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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 169, 574 |
| AccI | GTMKAC | 1 cut(s) | 152 |
| AccII | CGCG | 2 cut(s) | 306, 657 |
| AciI | CCGC | 4 cut(s) | 79, 572, 655, 925 |
| AclWI | GGATC | 3 cut(s) | 120, 133, 283 |
| AcsI | RAATTY | 1 cut(s) | 399 |
| AcuI | CTGAAG | 3 cut(s) | 56, 660, 734 |
| AcyI | GRCGYC | 1 cut(s) | 170 |
| AfaI | GTAC | 1 cut(s) | 237 |
| AfeI | AGCGCT | 1 cut(s) | 345 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 331, 536, 559 |
| AgsI | TTSAA | 3 cut(s) | 245, 350, 743 |
| AjnI | CCWGG | 6 cut(s) | 165, 622, 644, 849, 858, 906 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 906, 938 |
| AluBI | AGCT | 5 cut(s) | 116, 261, 663, 884, 900 |
| AluI | AGCT | 5 cut(s) | 116, 261, 663, 884, 900 |
| Alw26I | GTCTC | 2 cut(s) | 615, 624 |
| AlwI | GGATC | 3 cut(s) | 120, 133, 283 |
| Ama87I | CYCGRG | 1 cut(s) | 593 |
| Aor51HI | AGCGCT | 1 cut(s) | 345 |
| AoxI | GGCC | 4 cut(s) | 753, 846, 864, 940 |
| ApeKI | GCWGC | 6 cut(s) | 209, 434, 437, 440, 884, 887 |
| ApoI | RAATTY | 1 cut(s) | 399 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 354 |
| AspLEI | GCGC | 3 cut(s) | 172, 346, 653 |
| AspS9I | GGNCC | 6 cut(s) | 102, 627, 732, 754, 847, 865 |
| AsuC2I | CCSGG | 2 cut(s) | 293, 686 |
| AsuHPI | GGTGA | 3 cut(s) | 380, 470, 896 |
| AvaI | CYCGRG | 1 cut(s) | 593 |
| AvaII | GGWCC | 3 cut(s) | 102, 627, 732 |
| AxyI | CCTNAGG | 1 cut(s) | 267 |
| BaeGI | GKGCMC | 1 cut(s) | 692 |
| BamHI | GGATCC | 1 cut(s) | 125 |
| BanI | GGYRCC | 2 cut(s) | 169, 574 |
| BauI | CACGAG | 1 cut(s) | 407 |
| BbvI | GCAGC | 6 cut(s) | 196, 421, 424, 427, 871, 874 |
| BccI | CCATC | 5 cut(s) | 209, 473, 515, 600, 732 |
| BceAI | ACGGC | 1 cut(s) | 789 |
| BciT130I | CCWGG | 6 cut(s) | 167, 624, 646, 851, 860, 908 |
| BcnI | CCSGG | 2 cut(s) | 293, 686 |
| BcoDI | GTCTC | 2 cut(s) | 615, 624 |
| BfaI | CTAG | 5 cut(s) | 89, 233, 359, 603, 777 |
| BfmI | CTRYAG | 3 cut(s) | 318, 441, 888 |
| BfoI | RGCGCY | 2 cut(s) | 173, 347 |
| BglII | AGATCT | 1 cut(s) | 745 |
| BisI | GCNGC | 6 cut(s) | 210, 435, 438, 441, 885, 888 |
| BlsI | GCNGC | 6 cut(s) | 211, 436, 439, 442, 886, 889 |
| Bme1390I | CCNGG | 8 cut(s) | 167, 293, 624, 646, 686, 851, 860, 908 |
| Bme18I | GGWCC | 3 cut(s) | 102, 627, 732 |
| BmeT110I | CYCGRG | 1 cut(s) | 593 |
| BmgT120I | GGNCC | 6 cut(s) | 102, 627, 732, 754, 847, 865 |
| BmrFI | CCNGG | 8 cut(s) | 167, 293, 624, 646, 686, 851, 860, 908 |
| BmsI | GCATC | 2 cut(s) | 136, 505 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 113, 145 |
| BpmI | CTGGAG | 3 cut(s) | 91, 824, 881 |
| Bpu10I | CCTNAGC | 2 cut(s) | 555, 814 |
