC | 2 cut(s) | 438, 684 |
| MlsI | TGGCCA | 1 cut(s) | 450 |
| MluCI | AATT | 7 cut(s) | 304, 452, 567, 779, 1087, 1110, 1325 |
| MluNI | TGGCCA | 1 cut(s) | 450 |
| MlyI | GAGTC | 1 cut(s) | 6 |
| MmeI | TCCRAC | 1 cut(s) | 121 |
| Mox20I | TGGCCA | 1 cut(s) | 450 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1114 |
| MscI | TGGCCA | 1 cut(s) | 450 |
| MseI | TTAA | 2 cut(s) | 846, 873 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| Msp20I | TGGCCA | 1 cut(s) | 450 |
| MspA1I | CMGCKG | 4 cut(s) | 523, 653, 816, 1208 |
| MspI | CCGG | 3 cut(s) | 30, 561, 692 |
| MspR9I | CCNGG | 4 cut(s) | 129, 578, 1084, 1102 |
| MunI | CAATTG | 1 cut(s) | 304 |
| Mva1269I | GAATGC | 2 cut(s) | 178, 1146 |
| MvaI | CCWGG | 4 cut(s) | 129, 578, 1084, 1102 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 241, 381, 507, 947, 1018 |
| NdeII | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| NlaIII | CATG | 5 cut(s) | 29, 216, 449, 905, 972 |
| NlaIV | GGNNCC | 7 cut(s) | 514, 703, 760, 908, 921, 1117, 1191 |
| NmuCI | GTSAC | 1 cut(s) | 463 |
| NruI | TCGCGA | 2 cut(s) | 222, 1280 |
| NspI | RCATGY | 1 cut(s) | 29 |
| NspV | TTCGAA | 1 cut(s) | 744 |
| PauI | GCGCGC | 2 cut(s) | 939, 941 |
| PciSI | GCTCTTC | 1 cut(s) | 219 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 672 |
| PctI | GAATGC | 2 cut(s) | 178, 1146 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1114 |
| PfeI | GAWTC | 4 cut(s) | 53, 369, 774, 882 |
| PflFI | GACNNNGTC | 1 cut(s) | 461 |
| PfoI | TCCNGGA | 1 cut(s) | 576 |
| PinAI | ACCGGT | 1 cut(s) | 691 |
| PkrI | GCNGC | 9 cut(s) | 497, 500, 652, 655, 802, 818, 859, 959, 1081 |
| PleI | GAGTC | 1 cut(s) | 6 |
| PpsI | GAGTC | 1 cut(s) | 6 |
| Ppu21I | YACGTR | 1 cut(s) | 442 |
| PshBI | ATTAAT | 1 cut(s) | 873 |
| Psp6I | CCWGG | 4 cut(s) | 127, 576, 1082, 1100 |
| PspEI | GGTNACC | 1 cut(s) | 417 |
| PspFI | CCCAGC | 1 cut(s) | 144 |
| PspGI | CCWGG | 4 cut(s) | 127, 576, 1082, 1100 |
| PspN4I | GGNNCC | 7 cut(s) | 514, 703, 760, 908, 921, 1117, 1191 |
| PspPI | GGNCC | 4 cut(s) | 632, 655, 1020, 1176 |
| PsuI | RGATCY | 3 cut(s) | 237, 758, 919 |
| PsyI | GACNNNGTC | 1 cut(s) | 461 |
| PteI | GCGCGC | 2 cut(s) | 939, 941 |
| RruI | TCGCGA | 2 cut(s) | 222, 1280 |
| RsaI | GTAC | 4 cut(s) | 444, 584, 703, 715 |
| RsaNI | GTAC | 4 cut(s) | 443, 583, 702, 714 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SacII | CCGCGG | 2 cut(s) | 524, 654 |
| SapI | GCTCTTC | 1 cut(s) | 219 |
| SaqAI | TTAA | 2 cut(s) | 846, 873 |
| SatI | GCNGC | 9 cut(s) | 496, 499, 651, 654, 801, 817, 858, 958, 1080 |
| Sau3AI | GATC | 9 cut(s) | 237, 274, 758, 919, 934, 963, 1050, 1162, 1219 |
| Sau96I | GGNCC | 4 cut(s) | 632, 655, 1020, 1176 |
| ScaI | AGTACT | 1 cut(s) | 584 |
| SchI | GAGTC | 1 cut(s) | 6 |
| ScrFI | CCNGG | 4 cut(s) | 129, 578, 1084, 1102 |
| SduI | GDGCHC | 2 cut(s) | 438, 684 |
| SfaNI | GCATC | 3 cut(s) | 163, 393, 1303 |
| SfcI | CTRYAG | 1 cut(s) | 928 |
| Sfr303I | CCGCGG | 2 cut(s) | 524, 654 |
| SfuI | TTCGAA | 1 cut(s) | 744 |
| SgrBI | CCGCGG | 2 cut(s) | 524, 654 |
| SinI | GGWCC | 1 cut(s) | 632 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| SmlI | CTYRAG | 1 cut(s) | 486 |
| SmoI | CTYRAG | 1 cut(s) | 486 |
| SnaBI | TACGTA | 1 cut(s) | 442 |
| Sse9I | AATT | 7 cut(s) | 304, 452, 567, 779, 1087, 1110, 1325 |
| SspMI | CTAG | 3 cut(s) | 141, 915, 1125 |
| StyD4I | CCNGG | 4 cut(s) | 127, 576, 1082, 1100 |
| StyI | CCWWGG | 2 cut(s) | 635, 914 |
| TaaI | ACNGT | 3 cut(s) | 463, 713, 751 |
| TaiI | ACGT | 1 cut(s) | 444 |
| TaqI | TCGA | 8 cut(s) | 273, 367, 426, 476, 744, 764, 1161, 1197 |
| TasI | AATT | 7 cut(s) | 304, 452, 567, 779, 1087, 1110, 1325 |
| TatI | WGTACW | 1 cut(s) | 582 |
| TauI | GCSGC | 6 cut(s) | 498, 653, 656, 803, 860, 960 |
| TfiI | GAWTC | 4 cut(s) | 53, 369, 774, 882 |
| Tru1I | TTAA | 2 cut(s) | 846, 873 |
| Tru9I | TTAA | 2 cut(s) | 846, 873 |
| TscAI | CASTG | 5 cut(s) | 51, 466, 634, 830, 1178 |
| TseFI | GTSAC | 1 cut(s) | 463 |
| TseI | GCWGC | 3 cut(s) | 498, 816, 1079 |
| Tsp45I | GTSAC | 1 cut(s) | 463 |
| TspDTI | ATGAA | 2 cut(s) | 589, 1284 |
| TspGWI | ACGGA | 2 cut(s) | 218, 303 |
| TspRI | CASTG | 5 cut(s) | 51, 466, 634, 830, 1178 |
| Tth111I | GACNNNGTC | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 1 cut(s) | 632 |
| VspI | ATTAAT | 1 cut(s) | 873 |
| XapI | RAATTY | 1 cut(s) | 779 |
| XceI | RCATGY | 1 cut(s) | 29 |
| XmaJI | CCTAGG | 1 cut(s) | 914 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1114 |
| XspI | CTAG | 3 cut(s) | 141, 915, 1125 |
| ZrmI | AGTACT | 1 cut(s) | 584 |