Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2416 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2379 |
| AatII | GACGTC | 1 cut(s) | 1197 |
| Acc16I | TGCGCA | 1 cut(s) | 321 |
| Acc36I | ACCTGC | 4 cut(s) | 1507, 2155, 2416, 2539 |
| AccB1I | GGYRCC | 3 cut(s) | 71, 269, 1174 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2713 |
| AccBSI | CCGCTC | 1 cut(s) | 442 |
| AccI | GTMKAC | 1 cut(s) | 1311 |
| AccIII | TCCGGA | 4 cut(s) | 1095, 1975, 2035, 2224 |
| AclI | AACGTT | 1 cut(s) | 2271 |
| AclWI | GGATC | 8 cut(s) | 1028, 1236, 1249, 1676, 1988, 2001, 2033, 2046 |
| AcoI | YGGCCR | 4 cut(s) | 302, 574, 793, 1602 |
| AcsI | RAATTY | 1 cut(s) | 2468 |
| AcuI | CTGAAG | 3 cut(s) | 1479, 1803, 2481 |
| AcyI | GRCGYC | 2 cut(s) | 189, 1194 |
| AfaI | GTAC | 6 cut(s) | 911, 950, 971, 1190, 1635, 2319 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AgeI | ACCGGT | 2 cut(s) | 865, 2197 |
| AgsI | TTSAA | 6 cut(s) | 46, 412, 830, 1439, 1487, 2057 |
| Alw21I | GWGCWC | 3 cut(s) | 1011, 1510, 2419 |
| Alw26I | GTCTC | 5 cut(s) | 246, 338, 1084, 1749, 2790 |
| AlwI | GGATC | 8 cut(s) | 1028, 1236, 1249, 1676, 1988, 2001, 2033, 2046 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1862 |
| Ama87I | CYCGRG | 2 cut(s) | 646, 2282 |
| Aor13HI | TCCGGA | 4 cut(s) | 1095, 1975, 2035, 2224 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| ApaI | GGGCCC | 3 cut(s) | 1233, 1294, 1871 |
| ApoI | RAATTY | 1 cut(s) | 2468 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 479, 511, 1373, 1405 |
| AseI | ATTAAT | 1 cut(s) | 2514 |
| AsiGI | ACCGGT | 2 cut(s) | 865, 2197 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1878, 2814 |
| AsuC2I | CCSGG | 8 cut(s) | 151, 182, 220, 671, 1517, 1601, 2400, 2504 |
| AsuHPI | GGTGA | 7 cut(s) | 104, 379, 569, 1043, 2135, 2621, 2731 |
| AsuII | TTCGAA | 1 cut(s) | 2775 |
| AsuNHI | GCTAGC | 2 cut(s) | 1055, 2846 |
| AvaI | CYCGRG | 2 cut(s) | 646, 2282 |
| AvaII | GGWCC | 7 cut(s) | 157, 765, 2381, 2551, 2632, 2661, 2674 |
| AxyI | CCTNAGG | 2 cut(s) | 1237, 1989 |
| BaeGI | GKGCMC | 6 cut(s) | 74, 274, 355, 1233, 1294, 1871 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BamHI | GGATCC | 3 cut(s) | 1241, 1993, 2038 |
| BanI | GGYRCC | 3 cut(s) | 71, 269, 1174 |
| BanII | GRGCYC | 7 cut(s) | 810, 1233, 1294, 1510, 1871, 2064, 2419 |
| BauI | CACGAG | 2 cut(s) | 354, 1734 |
| BbsI | GAAGAC | 2 cut(s) | 200, 1467 |
| Bbv12I | GWGCWC | 3 cut(s) | 1011, 1510, 2419 |
| BbvCI | CCTCAGC | 1 cut(s) | 2085 |
| BceAI | ACGGC | 4 cut(s) | 69, 289, 808, 952 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 38, 61, 72, 95, 532, 566, 876, 910 |
| BcnI | CCSGG | 8 cut(s) | 151, 182, 220, 671, 1517, 1601, 2400, 2504 |
| BcoDI | GTCTC | 5 cut(s) | 246, 338, 1084, 1749, 2790 |