| BpuEI | CTTGAG | 2 cut(s) | 822, 864 |
| BpuMI | CCSGG | 2 cut(s) | 293, 686 |
| BsaHI | GRCGYC | 1 cut(s) | 170 |
| BsaI | GGTCTC | 1 cut(s) | 615 |
| BsaJI | CCNNGG | 6 cut(s) | 41, 165, 623, 685, 849, 943 |
| BsaWI | WCCGGW | 1 cut(s) | 365 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 175, 205, 531, 561, 906, 936 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 331, 536, 559 |
| Bse118I | RCCGGY | 2 cut(s) | 66, 559 |
| Bse1I | ACTGG | 4 cut(s) | 181, 239, 807, 849 |
| Bse21I | CCTNAGG | 1 cut(s) | 267 |
| BseBI | CCWGG | 6 cut(s) | 167, 624, 646, 851, 860, 908 |
| BseDI | CCNNGG | 6 cut(s) | 41, 165, 623, 685, 849, 943 |
| BseGI | GGATG | 2 cut(s) | 507, 916 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 331, 536, 559 |
| BseMII | CTCAG | 4 cut(s) | 258, 546, 666, 742 |
| BseNI | ACTGG | 4 cut(s) | 181, 239, 807, 849 |
| BseSI | GKGCMC | 1 cut(s) | 692 |
| BseXI | GCAGC | 6 cut(s) | 196, 421, 424, 427, 871, 874 |
| BseYI | CCCAGC | 1 cut(s) | 116 |
| Bsh1236I | CGCG | 2 cut(s) | 306, 657 |
| Bsh1285I | CGRYCG | 1 cut(s) | 685 |
| BshFI | GGCC | 4 cut(s) | 755, 848, 866, 942 |
| BshNI | GGYRCC | 2 cut(s) | 169, 574 |
| BsiEI | CGRYCG | 1 cut(s) | 685 |
| BsiHKCI | CYCGRG | 1 cut(s) | 593 |
| BsiSI | CCGG | 5 cut(s) | 67, 293, 366, 560, 685 |
| BslFI | GGGAC | 1 cut(s) | 640 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 331, 536, 559 |
| BsmAI | GTCTC | 2 cut(s) | 615, 624 |
| BsmBI | CGTCTC | 1 cut(s) | 624 |
| BsmFI | GGGAC | 1 cut(s) | 640 |
| BsnI | GGCC | 4 cut(s) | 755, 848, 866, 942 |
| Bso31I | GGTCTC | 1 cut(s) | 615 |
| BsoBI | CYCGRG | 1 cut(s) | 593 |
| Bsp1286I | GDGCHC | 1 cut(s) | 692 |
| Bsp143I | GATC | 3 cut(s) | 125, 288, 745 |
| Bsp68I | TCGCGA | 1 cut(s) | 306 |
| BspACI | CCGC | 4 cut(s) | 79, 572, 655, 925 |
| BspANI | GGCC | 4 cut(s) | 755, 848, 866, 942 |
| BspCNI | CTCAG | 4 cut(s) | 259, 547, 667, 741 |
| BspFNI | CGCG | 2 cut(s) | 306, 657 |
| BspMAI | CTGCAG | 3 cut(s) | 322, 445, 892 |
| BspPI | GGATC | 3 cut(s) | 120, 133, 283 |
| BspT107I | GGYRCC | 2 cut(s) | 169, 574 |
| BspTNI | GGTCTC | 1 cut(s) | 615 |
| BsrFI | RCCGGY | 2 cut(s) | 66, 559 |
| BsrI | ACTGG | 4 cut(s) | 181, 239, 807, 849 |
| BssAI | RCCGGY | 2 cut(s) | 66, 559 |
| BssECI | CCNNGG | 6 cut(s) | 41, 165, 623, 685, 849, 943 |
| BssMI | GATC | 3 cut(s) | 125, 288, 745 |
| BssNI | GRCGYC | 1 cut(s) | 170 |
| BssSI | CACGAG | 1 cut(s) | 407 |
| Bst2BI | CACGAG | 1 cut(s) | 407 |
| Bst2UI | CCWGG | 6 cut(s) | 167, 624, 646, 851, 860, 908 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| BstACI | GRCGYC | 1 cut(s) | 170 |
| BstC8I | GCNNGC | 6 cut(s) | 27, 263, 308, 655, 856, 940 |