| BfaI | CTAG | 9 cut(s) | 98, 362, 756, 1056, 1271, 1617, 2162, 2847, 2858 |
| BfmI | CTRYAG | 6 cut(s) | 378, 1308, 1647, 2241, 2366, 2838 |
| BfoI | RGCGCY | 3 cut(s) | 630, 1856, 2175 |
| BfuAI | ACCTGC | 4 cut(s) | 1507, 2155, 2416, 2539 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1158 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BmcAI | AGTACT | 2 cut(s) | 911, 1635 |
| Bme18I | GGWCC | 7 cut(s) | 157, 765, 2381, 2551, 2632, 2661, 2674 |
| BmeT110I | CYCGRG | 2 cut(s) | 646, 2282 |
| BmrI | ACTGGG | 2 cut(s) | 1288, 2701 |
| BmsI | GCATC | 7 cut(s) | 87, 393, 519, 1539, 1969, 2242, 2600 |
| BmtI | GCTAGC | 2 cut(s) | 1059, 2850 |
| BmuI | ACTGGG | 2 cut(s) | 1288, 2701 |
| BpiI | GAAGAC | 2 cut(s) | 200, 1467 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| BpmI | CTGGAG | 2 cut(s) | 270, 1536 |
| Bpu10I | CCTNAGC | 3 cut(s) | 772, 1412, 2085 |
| Bpu14I | TTCGAA | 1 cut(s) | 2775 |
| BpuEI | CTTGAG | 4 cut(s) | 725, 2124, 2753, 2784 |
| BpuMI | CCSGG | 8 cut(s) | 151, 182, 220, 671, 1517, 1601, 2400, 2504 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 552 |
| BsaHI | GRCGYC | 2 cut(s) | 189, 1194 |
| BsaWI | WCCGGW | 9 cut(s) | 686, 865, 1095, 1954, 1975, 2035, 2191, 2197, 2224 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 2484, 2514 |
| Bse118I | RCCGGY | 2 cut(s) | 865, 2197 |
| Bse1I | ACTGG | 7 cut(s) | 230, 544, 1178, 1294, 1590, 1770, 2707 |
| Bse21I | CCTNAGG | 2 cut(s) | 1237, 1989 |
| BseAI | TCCGGA | 4 cut(s) | 1095, 1975, 2035, 2224 |
| BseCI | ATCGAT | 2 cut(s) | 27, 552 |
| BseGI | GGATG | 4 cut(s) | 525, 1092, 1678, 1984 |
| BseMII | CTCAG | 4 cut(s) | 1251, 1980, 2076, 2762 |
| BseNI | ACTGG | 7 cut(s) | 230, 544, 1178, 1294, 1590, 1770, 2707 |
| BseRI | GAGGAG | 6 cut(s) | 730, 909, 1500, 1539, 2102, 2268 |
| BseSI | GKGCMC | 6 cut(s) | 74, 274, 355, 1233, 1294, 1871 |
| BseX3I | CGGCCG | 2 cut(s) | 793, 1602 |
| BseYI | CCCAGC | 3 cut(s) | 160, 612, 1805 |
| BsgI | GTGCAG | 2 cut(s) | 718, 1946 |
| Bsh1285I | CGRYCG | 8 cut(s) | 687, 796, 870, 1605, 2001, 2202, 2529, 2535 |
| BshNI | GGYRCC | 3 cut(s) | 71, 269, 1174 |
| BshTI | ACCGGT | 2 cut(s) | 865, 2197 |
| BshVI | ATCGAT | 2 cut(s) | 27, 552 |
| BsiEI | CGRYCG | 8 cut(s) | 687, 796, 870, 1605, 2001, 2202, 2529, 2535 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1011, 1510, 2419 |
| BsiHKCI | CYCGRG | 2 cut(s) | 646, 2282 |
| BslFI | GGGAC | 6 cut(s) | 1166, 1282, 2063, 2216, 2372, 2645 |
| BsmAI | GTCTC | 5 cut(s) | 246, 338, 1084, 1749, 2790 |
| BsmBI | CGTCTC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 6 cut(s) | 1166, 1282, 2063, 2216, 2372, 2645 |
| BsmI | GAATGC | 3 cut(s) | 90, 379, 938 |
| BsoBI | CYCGRG | 2 cut(s) | 646, 2282 |
| Bsp119I | TTCGAA | 1 cut(s) | 2775 |
| Bsp120I | GGGCCC | 3 cut(s) | 1229, 1290, 1867 |