| BstDEI | CTNAG | 5 cut(s) | 267, 555, 675, 728, 814 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 534 |
| BstF5I | GGATG | 2 cut(s) | 507, 916 |
| BstFNI | CGCG | 2 cut(s) | 306, 657 |
| BstH2I | RGCGCY | 2 cut(s) | 173, 347 |
| BstHHI | GCGC | 3 cut(s) | 172, 346, 653 |
| BstKTI | GATC | 3 cut(s) | 128, 291, 748 |
| BstMAI | GTCTC | 2 cut(s) | 615, 624 |
| BstMBI | GATC | 3 cut(s) | 125, 288, 745 |
| BstMCI | CGRYCG | 1 cut(s) | 685 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 440, 524, 650, 687, 773, 782, 872, 881 |
| BstNI | CCWGG | 6 cut(s) | 167, 624, 646, 851, 860, 908 |
| BstSCI | CCNGG | 8 cut(s) | 165, 291, 622, 644, 684, 849, 858, 906 |
| BstSFI | CTRYAG | 3 cut(s) | 318, 441, 888 |
| BstSLI | GKGCMC | 1 cut(s) | 692 |
| BstUI | CGCG | 2 cut(s) | 306, 657 |
| BstV1I | GCAGC | 6 cut(s) | 196, 421, 424, 427, 871, 874 |
| BstX2I | RGATCY | 2 cut(s) | 125, 745 |
| BstYI | RGATCY | 2 cut(s) | 125, 745 |
| Bsu36I | CCTNAGG | 1 cut(s) | 267 |
| BsuRI | GGCC | 4 cut(s) | 755, 848, 866, 942 |
| BtsCI | GGATG | 2 cut(s) | 507, 916 |
| BtsIMutI | CAGTG | 1 cut(s) | 211 |
| BtuMI | TCGCGA | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 6 cut(s) | 27, 263, 308, 655, 856, 940 |
| CfoI | GCGC | 3 cut(s) | 172, 346, 653 |
| Cfr10I | RCCGGY | 2 cut(s) | 66, 559 |
| Cfr13I | GGNCC | 6 cut(s) | 102, 627, 732, 754, 847, 865 |
| CseI | GACGC | 2 cut(s) | 138, 497 |
| Csp6I | GTAC | 1 cut(s) | 236 |
| CviAII | CATG | 2 cut(s) | 331, 788 |
| CviQI | GTAC | 1 cut(s) | 236 |
| DdeI | CTNAG | 5 cut(s) | 267, 555, 675, 728, 814 |
| DinI | GGCGCC | 1 cut(s) | 171 |
| DpnI | GATC | 3 cut(s) | 127, 290, 747 |
| DpnII | GATC | 3 cut(s) | 125, 288, 745 |
| EciI | GGCGGA | 1 cut(s) | 914 |
| Eco31I | GGTCTC | 1 cut(s) | 615 |
| Eco47I | GGWCC | 3 cut(s) | 102, 627, 732 |
| Eco47III | AGCGCT | 1 cut(s) | 345 |
| Eco57I | CTGAAG | 3 cut(s) | 56, 660, 734 |
| Eco81I | CCTNAGG | 1 cut(s) | 267 |
| Eco88I | CYCGRG | 1 cut(s) | 593 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 534 |
| EcoO109I | RGGNCCY | 3 cut(s) | 102, 627, 732 |
| EcoRII | CCWGG | 6 cut(s) | 165, 622, 644, 849, 858, 906 |
| EgeI | GGCGCC | 1 cut(s) | 171 |
| EheI | GGCGCC | 1 cut(s) | 171 |
| Esp3I | CGTCTC | 1 cut(s) | 624 |
| FaeI | CATG | 2 cut(s) | 334, 791 |
| FaiI | YATR | 8 cut(s) | 48, 139, 221, 332, 716, 770, 789, 936 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 330, 362 |
| FaqI | GGGAC | 1 cut(s) | 640 |
| FatI | CATG | 2 cut(s) | 330, 787 |
| FauI | CCCGC | 1 cut(s) | 662 |
| FblI | GTMKAC | 1 cut(s) | 152 |
| Fnu4HI | GCNGC | 6 cut(s) | 210, 435, 438, 441, 885, 888 |
| FokI | GGATG | 2 cut(s) | 494, 923 |
| Fsp4HI | GCNGC | 6 cut(s) | 210, 435, 438, 441, 885, 888 |
| FspBI | CTAG | 5 cut(s) | 89, 233, 359, 603, 777 |
| GlaI | GCGC | 3 cut(s) | 171, 345, 652 |
| GluI | GCNGC | 6 cut(s) | 210, 435, 438, 441, 885, 888 |
| GsaI | CCCAGC | 1 cut(s) | 120 |
| GsuI | CTGGAG | 3 cut(s) | 91, 824, 881 |
| HaeII | RGCGCY | 2 cut(s) | 173, 347 |
| HaeIII | GGCC | 4 cut(s) | 755, 848, 866, 942 |
| HapII | CCGG | 5 cut(s) | 67, 293, 366, 560, 685 |
| HgaI | GACGC | 2 cut(s) | 138, 497 |
| HhaI | GCGC | 3 cut(s) | 172, 346, 653 |
| Hin1I | GRCGYC | 1 cut(s) | 170 |
| Hin1II | CATG | 2 cut(s) | 334, 791 |
| Hin6I | GCGC | 3 cut(s) | 170, 344, 651 |
| HinP1I | GCGC | 3 cut(s) | 170, 344, 651 |
| HinfI | GANTC | 2 cut(s) | 350, 739 |
| HpaII | CCGG | 5 cut(s) | 67, 293, 366, 560, 685 |
| HphI | GGTGA | 3 cut(s) | 380, 470, 896 |
| Hpy166II | GTNNAC | 3 cut(s) | 153, 487, 550 |
| Hpy188I | TCNGA | 2 cut(s) | 640, 676 |
| Hpy188III | TCNNGA | 8 cut(s) | 34, 108, 305, 380, 593, 730, 743, 839 |
| Hpy8I | GTNNAC | 3 cut(s) | 153, 487, 550 |
| Hpy99I | CGWCG | 2 cut(s) | 99, 257 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 7 cut(s) | 141, 212, 223, 320, 443, 890, 938 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 440, 524, 650, 687, 773, 782, 872, 881 |
| HpyF3I | CTNAG | 5 cut(s) | 267, 555, 675, 728, 814 |
| Hsp92I | GRCGYC | 1 cut(s) | 170 |
| Hsp92II | CATG | 2 cut(s) | 334, 791 |
| HspAI | GCGC | 3 cut(s) | 170, 344, 651 |
| KasI | GGCGCC | 1 cut(s) | 169 |
| KflI | GGGWCCC | 1 cut(s) | 627 |
| Kzo9I | GATC | 3 cut(s) | 125, 288, 745 |
| LmnI | GCTCC | 4 cut(s) | 75, 586, 604, 805 |
| Lsp1109I | GCAGC | 6 cut(s) | 196, 421, 424, 427, 871, 874 |
| LweI | GCATC | 2 cut(s) | 136, 505 |
| MaeI | CTAG | 5 cut(s) | 89, 233, 359, 603, 777 |
| MaeIII | GTNAC | 1 cut(s) | 74 |
| MalI | GATC | 3 cut(s) | 127, 290, 747 |
| MboI | GATC | 3 cut(s) | 125, 288, 745 |
| MboII | GAAGA | 1 cut(s) | 740 |
| MflI | RGATCY | 2 cut(s) | 125, 745 |
| MhlI | GDGCHC | 1 cut(s) | 692 |
| MluCI | AATT | 2 cut(s) | 399, 758 |
| Mly113I | GGCGCC | 1 cut(s) | 170 |
| MmeI | TCCRAC | 1 cut(s) | 546 |
| MroXI | GAANNNNTTC | 1 cut(s) | 354 |
| MseI | TTAA | 1 cut(s) | 761 |
| MslI | CAYNNNNRTG | 1 cut(s) | 909 |
| MspI | CCGG | 5 cut(s) | 67, 293, 366, 560, 685 |
| MspR9I | CCNGG | 8 cut(s) | 167, 293, 624, 646, 686, 851, 860, 908 |
| MvaI | CCWGG | 6 cut(s) | 167, 624, 646, 851, 860, 908 |
| MvnI | CGCG | 2 cut(s) | 306, 657 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 440, 524, 650, 687, 773, 782, 872, 881 |
| NarI | GGCGCC | 1 cut(s) | 170 |
| NciI | CCSGG | 2 cut(s) | 293, 686 |
| NdeII | GATC | 3 cut(s) | 125, 288, 745 |