| Bsp13I | TCCGGA | 4 cut(s) | 1095, 1975, 2035, 2224 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 3 cut(s) | 342, 1542, 2598 |
| BspCNI | CTCAG | 4 cut(s) | 1250, 1981, 2077, 2761 |
| BspDI | ATCGAT | 2 cut(s) | 27, 552 |
| BspEI | TCCGGA | 4 cut(s) | 1095, 1975, 2035, 2224 |
| BspHI | TCATGA | 1 cut(s) | 2419 |
| BspMAI | CTGCAG | 5 cut(s) | 382, 1651, 2245, 2370, 2842 |
| BspMI | ACCTGC | 4 cut(s) | 1507, 2155, 2416, 2539 |
| BspOI | GCTAGC | 2 cut(s) | 1059, 2850 |
| BspPI | GGATC | 8 cut(s) | 1028, 1236, 1249, 1676, 1988, 2001, 2033, 2046 |
| BspQI | GCTCTTC | 1 cut(s) | 1822 |
| BspT104I | TTCGAA | 1 cut(s) | 2775 |
| BspT107I | GGYRCC | 3 cut(s) | 71, 269, 1174 |
| BsrBI | CCGCTC | 1 cut(s) | 442 |
| BsrFI | RCCGGY | 2 cut(s) | 865, 2197 |
| BsrI | ACTGG | 7 cut(s) | 230, 544, 1178, 1294, 1590, 1770, 2707 |
| BssAI | RCCGGY | 2 cut(s) | 865, 2197 |
| BssNI | GRCGYC | 2 cut(s) | 189, 1194 |
| BssSI | CACGAG | 2 cut(s) | 354, 1734 |
| BssT1I | CCWWGG | 4 cut(s) | 606, 1573, 2700, 2763 |
| Bst2BI | CACGAG | 2 cut(s) | 354, 1734 |
| Bst4CI | ACNGT | 7 cut(s) | 635, 879, 974, 1693, 1943, 2013, 2363 |
| Bst6I | CTCTTC | 2 cut(s) | 1394, 1822 |
| BstACI | GRCGYC | 2 cut(s) | 189, 1194 |
| BstBI | TTCGAA | 1 cut(s) | 2775 |
| BstDEI | CTNAG | 8 cut(s) | 12, 772, 1115, 1237, 1412, 1989, 2085, 2748 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1554 |
| BstF5I | GGATG | 4 cut(s) | 525, 1092, 1678, 1984 |
| BstH2I | RGCGCY | 3 cut(s) | 630, 1856, 2175 |
| BstMAI | GTCTC | 5 cut(s) | 246, 338, 1084, 1749, 2790 |
| BstMCI | CGRYCG | 8 cut(s) | 687, 796, 870, 1605, 2001, 2202, 2529, 2535 |
| BstNSI | RCATGY | 2 cut(s) | 1264, 1805 |
| BstSFI | CTRYAG | 6 cut(s) | 378, 1308, 1647, 2241, 2366, 2838 |
| BstSLI | GKGCMC | 6 cut(s) | 74, 274, 355, 1233, 1294, 1871 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 1467 |
| BstX2I | RGATCY | 4 cut(s) | 358, 1241, 1993, 2038 |
| BstYI | RGATCY | 4 cut(s) | 358, 1241, 1993, 2038 |
| BstZI | CGGCCG | 2 cut(s) | 793, 1602 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 552 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1237, 1989 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 552 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 2 cut(s) | 178, 2795 |
| BtsCI | GGATG | 4 cut(s) | 525, 1092, 1678, 1984 |
| BtsIMutI | CAGTG | 5 cut(s) | 537, 640, 1597, 1763, 2457 |
| BtuMI | TCGCGA | 3 cut(s) | 342, 1542, 2598 |
| BveI | ACCTGC | 4 cut(s) | 1507, 2155, 2416, 2539 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1862 |
| CciI | TCATGA | 1 cut(s) | 2419 |
| Cfr10I | RCCGGY | 2 cut(s) | 865, 2197 |
| ClaI | ATCGAT | 2 cut(s) | 27, 552 |
| CseI | GACGC | 5 cut(s) | 197, 355, 1313, 2614, 2852 |
| Csp6I | GTAC | 6 cut(s) | 910, 949, 970, 1189, 1634, 2318 |
| CspAI | ACCGGT | 2 cut(s) | 865, 2197 |