| NlaIII | CATG | 2 cut(s) | 334, 791 |
| NmeAIII | GCCGAG | 1 cut(s) | 66 |
| NruI | TCGCGA | 1 cut(s) | 306 |
| PaeR7I | CTCGAG | 1 cut(s) | 593 |
| PdmI | GAANNNNTTC | 1 cut(s) | 354 |
| PfeI | GAWTC | 2 cut(s) | 350, 739 |
| PfoI | TCCNGGA | 1 cut(s) | 291 |
| PkrI | GCNGC | 6 cut(s) | 211, 436, 439, 442, 886, 889 |
| PluTI | GGCGCC | 1 cut(s) | 173 |
| PpuMI | RGGWCCY | 3 cut(s) | 102, 627, 732 |
| Psp5II | RGGWCCY | 3 cut(s) | 102, 627, 732 |
| Psp6I | CCWGG | 6 cut(s) | 165, 622, 644, 849, 858, 906 |
| PspFI | CCCAGC | 1 cut(s) | 116 |
| PspGI | CCWGG | 6 cut(s) | 165, 622, 644, 849, 858, 906 |
| PspPI | GGNCC | 6 cut(s) | 102, 627, 732, 754, 847, 865 |
| PspPPI | RGGWCCY | 3 cut(s) | 102, 627, 732 |
| PstI | CTGCAG | 3 cut(s) | 322, 445, 892 |
| PsuI | RGATCY | 2 cut(s) | 125, 745 |
| RruI | TCGCGA | 1 cut(s) | 306 |
| RsaI | GTAC | 1 cut(s) | 237 |
| RsaNI | GTAC | 1 cut(s) | 236 |
| RseI | CAYNNNNRTG | 1 cut(s) | 909 |
| SaqAI | TTAA | 1 cut(s) | 761 |
| SatI | GCNGC | 6 cut(s) | 210, 435, 438, 441, 885, 888 |
| Sau3AI | GATC | 3 cut(s) | 125, 288, 745 |
| Sau96I | GGNCC | 6 cut(s) | 102, 627, 732, 754, 847, 865 |
| ScrFI | CCNGG | 8 cut(s) | 167, 293, 624, 646, 686, 851, 860, 908 |
| SduI | GDGCHC | 1 cut(s) | 692 |
| SfaNI | GCATC | 2 cut(s) | 136, 505 |
| SfcI | CTRYAG | 3 cut(s) | 318, 441, 888 |
| SfoI | GGCGCC | 1 cut(s) | 171 |
| Sfr274I | CTCGAG | 1 cut(s) | 593 |
| SinI | GGWCC | 3 cut(s) | 102, 627, 732 |
| SlaI | CTCGAG | 1 cut(s) | 593 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 909 |
| SmlI | CTYRAG | 3 cut(s) | 593, 837, 879 |
| SmoI | CTYRAG | 3 cut(s) | 593, 837, 879 |
| Sse9I | AATT | 2 cut(s) | 399, 758 |
| SsiI | CCGC | 4 cut(s) | 79, 572, 655, 925 |
| SspDI | GGCGCC | 1 cut(s) | 169 |
| SspMI | CTAG | 5 cut(s) | 89, 233, 359, 603, 777 |
| StyD4I | CCNGG | 8 cut(s) | 165, 291, 622, 644, 684, 849, 858, 906 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaqI | TCGA | 3 cut(s) | 252, 594, 825 |
| TasI | AATT | 2 cut(s) | 399, 758 |
| TfiI | GAWTC | 2 cut(s) | 350, 739 |
| Tru1I | TTAA | 1 cut(s) | 761 |
| Tru9I | TTAA | 1 cut(s) | 761 |
| TscAI | CASTG | 1 cut(s) | 211 |
| TseI | GCWGC | 6 cut(s) | 209, 434, 437, 440, 884, 887 |
| TspDTI | ATGAA | 2 cut(s) | 558, 927 |
| TspGWI | ACGGA | 2 cut(s) | 62, 599 |
| TspRI | CASTG | 1 cut(s) | 211 |
| VpaK11BI | GGWCC | 3 cut(s) | 102, 627, 732 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 534 |
| XapI | RAATTY | 1 cut(s) | 399 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 173 |
| XhoI | CTCGAG | 1 cut(s) | 593 |
| XmiI | GTMKAC | 1 cut(s) | 152 |
| XmnI | GAANNNNTTC | 1 cut(s) | 354 |
| XspI | CTAG | 5 cut(s) | 89, 233, 359, 603, 777 |