| CviAII | CATG | 6 cut(s) | 572, 607, 1261, 1802, 2420, 2885 |
| CviQI | GTAC | 6 cut(s) | 910, 949, 970, 1189, 1634, 2318 |
| DdeI | CTNAG | 8 cut(s) | 12, 772, 1115, 1237, 1412, 1989, 2085, 2748 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2379 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2379 |
| EaeI | YGGCCR | 4 cut(s) | 302, 574, 793, 1602 |
| EagI | CGGCCG | 2 cut(s) | 793, 1602 |
| Eam1104I | CTCTTC | 2 cut(s) | 1394, 1822 |
| EarI | CTCTTC | 2 cut(s) | 1394, 1822 |
| EciI | GGCGGA | 1 cut(s) | 827 |
| Ecl136II | GAGCTC | 2 cut(s) | 1508, 2417 |
| EclXI | CGGCCG | 2 cut(s) | 793, 1602 |
| Eco130I | CCWWGG | 4 cut(s) | 606, 1573, 2700, 2763 |
| Eco24I | GRGCYC | 7 cut(s) | 810, 1233, 1294, 1510, 1871, 2064, 2419 |
| Eco32I | GATATC | 1 cut(s) | 850 |
| Eco47I | GGWCC | 7 cut(s) | 157, 765, 2381, 2551, 2632, 2661, 2674 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco52I | CGGCCG | 2 cut(s) | 793, 1602 |
| Eco53kI | GAGCTC | 2 cut(s) | 1508, 2417 |
| Eco57I | CTGAAG | 3 cut(s) | 1479, 1803, 2481 |
| Eco81I | CCTNAGG | 2 cut(s) | 1237, 1989 |
| Eco88I | CYCGRG | 2 cut(s) | 646, 2282 |
| EcoICRI | GAGCTC | 2 cut(s) | 1508, 2417 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1554 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1230, 1473, 1868, 2381, 2632, 2674 |
| EcoRI | GAATTC | 1 cut(s) | 2468 |
| EcoRV | GATATC | 1 cut(s) | 850 |
| EcoT14I | CCWWGG | 4 cut(s) | 606, 1573, 2700, 2763 |
| EcoT38I | GRGCYC | 7 cut(s) | 810, 1233, 1294, 1510, 1871, 2064, 2419 |
| ErhI | CCWWGG | 4 cut(s) | 606, 1573, 2700, 2763 |
| Esp3I | CGTCTC | 1 cut(s) | 338 |
| FaeI | CATG | 6 cut(s) | 575, 610, 1264, 1805, 2423, 2888 |
| FaqI | GGGAC | 6 cut(s) | 1166, 1282, 2063, 2216, 2372, 2645 |
| FatI | CATG | 6 cut(s) | 571, 606, 1260, 1801, 2419, 2884 |
| FauI | CCCGC | 9 cut(s) | 254, 342, 861, 1157, 1254, 1484, 2071, 2125, 2881 |
| FblI | GTMKAC | 1 cut(s) | 1311 |
| FokI | GGATG | 4 cut(s) | 512, 1079, 1685, 1991 |
| FriOI | GRGCYC | 7 cut(s) | 810, 1233, 1294, 1510, 1871, 2064, 2419 |
| FspBI | CTAG | 9 cut(s) | 98, 362, 756, 1056, 1271, 1617, 2162, 2847, 2858 |
| FspI | TGCGCA | 1 cut(s) | 321 |
| GsaI | CCCAGC | 3 cut(s) | 164, 616, 1809 |
| GsuI | CTGGAG | 2 cut(s) | 270, 1536 |
| HaeII | RGCGCY | 3 cut(s) | 630, 1856, 2175 |
| HgaI | GACGC | 5 cut(s) | 197, 355, 1313, 2614, 2852 |
| Hin1I | GRCGYC | 2 cut(s) | 189, 1194 |
| Hin1II | CATG | 6 cut(s) | 575, 610, 1264, 1805, 2423, 2888 |
| HincII | GTYRAC | 1 cut(s) | 592 |
| HindII | GTYRAC | 1 cut(s) | 592 |
| HphI | GGTGA | 7 cut(s) | 104, 379, 569, 1043, 2135, 2621, 2731 |
| Hpy166II | GTNNAC | 5 cut(s) | 560, 592, 1312, 2318, 2897 |
| Hpy8I | GTNNAC | 5 cut(s) | 560, 592, 1312, 2318, 2897 |
| Hpy99I | CGWCG | 6 cut(s) | 191, 1196, 1307, 1682, 1697, 1788 |
| HpyCH4III | ACNGT | 7 cut(s) | 635, 879, 974, 1693, 1943, 2013, 2363 |
| HpyCH4IV | ACGT | 3 cut(s) | 1194, 2076, 2271 |
| HpyF3I | CTNAG | 8 cut(s) | 12, 772, 1115, 1237, 1412, 1989, 2085, 2748 |
| HpySE526I | ACGT | 3 cut(s) | 1194, 2076, 2271 |
| Hsp92I | GRCGYC | 2 cut(s) | 189, 1194 |
| Hsp92II | CATG | 6 cut(s) | 575, 610, 1264, 1805, 2423, 2888 |
| Kpn2I | TCCGGA | 4 cut(s) | 1095, 1975, 2035, 2224 |
| LguI | GCTCTTC | 1 cut(s) | 1822 |
| LmnI | GCTCC | 5 cut(s) | 10, 1138, 1513, 2011, 2335 |
| LweI | GCATC | 7 cut(s) | 87, 393, 519, 1539, 1969, 2242, 2600 |
| MaeI | CTAG | 9 cut(s) | 98, 362, 756, 1056, 1271, 1617, 2162, 2847, 2858 |
| MaeII | ACGT | 3 cut(s) | 1194, 2076, 2271 |
| MaeIII | GTNAC | 3 cut(s) | 2072, 2341, 2719 |
| MbiI | CCGCTC | 1 cut(s) | 442 |
| MfeI | CAATTG | 2 cut(s) | 1169, 1360 |
| MflI | RGATCY | 4 cut(s) | 358, 1241, 1993, 2038 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| MlyI | GAGTC | 5 cut(s) | 238, 578, 1363, 2349, 2594 |
| MmeI | TCCRAC | 3 cut(s) | 135, 162, 501 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MroI | TCCGGA | 4 cut(s) | 1095, 1975, 2035, 2224 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1878, 2814 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 2 cut(s) | 980, 2514 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspA1I | CMGCKG | 3 cut(s) | 1823, 2120, 2246 |
| MteI | GCGCNGCGC | 1 cut(s) | 1568 |
| MunI | CAATTG | 2 cut(s) | 1169, 1360 |
| Mva1269I | GAATGC | 3 cut(s) | 90, 379, 938 |
| NciI | CCSGG | 8 cut(s) | 151, 182, 220, 671, 1517, 1601, 2400, 2504 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NheI | GCTAGC | 2 cut(s) | 1055, 2846 |
| NlaIII | CATG | 6 cut(s) | 575, 610, 1264, 1805, 2423, 2888 |
| NmeAIII | GCCGAG | 2 cut(s) | 1137, 2094 |
| NmuCI | GTSAC | 2 cut(s) | 2341, 2719 |
| NruI | TCGCGA | 3 cut(s) | 342, 1542, 2598 |
| NsbI | TGCGCA | 1 cut(s) | 321 |
| NspI | RCATGY | 2 cut(s) | 1264, 1805 |
| NspV | TTCGAA | 1 cut(s) | 2775 |
| PaeI | GCATGC | 1 cut(s) | 1264 |
| PagI | TCATGA | 1 cut(s) | 2419 |
| PaqCI | CACCTGC | 1 cut(s) | 2416 |
| PasI | CCCWGGG | 1 cut(s) | 1746 |
| PciSI | GCTCTTC | 1 cut(s) | 1822 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1501, 1539 |
| PctI | GAATGC | 3 cut(s) | 90, 379, 938 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1878, 2814 |
| PfeI | GAWTC | 8 cut(s) | 693, 996, 1224, 1417, 1643, 1658, 1907, 2620 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2713 |
| PfoI | TCCNGGA | 2 cut(s) | 180, 247 |
| PinAI | ACCGGT | 2 cut(s) | 865, 2197 |
| Ple19I | CGATCG | 1 cut(s) | 2001 |
| PleI | GAGTC | 5 cut(s) | 238, 578, 1363, 2348, 2594 |
| PpsI | GAGTC | 5 cut(s) | 238, 578, 1363, 2348, 2594 |
| PpuMI | RGGWCCY | 3 cut(s) | 2381, 2632, 2674 |
| PshBI | ATTAAT | 1 cut(s) | 2514 |
| Psp124BI | GAGCTC | 2 cut(s) | 1510, 2419 |
| Psp1406I | AACGTT | 1 cut(s) | 2271 |
| Psp5II | RGGWCCY | 3 cut(s) | 2381, 2632, 2674 |
| PspFI | CCCAGC | 3 cut(s) | 160, 612, 1805 |
| PspOMI | GGGCCC | 3 cut(s) | 1229, 1290, 1867 |
| PspPPI | RGGWCCY | 3 cut(s) | 2381, 2632, 2674 |
| PstI | CTGCAG | 5 cut(s) | 382, 1651, 2245, 2370, 2842 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1862 |
| PsuI | RGATCY | 4 cut(s) | 358, 1241, 1993, 2038 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| PvuI | CGATCG | 1 cut(s) | 2001 |
| PvuII | CAGCTG | 2 cut(s) | 1823, 2246 |
| RruI | TCGCGA | 3 cut(s) | 342, 1542, 2598 |
| RsaI | GTAC | 6 cut(s) | 911, 950, 971, 1190, 1635, 2319 |
| RsaNI | GTAC | 6 cut(s) | 910, 949, 970, 1189, 1634, 2318 |
| SacI | GAGCTC | 2 cut(s) | 1510, 2419 |
| SapI | GCTCTTC | 1 cut(s) | 1822 |
| SaqAI | TTAA | 2 cut(s) | 980, 2514 |
| ScaI | AGTACT | 2 cut(s) | 911, 1635 |
| SchI | GAGTC | 5 cut(s) | 238, 578, 1363, 2349, 2594 |
| SfaNI | GCATC | 7 cut(s) | 87, 393, 519, 1539, 1969, 2242, 2600 |
| SfcI | CTRYAG | 6 cut(s) | 378, 1308, 1647, 2241, 2366, 2838 |
| SfuI | TTCGAA | 1 cut(s) | 2775 |
| SinI | GGWCC | 7 cut(s) | 157, 765, 2381, 2551, 2632, 2661, 2674 |
| SmlI | CTYRAG | 4 cut(s) | 704, 2139, 2732, 2799 |
| SmoI | CTYRAG | 4 cut(s) | 704, 2139, 2732, 2799 |
| SphI | GCATGC | 1 cut(s) | 1264 |
| SspMI | CTAG | 9 cut(s) | 98, 362, 756, 1056, 1271, 1617, 2162, 2847, 2858 |
| SstI | GAGCTC | 2 cut(s) | 1510, 2419 |
| StyI | CCWWGG | 4 cut(s) | 606, 1573, 2700, 2763 |
| TaaI | ACNGT | 7 cut(s) | 635, 879, 974, 1693, 1943, 2013, 2363 |
| TaiI | ACGT | 3 cut(s) | 1197, 2079, 2274 |
| TatI | WGTACW | 4 cut(s) | 909, 948, 1633, 2317 |
| TfiI | GAWTC | 8 cut(s) | 693, 996, 1224, 1417, 1643, 1658, 1907, 2620 |
| Tru1I | TTAA | 2 cut(s) | 980, 2514 |
| Tru9I | TTAA | 2 cut(s) | 980, 2514 |
| TscAI | CASTG | 5 cut(s) | 544, 640, 1597, 1770, 2464 |
| TseFI | GTSAC | 2 cut(s) | 2341, 2719 |
| Tsp45I | GTSAC | 2 cut(s) | 2341, 2719 |
| TspDTI | ATGAA | 4 cut(s) | 630, 715, 2364, 2877 |
| TspGWI | ACGGA | 4 cut(s) | 1329, 1345, 2524, 2653 |
| TspRI | CASTG | 5 cut(s) | 544, 640, 1597, 1770, 2464 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2713 |
| VpaK11BI | GGWCC | 7 cut(s) | 157, 765, 2381, 2551, 2632, 2661, 2674 |
| VspI | ATTAAT | 1 cut(s) | 2514 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1554 |
| XapI | RAATTY | 1 cut(s) | 2468 |
| XbaI | TCTAGA | 4 cut(s) | 97, 1616, 2161, 2857 |
| XceI | RCATGY | 2 cut(s) | 1264, 1805 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2707 |
| XmiI | GTMKAC | 1 cut(s) | 1311 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1878, 2814 |
| XspI | CTAG | 9 cut(s) | 98, 362, 756, 1056, 1271, 1617, 2162, 2847, 2858 |
| ZraI | GACGTC | 1 cut(s) | 1195 |
| ZrmI | AGTACT | 2 cut(s) | 911, 1635 |